data_4A6E
#
_model_server_result.job_id            Pzy9nVHxCRwXmhGLp4I36A 
_model_server_result.datetime_utc      '2024-11-07 16:46:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4a6e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1349}' 
#
_entry.id    4A6E 
#
_exptl.entry_id    4A6E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4A6E 
_cell.length_a            170.08 
_cell.length_b            170.08 
_cell.length_c            128.22 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4A6E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 98.195734 85.48 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 267 A GLU 267 1_555 B ZN ZN . A ZN 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc2 A NE2 HIS 271 A HIS 271 1_555 B ZN ZN . A ZN 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 321 n n 
N HN1 SAM sing 322 n n 
N HN2 SAM sing 323 n n 
CA C SAM sing 324 n n 
CA CB SAM sing 325 n n 
CA HA SAM sing 326 n n 
C O SAM doub 327 n n 
C OXT SAM sing 328 n n 
CB CG SAM sing 329 n n 
CB HB1 SAM sing 330 n n 
CB HB2 SAM sing 331 n n 
CG SD SAM sing 332 n n 
CG HG1 SAM sing 333 n n 
CG HG2 SAM sing 334 n n 
SD CE SAM sing 335 n n 
SD C5' SAM sing 336 n n 
CE HE1 SAM sing 337 n n 
CE HE2 SAM sing 338 n n 
CE HE3 SAM sing 339 n n 
C5' C4' SAM sing 340 n n 
C5' "H5'1" SAM sing 341 n n 
C5' "H5'2" SAM sing 342 n n 
C4' O4' SAM sing 343 n n 
C4' C3' SAM sing 344 n n 
C4' H4' SAM sing 345 n n 
O4' C1' SAM sing 346 n n 
C3' O3' SAM sing 347 n n 
C3' C2' SAM sing 348 n n 
C3' H3' SAM sing 349 n n 
O3' HO3' SAM sing 350 n n 
C2' O2' SAM sing 351 n n 
C2' C1' SAM sing 352 n n 
C2' H2' SAM sing 353 n n 
O2' HO2' SAM sing 354 n n 
C1' N9 SAM sing 355 n n 
C1' H1' SAM sing 356 n n 
N9 C8 SAM sing 357 n y 
N9 C4 SAM sing 358 n y 
C8 N7 SAM doub 359 n y 
C8 H8 SAM sing 360 n n 
N7 C5 SAM sing 361 n y 
C5 C6 SAM sing 362 n y 
C5 C4 SAM doub 363 n y 
C6 N6 SAM sing 364 n n 
C6 N1 SAM doub 365 n y 
N6 HN61 SAM sing 366 n n 
N6 HN62 SAM sing 367 n n 
N1 C2 SAM sing 368 n y 
C2 N3 SAM doub 369 n y 
C2 H2 SAM sing 370 n n 
N3 C4 SAM sing 371 n y 
#
_atom_sites.entry_id                     4A6E 
_atom_sites.fract_transf_matrix[1][1]    0.00588 
_atom_sites.fract_transf_matrix[1][2]    0.003395 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006789 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007799 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1348 1348 ZN ZN . 
C 3 SAM A 1 1349 1349 SAM SAM . 
D 4 ASE A 1 1350 1350 ASE ASE . 
E 5 SO4 A 1 1351 1351 SO4 SO4 . 
F 5 SO4 A 1 1352 1352 SO4 SO4 . 
G 5 SO4 A 1 1353 1353 SO4 SO4 . 
H 5 SO4 A 1 1354 1354 SO4 SO4 . 
I 5 SO4 A 1 1355 1355 SO4 SO4 . 
J 5 SO4 A 1 1356 1356 SO4 SO4 . 
K 6 GOL A 1 1357 1357 GOL GOL . 
L 7 HOH A 1 2001 2001 HOH HOH . 
L 7 HOH A 2 2002 2002 HOH HOH . 
L 7 HOH A 3 2003 2003 HOH HOH . 
L 7 HOH A 4 2004 2004 HOH HOH . 
L 7 HOH A 5 2005 2005 HOH HOH . 
L 7 HOH A 6 2006 2006 HOH HOH . 
L 7 HOH A 7 2007 2007 HOH HOH . 
L 7 HOH A 8 2008 2008 HOH HOH . 
L 7 HOH A 9 2009 2009 HOH HOH . 
L 7 HOH A 10 2010 2010 HOH HOH . 
L 7 HOH A 11 2011 2011 HOH HOH . 
L 7 HOH A 12 2012 2012 HOH HOH . 
L 7 HOH A 13 2013 2013 HOH HOH . 
L 7 HOH A 14 2014 2014 HOH HOH . 
L 7 HOH A 15 2015 2015 HOH HOH . 
L 7 HOH A 16 2016 2016 HOH HOH . 
L 7 HOH A 17 2017 2017 HOH HOH . 
L 7 HOH A 18 2018 2018 HOH HOH . 
L 7 HOH A 19 2019 2019 HOH HOH . 
L 7 HOH A 20 2020 2020 HOH HOH . 
L 7 HOH A 21 2021 2021 HOH HOH . 
L 7 HOH A 22 2022 2022 HOH HOH . 
L 7 HOH A 23 2023 2023 HOH HOH . 
L 7 HOH A 24 2024 2024 HOH HOH . 
L 7 HOH A 25 2025 2025 HOH HOH . 
L 7 HOH A 26 2026 2026 HOH HOH . 
L 7 HOH A 27 2027 2027 HOH HOH . 
L 7 HOH A 28 2028 2028 HOH HOH . 
L 7 HOH A 29 2029 2029 HOH HOH . 
L 7 HOH A 30 2030 2030 HOH HOH . 
L 7 HOH A 31 2031 2031 HOH HOH . 
L 7 HOH A 32 2032 2032 HOH HOH . 
L 7 HOH A 33 2033 2033 HOH HOH . 
L 7 HOH A 34 2034 2034 HOH HOH . 
L 7 HOH A 35 2035 2035 HOH HOH . 
L 7 HOH A 36 2036 2036 HOH HOH . 
L 7 HOH A 37 2037 2037 HOH HOH . 
L 7 HOH A 38 2038 2038 HOH HOH . 
L 7 HOH A 39 2039 2039 HOH HOH . 
L 7 HOH A 40 2040 2040 HOH HOH . 
L 7 HOH A 41 2041 2041 HOH HOH . 
L 7 HOH A 42 2042 2042 HOH HOH . 
L 7 HOH A 43 2043 2043 HOH HOH . 
L 7 HOH A 44 2044 2044 HOH HOH . 
L 7 HOH A 45 2045 2045 HOH HOH . 
L 7 HOH A 46 2046 2046 HOH HOH . 
L 7 HOH A 47 2047 2047 HOH HOH . 
L 7 HOH A 48 2048 2048 HOH HOH . 
L 7 HOH A 49 2049 2049 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . C 3 3.087 23.303 40.568 1 53.08 ? N SAM 1349 A 1 
HETATM 2 C CA SAM . . . C 3 2.77 24.486 39.696 1 55.4 ? CA SAM 1349 A 1 
HETATM 3 C C SAM . . . C 3 3.876 25.542 39.661 1 58.87 ? C SAM 1349 A 1 
HETATM 4 O O SAM . . . C 3 4.668 25.681 40.612 1 57.89 ? O SAM 1349 A 1 
HETATM 5 O OXT SAM . . . C 3 3.966 26.292 38.654 1 58.92 ? OXT SAM 1349 A 1 
HETATM 6 C CB SAM . . . C 3 1.441 25.124 40.02 1 54.04 ? CB SAM 1349 A 1 
HETATM 7 C CG SAM . . . C 3 1.579 25.806 41.386 1 53.41 ? CG SAM 1349 A 1 
HETATM 8 S SD SAM . . . C 3 0.061 26.644 41.963 1 54.57 ? SD SAM 1349 A 1 
HETATM 9 C CE SAM . . . C 3 0.75 27.606 43.198 1 56.78 ? CE SAM 1349 A 1 
HETATM 10 C C5' SAM . . . C 3 -0.809 25.467 43.035 1 54.86 ? C5' SAM 1349 A 1 
HETATM 11 C C4' SAM . . . C 3 -1.516 24.394 42.209 1 54.38 ? C4' SAM 1349 A 1 
HETATM 12 O O4' SAM . . . C 3 -2.259 23.564 43.139 1 54.9 ? O4' SAM 1349 A 1 
HETATM 13 C C3' SAM . . . C 3 -2.51 25.054 41.224 1 55.84 ? C3' SAM 1349 A 1 
HETATM 14 O O3' SAM . . . C 3 -2.258 24.457 39.972 1 58.04 ? O3' SAM 1349 A 1 
HETATM 15 C C2' SAM . . . C 3 -3.922 24.722 41.82 1 55.91 ? C2' SAM 1349 A 1 
HETATM 16 O O2' SAM . . . C 3 -4.892 24.464 40.803 1 56.4 ? O2' SAM 1349 A 1 
HETATM 17 C C1' SAM . . . C 3 -3.585 23.381 42.536 1 55.3 ? C1' SAM 1349 A 1 
HETATM 18 N N9 SAM . . . C 3 -4.509 22.953 43.577 1 56.08 ? N9 SAM 1349 A 1 
HETATM 19 C C8 SAM . . . C 3 -4.994 23.726 44.6 1 56.03 ? C8 SAM 1349 A 1 
HETATM 20 N N7 SAM . . . C 3 -5.799 23.004 45.343 1 56.66 ? N7 SAM 1349 A 1 
HETATM 21 C C5 SAM . . . C 3 -5.869 21.72 44.887 1 56.74 ? C5 SAM 1349 A 1 
HETATM 22 C C6 SAM . . . C 3 -6.541 20.543 45.319 1 56.55 ? C6 SAM 1349 A 1 
HETATM 23 N N6 SAM . . . C 3 -7.318 20.524 46.443 1 56.75 ? N6 SAM 1349 A 1 
HETATM 24 N N1 SAM . . . C 3 -6.374 19.44 44.587 1 56.66 ? N1 SAM 1349 A 1 
HETATM 25 C C2 SAM . . . C 3 -5.585 19.444 43.457 1 56.54 ? C2 SAM 1349 A 1 
HETATM 26 N N3 SAM . . . C 3 -4.893 20.505 43.023 1 56.11 ? N3 SAM 1349 A 1 
HETATM 27 C C4 SAM . . . C 3 -5.02 21.662 43.722 1 56.61 ? C4 SAM 1349 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           27 
#