data_4A6O # _model_server_result.job_id FDbIGxzRjyD516PMRAYupg _model_server_result.datetime_utc '2024-11-25 01:24:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a6o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2345}' # _entry.id 4A6O # _exptl.entry_id 4A6O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4A6O _cell.length_a 89.71 _cell.length_b 49.89 _cell.length_c 63.17 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A6O _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,H 1 1 B,D,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NDG _pdbx_entity_branch_link.comp_id_2 GAL _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GAL 1 C 1 GAL A 2345 GAL 2 n C NDG 2 C 2 NDG A 2344 NDG 2 n D GAL 1 D 1 GAL B 2347 GAL 2 n D NDG 2 D 2 NDG B 2346 NDG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 GAL . C GAL 1 1_555 C C1 NDG . C NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 D O4 GAL . D GAL 1 1_555 D C1 NDG . D NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? metalc ? metalc1 A O ASN 48 A ASN 1230 1_555 E CA CA . A CA 2346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc2 A OD1 ASP 51 A ASP 1233 1_555 E CA CA . A CA 2346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc3 A O ASP 53 A ASP 1235 1_555 E CA CA . A CA 2346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc4 A O SER 56 A SER 1238 1_555 E CA CA . A CA 2346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc5 A OG SER 56 A SER 1238 1_555 E CA CA . A CA 2346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc6 A OD2 ASP 72 A ASP 1254 3_445 F CA CA . B CA 2344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc7 A OE1 GLU 74 A GLU 1256 3_445 F CA CA . B CA 2344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? metalc ? metalc8 A OE2 GLU 74 A GLU 1256 3_445 F CA CA . B CA 2344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc9 A O ALA 155 A ALA 1337 1_555 E CA CA . A CA 2346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc10 A OE1 GLU 156 A GLU 1338 1_555 E CA CA . A CA 2346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc11 B O ASN 48 B ASN 1230 1_555 G CA CA . B CA 2345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc12 B OD1 ASP 51 B ASP 1233 1_555 G CA CA . B CA 2345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc13 B O ASP 53 B ASP 1235 1_555 G CA CA . B CA 2345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc14 B O SER 56 B SER 1238 1_555 G CA CA . B CA 2345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc15 B OG SER 56 B SER 1238 1_555 G CA CA . B CA 2345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc16 B OD2 ASP 72 B ASP 1254 1_555 F CA CA . B CA 2344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc17 B OE1 GLU 74 B GLU 1256 1_555 F CA CA . B CA 2344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc18 B OE2 GLU 74 B GLU 1256 1_555 F CA CA . B CA 2344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc19 B O ALA 155 B ALA 1337 1_555 G CA CA . B CA 2345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc20 B OE1 GLU 156 B GLU 1338 1_555 G CA CA . B CA 2345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4A6O _atom_sites.fract_transf_matrix[1][1] 0.011147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA A 1 2346 2346 CA CA . F 3 CA B 1 2344 2344 CA CA . G 3 CA B 1 2345 2345 CA CA . H 4 HOH A 1 2001 2001 HOH HOH . H 4 HOH A 2 2002 2002 HOH HOH . H 4 HOH A 3 2003 2003 HOH HOH . H 4 HOH A 4 2004 2004 HOH HOH . H 4 HOH A 5 2005 2005 HOH HOH . H 4 HOH A 6 2006 2006 HOH HOH . H 4 HOH A 7 2007 2007 HOH HOH . H 4 HOH A 8 2008 2008 HOH HOH . H 4 HOH A 