data_4A7L
#
_model_server_result.job_id            tecEl9uCJp0vRo-2YO6YoQ 
_model_server_result.datetime_utc      '2024-11-12 20:39:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4a7l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":376}' 
#
_entry.id    4A7L 
#
_exptl.entry_id    4A7L 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4A7L 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4A7L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 M N N 
? 4 O N N 
? 4 Q N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A N HIC 73 A HIC 73 1_555 A C GLU 72 A GLU 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale2 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 D N HIC 73 D HIC 73 1_555 D C GLU 72 D GLU 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale4 D C HIC 73 D HIC 73 1_555 D N GLY 74 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 E N HIC 73 E HIC 73 1_555 E C GLU 72 E GLU 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale6 E C HIC 73 E HIC 73 1_555 E N GLY 74 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 F N HIC 73 F HIC 73 1_555 F C GLU 72 F GLU 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale8 F C HIC 73 F HIC 73 1_555 F N GLY 74 F GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 I N HIC 73 I HIC 73 1_555 I C GLU 72 I GLU 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale10 I C HIC 73 I HIC 73 1_555 I N GLY 74 I GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4A7L 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 4 ADP A 1 376 376 ADP ADP . 
L 5 CA A 1 377 377 CA CA . 
M 4 ADP D 1 376 376 ADP ADP . 
N 5 CA D 1 377 377 CA CA . 
O 4 ADP E 1 376 376 ADP ADP . 
P 5 CA E 1 377 377 CA CA . 
Q 4 ADP F 1 376 376 ADP ADP . 
R 5 CA F 1 377 377 CA CA . 
S 4 ADP I 1 376 376 ADP ADP . 
T 5 CA I 1 377 377 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . S 4 149.082 164.386 271.931 1 10.75 ? PB ADP 376 I 1 
HETATM 2 O O1B ADP . . . S 4 148.828 165.345 270.846 1 11.21 ? O1B ADP 376 I 1 
HETATM 3 O O2B ADP . . . S 4 148.436 164.913 273.171 1 12.6 ? O2B ADP 376 I 1 
HETATM 4 O O3B ADP . . . S 4 148.794 162.9 271.606 1 10.01 ? O3B ADP 376 I 1 
HETATM 5 P PA ADP . . . S 4 151.798 165.499 271.862 1 11.15 ? PA ADP 376 I 1 
HETATM 6 O O1A ADP . . . S 4 152.224 165.535 270.452 1 11.64 ? O1A ADP 376 I 1 
HETATM 7 O O2A ADP . . . S 4 151.4 166.819 272.433 1 11.43 ? O2A ADP 376 I 1 
HETATM 8 O O3A ADP . . . S 4 150.656 164.442 272.135 1 10.78 ? O3A ADP 376 I 1 
HETATM 9 O O5' ADP . . . S 4 153.063 164.908 272.645 1 11.12 ? O5' ADP 376 I 1 
HETATM 10 C C5' ADP . . . S 4 152.957 164.795 274.108 1 12.09 ? C5' ADP 376 I 1 
HETATM 11 C C4' ADP . . . S 4 153.866 163.627 274.502 1 11.12 ? C4' ADP 376 I 1 
HETATM 12 O O4' ADP . . . S 4 155.208 163.941 274.037 1 12.23 ? O4' ADP 376 I 1 
HETATM 13 C C3' ADP . . . S 4 153.936 163.445 276.044 1 10.3 ? C3' ADP 376 I 1 
HETATM 14 O O3' ADP . . . S 4 153.976 162.017 276.282 1 11.87 ? O3' ADP 376 I 1 
HETATM 15 C C2' ADP . . . S 4 155.315 164.038 276.371 1 11.27 ? C2' ADP 376 I 1 
HETATM 16 O O2' ADP . . . S 4 155.92 163.465 277.544 1 10.52 ? O2' ADP 376 I 1 
HETATM 17 C C1' ADP . . . S 4 156.093 163.825 275.103 1 12.57 ? C1' ADP 376 I 1 
HETATM 18 N N9 ADP . . . S 4 157.248 164.689 274.924 1 10.99 ? N9 ADP 376 I 1 
HETATM 19 C C8 ADP . . . S 4 157.3 166.047 274.93 1 12.84 ? C8 ADP 376 I 1 
HETATM 20 N N7 ADP . . . S 4 158.486 166.578 274.791 1 13.9 ? N7 ADP 376 I 1 
HETATM 21 C C5 ADP . . . S 4 159.254 165.503 274.66 1 12.4 ? C5 ADP 376 I 1 
HETATM 22 C C6 ADP . . . S 4 160.625 165.407 274.492 1 13.6 ? C6 ADP 376 I 1 
HETATM 23 N N6 ADP . . . S 4 161.424 166.479 274.412 1 15.65 ? N6 ADP 376 I 1 
HETATM 24 N N1 ADP . . . S 4 161.116 164.179 274.419 1 13.52 ? N1 ADP 376 I 1 
HETATM 25 C C2 ADP . . . S 4 160.313 163.047 274.5 1 12.4 ? C2 ADP 376 I 1 
HETATM 26 N N3 ADP . . . S 4 158.998 163.052 274.676 1 11.79 ? N3 ADP 376 I 1 
HETATM 27 C C4 ADP . . . S 4 158.561 164.322 274.744 1 10.48 ? C4 ADP 376 I 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#