data_4A6E
#
_model_server_result.job_id            O92y5hUcukoTj4aF_Fzx0w 
_model_server_result.datetime_utc      '2024-11-07 16:37:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4a6e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1350}' 
#
_entry.id    4A6E 
#
_exptl.entry_id    4A6E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              218.252 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-ACETYL SEROTONIN' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4A6E 
_cell.length_a            170.08 
_cell.length_b            170.08 
_cell.length_c            128.22 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4A6E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 98.195734 85.48 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 267 A GLU 267 1_555 B ZN ZN . A ZN 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc2 A NE2 HIS 271 A HIS 271 1_555 B ZN ZN . A ZN 1348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
#
_chem_comp.formula           'C12 H14 N2 O2' 
_chem_comp.formula_weight    218.252 
_chem_comp.id                ASE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-ACETYL SEROTONIN' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 ASE doub 39 n y 
C1 C4 ASE sing 40 n y 
C1 O10 ASE sing 41 n n 
C2 C3 ASE sing 42 n y 
C2 H2 ASE sing 43 n n 
C3 C6 ASE doub 44 n y 
C3 C7 ASE sing 45 n y 
C4 C5 ASE doub 46 n y 
C4 H4 ASE sing 47 n n 
C5 C6 ASE sing 48 n y 
C5 H5 ASE sing 49 n n 
C6 N9 ASE sing 50 n y 
C7 C8 ASE doub 51 n y 
C7 C11 ASE sing 52 n n 
C8 N9 ASE sing 53 n y 
C8 H8 ASE sing 54 n n 
N9 HN9 ASE sing 55 n n 
O10 HO0 ASE sing 56 n n 
C11 C12 ASE sing 57 n n 
C11 H111 ASE sing 58 n n 
C11 H112 ASE sing 59 n n 
C12 N13 ASE sing 60 n n 
C12 H121 ASE sing 61 n n 
C12 H122 ASE sing 62 n n 
N13 C14 ASE sing 63 n n 
N13 HN3 ASE sing 64 n n 
C14 C15 ASE sing 65 n n 
C14 O16 ASE doub 66 n n 
C15 H151 ASE sing 67 n n 
C15 H152 ASE sing 68 n n 
C15 H153 ASE sing 69 n n 
#
_atom_sites.entry_id                     4A6E 
_atom_sites.fract_transf_matrix[1][1]    0.00588 
_atom_sites.fract_transf_matrix[1][2]    0.003395 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006789 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007799 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1348 1348 ZN ZN . 
C 3 SAM A 1 1349 1349 SAM SAM . 
D 4 ASE A 1 1350 1350 ASE ASE . 
E 5 SO4 A 1 1351 1351 SO4 SO4 . 
F 5 SO4 A 1 1352 1352 SO4 SO4 . 
G 5 SO4 A 1 1353 1353 SO4 SO4 . 
H 5 SO4 A 1 1354 1354 SO4 SO4 . 
I 5 SO4 A 1 1355 1355 SO4 SO4 . 
J 5 SO4 A 1 1356 1356 SO4 SO4 . 
K 6 GOL A 1 1357 1357 GOL GOL . 
L 7 HOH A 1 2001 2001 HOH HOH . 
L 7 HOH A 2 2002 2002 HOH HOH . 
L 7 HOH A 3 2003 2003 HOH HOH . 
L 7 HOH A 4 2004 2004 HOH HOH . 
L 7 HOH A 5 2005 2005 HOH HOH . 
L 7 HOH A 6 2006 2006 HOH HOH . 
L 7 HOH A 7 2007 2007 HOH HOH . 
L 7 HOH A 8 2008 2008 HOH HOH . 
L 7 HOH A 9 2009 2009 HOH HOH . 
L 7 HOH A 10 2010 2010 HOH HOH . 
L 7 HOH A 11 2011 2011 HOH HOH . 
L 7 HOH A 12 2012 2012 HOH HOH . 
L 7 HOH A 13 2013 2013 HOH HOH . 
L 7 HOH A 14 2014 2014 HOH HOH . 
L 7 HOH A 15 2015 2015 HOH HOH . 
L 7 HOH A 16 2016 2016 HOH HOH . 
L 7 HOH A 17 2017 2017 HOH HOH . 
L 7 HOH A 18 2018 2018 HOH HOH . 
L 7 HOH A 19 2019 2019 HOH HOH . 
L 7 HOH A 20 2020 2020 HOH HOH . 
L 7 HOH A 21 2021 2021 HOH HOH . 
L 7 HOH A 22 2022 2022 HOH HOH . 
L 7 HOH A 23 2023 2023 HOH HOH . 
L 7 HOH A 24 2024 2024 HOH HOH . 
L 7 HOH A 25 2025 2025 HOH HOH . 
L 7 HOH A 26 2026 2026 HOH HOH . 
L 7 HOH A 27 2027 2027 HOH HOH . 
L 7 HOH A 28 2028 2028 HOH HOH . 
L 7 HOH A 29 2029 2029 HOH HOH . 
L 7 HOH A 30 2030 2030 HOH HOH . 
L 7 HOH A 31 2031 2031 HOH HOH . 
L 7 HOH A 32 2032 2032 HOH HOH . 
L 7 HOH A 33 2033 2033 HOH HOH . 
L 7 HOH A 34 2034 2034 HOH HOH . 
L 7 HOH A 35 2035 2035 HOH HOH . 
L 7 HOH A 36 2036 2036 HOH HOH . 
L 7 HOH A 37 2037 2037 HOH HOH . 
L 7 HOH A 38 2038 2038 HOH HOH . 
L 7 HOH A 39 2039 2039 HOH HOH . 
L 7 HOH A 40 2040 2040 HOH HOH . 
L 7 HOH A 41 2041 2041 HOH HOH . 
L 7 HOH A 42 2042 2042 HOH HOH . 
L 7 HOH A 43 2043 2043 HOH HOH . 
L 7 HOH A 44 2044 2044 HOH HOH . 
L 7 HOH A 45 2045 2045 HOH HOH . 
L 7 HOH A 46 2046 2046 HOH HOH . 
L 7 HOH A 47 2047 2047 HOH HOH . 
L 7 HOH A 48 2048 2048 HOH HOH . 
L 7 HOH A 49 2049 2049 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ASE . . . D 4 0.875 30.677 44.093 1 59.39 ? C1 ASE 1350 A 1 
HETATM 2 C C2 ASE . . . D 4 1.973 31.121 43.359 1 56.96 ? C2 ASE 1350 A 1 
HETATM 3 C C3 ASE . . . D 4 1.887 32.442 42.876 1 59.74 ? C3 ASE 1350 A 1 
HETATM 4 C C4 ASE . . . D 4 -0.289 31.456 44.358 1 59.4 ? C4 ASE 1350 A 1 
HETATM 5 C C5 ASE . . . D 4 -0.347 32.769 43.881 1 60.33 ? C5 ASE 1350 A 1 
HETATM 6 C C6 ASE . . . D 4 0.723 33.296 43.135 1 60.7 ? C6 ASE 1350 A 1 
HETATM 7 C C7 ASE . . . D 4 2.816 33.269 42.083 1 58.49 ? C7 ASE 1350 A 1 
HETATM 8 C C8 ASE . . . D 4 2.232 34.5 41.922 1 58.86 ? C8 ASE 1350 A 1 
HETATM 9 N N9 ASE . . . D 4 0.977 34.546 42.531 1 60.51 ? N9 ASE 1350 A 1 
HETATM 10 O O10 ASE . . . D 4 0.932 29.44 44.609 1 60.24 ? O10 ASE 1350 A 1 
HETATM 11 C C11 ASE . . . D 4 4.178 32.788 41.692 1 55.7 ? C11 ASE 1350 A 1 
HETATM 12 C C12 ASE . . . D 4 5.13 33.239 42.88 1 53.24 ? C12 ASE 1350 A 1 
HETATM 13 N N13 ASE . . . D 4 5.341 34.704 42.819 1 48.79 ? N13 ASE 1350 A 1 
HETATM 14 C C14 ASE . . . D 4 5.012 35.534 43.906 1 47.45 ? C14 ASE 1350 A 1 
HETATM 15 C C15 ASE . . . D 4 5.221 37.04 43.744 1 42.7 ? C15 ASE 1350 A 1 
HETATM 16 O O16 ASE . . . D 4 4.544 35.101 45.011 1 45.76 ? O16 ASE 1350 A 1 
#
_model_server_stats.io_time_ms              95 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           362 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           16 
#