9 2009 2009 HOH HOH . H 4 HOH A 10 2010 2010 HOH HOH . H 4 HOH A 11 2011 2011 HOH HOH . H 4 HOH A 12 2012 2012 HOH HOH . H 4 HOH A 13 2013 2013 HOH HOH . H 4 HOH A 14 2014 2014 HOH HOH . H 4 HOH A 15 2015 2015 HOH HOH . H 4 HOH A 16 2016 2016 HOH HOH . H 4 HOH A 17 2017 2017 HOH HOH . H 4 HOH A 18 2018 2018 HOH HOH . H 4 HOH A 19 2019 2019 HOH HOH . H 4 HOH A 20 2020 2020 HOH HOH . H 4 HOH A 21 2021 2021 HOH HOH . H 4 HOH A 22 2022 2022 HOH HOH . H 4 HOH A 23 2023 2023 HOH HOH . H 4 HOH A 24 2024 2024 HOH HOH . H 4 HOH A 25 2025 2025 HOH HOH . H 4 HOH A 26 2026 2026 HOH HOH . H 4 HOH A 27 2027 2027 HOH HOH . H 4 HOH A 28 2028 2028 HOH HOH . H 4 HOH A 29 2029 2029 HOH HOH . H 4 HOH A 30 2030 2030 HOH HOH . H 4 HOH A 31 2031 2031 HOH HOH . H 4 HOH A 32 2032 2032 HOH HOH . H 4 HOH A 33 2033 2033 HOH HOH . H 4 HOH A 34 2034 2034 HOH HOH . H 4 HOH A 35 2035 2035 HOH HOH . H 4 HOH A 36 2036 2036 HOH HOH . H 4 HOH A 37 2037 2037 HOH HOH . H 4 HOH A 38 2038 2038 HOH HOH . H 4 HOH A 39 2039 2039 HOH HOH . H 4 HOH A 40 2040 2040 HOH HOH . H 4 HOH A 41 2041 2041 HOH HOH . H 4 HOH A 42 2042 2042 HOH HOH . H 4 HOH A 43 2043 2043 HOH HOH . H 4 HOH A 44 2044 2044 HOH HOH . H 4 HOH A 45 2045 2045 HOH HOH . H 4 HOH A 46 2046 2046 HOH HOH . H 4 HOH A 47 2047 2047 HOH HOH . H 4 HOH A 48 2048 2048 HOH HOH . H 4 HOH A 49 2049 2049 HOH HOH . H 4 HOH A 50 2050 2050 HOH HOH . H 4 HOH A 51 2051 2051 HOH HOH . H 4 HOH A 52 2052 2052 HOH HOH . H 4 HOH A 53 2053 2053 HOH HOH . H 4 HOH A 54 2054 2054 HOH HOH . H 4 HOH A 55 2055 2055 HOH HOH . H 4 HOH A 56 2056 2056 HOH HOH . H 4 HOH A 57 2057 2057 HOH HOH . I 4 HOH B 1 2001 2001 HOH HOH . I 4 HOH B 2 2002 2002 HOH HOH . I 4 HOH B 3 2003 2003 HOH HOH . I 4 HOH B 4 2004 2004 HOH HOH . I 4 HOH B 5 2005 2005 HOH HOH . I 4 HOH B 6 2006 2006 HOH HOH . I 4 HOH B 7 2007 2007 HOH HOH . I 4 HOH B 8 2008 2008 HOH HOH . I 4 HOH B 9 2009 2009 HOH HOH . I 4 HOH B 10 2010 2010 HOH HOH . I 4 HOH B 11 2011 2011 HOH HOH . I 4 HOH B 12 2012 2012 HOH HOH . I 4 HOH B 13 2013 2013 HOH HOH . I 4 HOH B 14 2014 2014 HOH HOH . I 4 HOH B 15 2015 2015 HOH HOH . I 4 HOH B 16 2016 2016 HOH HOH . I 4 HOH B 17 2017 2017 HOH HOH . I 4 HOH B 18 2018 2018 HOH HOH . I 4 HOH B 19 2019 2019 HOH HOH . I 4 HOH B 20 2020 2020 HOH HOH . I 4 HOH B 21 2021 2021 HOH HOH . I 4 HOH B 22 2022 2022 HOH HOH . I 4 HOH B 23 2023 2023 HOH HOH . I 4 HOH B 24 2024 2024 HOH HOH . I 4 HOH B 25 2025 2025 HOH HOH . I 4 HOH B 26 2026 2026 HOH HOH . I 4 HOH B 27 2027 2027 HOH HOH . I 4 HOH B 28 2028 2028 HOH HOH . I 4 HOH B 29 2029 2029 HOH HOH . I 4 HOH B 30 2030 2030 HOH HOH . I 4 HOH B 31 2031 2031 HOH HOH . I 4 HOH B 32 2032 2032 HOH HOH . I 4 HOH B 33 2033 2033 HOH HOH . I 4 HOH B 34 2034 2034 HOH HOH . I 4 HOH B 35 2035 2035 HOH HOH . I 4 HOH B 36 2036 2036 HOH HOH . I 4 HOH B 37 2037 2037 HOH HOH . I 4 HOH B 38 2038 2038 HOH HOH . I 4 HOH B 39 2039 2039 HOH HOH . I 4 HOH B 40 2040 2040 HOH HOH . I 4 HOH B 41 2041 2041 HOH HOH . I 4 HOH B 42 2042 2042 HOH HOH . I 4 HOH B 43 2043 2043 HOH HOH . I 4 HOH B 44 2044 2044 HOH HOH . I 4 HOH B 45 2045 2045 HOH HOH . I 4 HOH B 46 2046 2046 HOH HOH . I 4 HOH B 47 2047 2047 HOH HOH . I 4 HOH B 48 2048 2048 HOH HOH . I 4 HOH B 49 2049 2049 HOH HOH . I 4 HOH B 50 2050 2050 HOH HOH . I 4 HOH B 51 2051 2051 HOH HOH . I 4 HOH B 52 2052 2052 HOH HOH . I 4 HOH B 53 2053 2053 HOH HOH . I 4 HOH B 54 2054 2054 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -22.305 _atom_site.Cartn_y 9.881 _atom_site.Cartn_z -3.137 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 2345 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #