data_4A81 # _model_server_result.job_id HbKgD5F0t49zWqHz8swLTQ _model_server_result.datetime_utc '2024-11-22 06:58:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1161}' # _entry.id 4A81 # _exptl.entry_id 4A81 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.572 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.04 _cell.angle_gamma 90 _cell.entry_id 4A81 _cell.length_a 32.6 _cell.length_b 55.82 _cell.length_c 37.85 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 5 A TYR 5 1_555 F NA NA . A NA 1164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc2 A O SER 39 A SER 39 1_455 F NA NA . A NA 1164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc3 A O VAL 128 A VAL 128 1_555 F NA NA . A NA 1164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? # _chem_comp.formula 'C24 H40 O4' _chem_comp.formula_weight 392.572 _chem_comp.id DXC _chem_comp.mon_nstd_flag . _chem_comp.name '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DEOXYCHOLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DXC sing 106 n n C1 C6 DXC sing 107 n n C1 O2 DXC sing 108 n n C1 H1 DXC sing 109 n n C2 C3 DXC sing 110 n n C2 H22 DXC sing 111 n n C2 H21 DXC sing 112 n n C3 C4 DXC sing 113 n n C3 C7 DXC sing 114 n n C3 H3 DXC sing 115 n n C4 C5 DXC sing 116 n n C4 C10 DXC sing 117 n n C4 C18 DXC sing 118 n n C5 C6 DXC sing 119 n n C5 H52 DXC sing 120 n n C5 H51 DXC sing 121 n n C6 H62 DXC sing 122 n n C6 H61 DXC sing 123 n n C7 C8 DXC sing 124 n n C7 H72 DXC sing 125 n n C7 H71 DXC sing 126 n n C8 C9 DXC sing 127 n n C8 H82 DXC sing 128 n n C8 H81 DXC sing 129 n n C9 C10 DXC sing 130 n n C9 C11 DXC sing 131 n n C9 H9 DXC sing 132 n n C10 C14 DXC sing 133 n n C10 H10 DXC sing 134 n n C11 C12 DXC sing 135 n n C11 C15 DXC sing 136 n n C11 H11 DXC sing 137 n n C12 C13 DXC sing 138 n n C12 C17 DXC sing 139 n n C12 C20 DXC sing 140 n n C13 C14 DXC sing 141 n n C13 O1 DXC sing 142 n n C13 H13 DXC sing 143 n n C14 H142 DXC sing 144 n n C14 H141 DXC sing 145 n n C15 C16 DXC sing 146 n n C15 H152 DXC sing 147 n n C15 H151 DXC sing 148 n n C16 C17 DXC sing 149 n n C16 H162 DXC sing 150 n n C16 H161 DXC sing 151 n n C17 C19 DXC sing 152 n n C17 H17 DXC sing 153 n n C18 H183 DXC sing 154 n n C18 H182 DXC sing 155 n n C18 H181 DXC sing 156 n n C19 C21 DXC sing 157 n n C19 C24 DXC sing 158 n n C19 H19 DXC sing 159 n n O1 H1O1 DXC sing 160 n n O2 H2 DXC sing 161 n n C20 H203 DXC sing 162 n n C20 H202 DXC sing 163 n n C20 H201 DXC sing 164 n n C21 C22 DXC sing 165 n n C21 H212 DXC sing 166 n n C21 H211 DXC sing 167 n n C22 C23 DXC sing 168 n n C22 H222 DXC sing 169 n n C22 H221 DXC sing 170 n n C23 O3 DXC doub 171 n n C23 O4 DXC sing 172 n n O4 HO4 DXC sing 173 n n C24 H243 DXC sing 174 n n C24 H242 DXC sing 175 n n C24 H241 DXC sing 176 n n # _atom_sites.entry_id 4A81 _atom_sites.fract_transf_matrix[1][1] 0.030675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001629 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1160 1160 SO4 SO4 . C 3 DXC A 1 1161 1161 DXC DXC . D 4 2AN A 1 1162 1162 2AN 2AN . E 5 MPD A 1 1163 1163 MPD MPD . F 6 NA A 1 1164 1164 NA NA . G 7 HOH A 1 2001 2001 HOH HOH . G 7 HOH A 2 2002 2002 HOH HOH . G 7 HOH A 3 2003 2003 HOH HOH . G 7 HOH A 4 2004 2004 HOH HOH . G 7 HOH A 5 2005 2005 HOH HOH . G 7 HOH A 6 2006 2006 HOH HOH . G 7 HOH A 7 2007 2007 HOH HOH . G 7 HOH A 8 2008 2008 HOH HOH . G 7 HOH A 9 2009 2009 HOH HOH . G 7 HOH A 10 2010 2010 HOH HOH . G 7 HOH A 11 2011 2011 HOH HOH . G 7 HOH A 12 2012 2012 HOH HOH . G 7 HOH A 13 2013 2013 HOH HOH . G 7 HOH A 14 2014 2014 HOH HOH . G 7 HOH A 15 2015 2015 HOH HOH . G 7 HOH A 16 2016 2016 HOH HOH . G 7 HOH A 17 2017 2017 HOH HOH . G 7 HOH A 18 2018 2018 HOH HOH . G 7 HOH A 19 2019 2019 HOH HOH . G 7 HOH A 20 2020 2020 HOH HOH . G 7 HOH A 21 2021 2021 HOH HOH . G 7 HOH A 22 2022 2022 HOH HOH . G 7 HOH A 23 2023 2023 HOH HOH . G 7 HOH A 24 2024 2024 HOH HOH . G 7 HOH A 25 2025 2025 HOH HOH . G 7 HOH A 26 2026 2026 HOH HOH . G 7 HOH A 27 2027 2027 HOH HOH . G 7 HOH A 28 2028 2028 HOH HOH . G 7 HOH A 29 2029 2029 HOH HOH . G 7 HOH A 30 2030 2030 HOH HOH . G 7 HOH A 31 2031 2031 HOH HOH . G 7 HOH A 32 2032 2032 HOH HOH . G 7 HOH A 33 2033 2033 HOH HOH . G 7 HOH A 34 2034 2034 HOH HOH . G 7 HOH A 35 2035 2035 HOH HOH . G 7 HOH A 36 2036 2036 HOH HOH . G 7 HOH A 37 2037 2037 HOH HOH . G 7 HOH A 38 2038 2038 HOH HOH . G 7 HOH A 39 2039 2039 HOH HOH . G 7 HOH A 40 2040 2040 HOH HOH . G 7 HOH A 41 2041 2041 HOH HOH . G 7 HOH A 42 2042 2042 HOH HOH . G 7 HOH A 43 2043 2043 HOH HOH . G 7 HOH A 44 2044 2044 HOH HOH . G 7 HOH A 45 2045 2045 HOH HOH . G 7 HOH A 46 2046 2046 HOH HOH . G 7 HOH A 47 2047 2047 HOH HOH . G 7 HOH A 48 2048 2048 HOH HOH . G 7 HOH A 49 2049 2049 HOH HOH . G 7 HOH A 50 2050 2050 HOH HOH . G 7 HOH A 51 2051 2051 HOH HOH . G 7 HOH A 52 2052 2052 HOH HOH . G 7 HOH A 53 2053 2053 HOH HOH . G 7 HOH A 54 2054 2054 HOH HOH . G 7 HOH A 55 2055 2055 HOH HOH . G 7 HOH A 56 2056 2056 HOH HOH . G 7 HOH A 57 2057 2057 HOH HOH . G 7 HOH A 58 2058 2058 HOH HOH . G 7 HOH A 59 2059 2059 HOH HOH . G 7 HOH A 60 2060 2060 HOH HOH . G 7 HOH A 61 2061 2061 HOH HOH . G 7 HOH A 62 2062 2062 HOH HOH . G 7 HOH A 63 2063 2063 HOH HOH . G 7 HOH A 64 2064 2064 HOH HOH . G 7 HOH A 65 2065 2065 HOH HOH . G 7 HOH A 66 2066 2066 HOH HOH . G 7 HOH A 67 2067 2067 HOH HOH . G 7 HOH A 68 2068 2068 HOH HOH . G 7 HOH A 69 2069 2069 HOH HOH . G 7 HOH A 70 2070 2070 HOH HOH . G 7 HOH A 71 2071 2071 HOH HOH . G 7 HOH A 72 2072 2072 HOH HOH . G 7 HOH A 73 2073 2073 HOH HOH . G 7 HOH A 74 2074 2074 HOH HOH . G 7 HOH A 75 2075 2075 HOH HOH . G 7 HOH A 76 2076 2076 HOH HOH . G 7 HOH A 77 2077 2077 HOH HOH . G 7 HOH A 78 2078 2078 HOH HOH . G 7 HOH A 79 2079 2079 HOH HOH . G 7 HOH A 80 2080 2080 HOH HOH . G 7 HOH A 81 2081 2081 HOH HOH . G 7 HOH A 82 2082 2082 HOH HOH . G 7 HOH A 83 2083 2083 HOH HOH . G 7 HOH A 84 2084 2084 HOH HOH . G 7 HOH A 85 2085 2085 HOH HOH . G 7 HOH A 86 2086 2086 HOH HOH . G 7 HOH A 87 2087 2087 HOH HOH . G 7 HOH A 88 2088 2088 HOH HOH . G 7 HOH A 89 2089 2089 HOH HOH . G 7 HOH A 90 2090 2090 HOH HOH . G 7 HOH A 91 2091 2091 HOH HOH . G 7 HOH A 92 2092 2092 HOH HOH . G 7 HOH A 93 2093 2093 HOH HOH . G 7 HOH A 94 2094 2094 HOH HOH . G 7 HOH A 95 2095 2095 HOH HOH . G 7 HOH A 96 2096 2096 HOH HOH . G 7 HOH A 97 2097 2097 HOH HOH . G 7 HOH A 98 2098 2098 HOH HOH . G 7 HOH A 99 2099 2099 HOH HOH . G 7 HOH A 100 2100 2100 HOH HOH . G 7 HOH A 101 2101 2101 HOH HOH . G 7 HOH A 102 2102 2102 HOH HOH . G 7 HOH A 103 2103 2103 HOH HOH . G 7 HOH A 104 2104 2104 HOH HOH . G 7 HOH A 105 2105 2105 HOH HOH . G 7 HOH A 106 2106 2106 HOH HOH . G 7 HOH A 107 2107 2107 HOH HOH . G 7 HOH A 108 2108 2108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DXC . . . C 3 6.326 1.336 15.172 1 33.37 ? C1 DXC 1161 A 1 HETATM 2 C C2 DXC . . . C 3 7.313 0.252 15.632 1 33.53 ? C2 DXC 1161 A 1 HETATM 3 C C3 DXC . . . C 3 8.598 0.902 16.179 1 30.41 ? C3 DXC 1161 A 1 HETATM 4 C C4 DXC . . . C 3 9.297 1.865 15.208 1 30.03 ? C4 DXC 1161 A 1 HETATM 5 C C5 DXC . . . C 3 8.256 2.917 14.809 1 31.83 ? C5 DXC 1161 A 1 HETATM 6 C C6 DXC . . . C 3 7.017 2.273 14.162 1 32.01 ? C6 DXC 1161 A 1 HETATM 7 C C7 DXC . . . C 3 9.508 -0.198 16.664 1 30.4 ? C7 DXC 1161 A 1 HETATM 8 C C8 DXC . . . C 3 10.34 -0.87 15.582 1 27.82 ? C8 DXC 1161 A 1 HETATM 9 C C9 DXC . . . C 3 10.928 0.063 14.523 1 29.08 ? C9 DXC 1161 A 1 HETATM 10 C C10 DXC . . . C 3 9.857 1.064 14.041 1 29.83 ? C10 DXC 1161 A 1 HETATM 11 C C11 DXC . . . C 3 11.274 -0.788 13.293 1 29.09 ? C11 DXC 1161 A 1 HETATM 12 C C12 DXC . . . C 3 11.863 -0.006 12.133 1 28.52 ? C12 DXC 1161 A 1 HETATM 13 C C13 DXC . . . C 3 10.859 1.08 11.696 1 29.16 ? C13 DXC 1161 A 1 HETATM 14 C C14 DXC . . . C 3 10.35 1.931 12.866 1 28.87 ? C14 DXC 1161 A 1 HETATM 15 C C15 DXC . . . C 3 12.161 -2.025 13.42 1 30.55 ? C15 DXC 1161 A 1 HETATM 16 C C16 DXC . . . C 3 12.612 -2.328 11.974 1 29.61 ? C16 DXC 1161 A 1 HETATM 17 C C17 DXC . . . C 3 12.073 -1.176 11.122 1 27.97 ? C17 DXC 1161 A 1 HETATM 18 C C18 DXC . . . C 3 10.48 2.589 15.848 1 30.46 ? C18 DXC 1161 A 1 HETATM 19 C C19 DXC . . . C 3 12.878 -0.905 9.831 1 28.26 ? C19 DXC 1161 A 1 HETATM 20 O O1 DXC . . . C 3 9.742 0.435 11.097 1 26.64 ? O1 DXC 1161 A 1 HETATM 21 O O2 DXC . . . C 3 5.096 0.739 14.66 1 34.76 ? O2 DXC 1161 A 1 HETATM 22 C C20 DXC . . . C 3 13.167 0.647 12.636 1 30.08 ? C20 DXC 1161 A 1 HETATM 23 C C21 DXC . . . C 3 13.241 -2.181 9.057 1 28.04 ? C21 DXC 1161 A 1 HETATM 24 C C22 DXC . . . C 3 14.662 -2.06 8.491 1 31.34 ? C22 DXC 1161 A 1 HETATM 25 C C23 DXC . . . C 3 15.786 -2.369 9.471 1 34.86 ? C23 DXC 1161 A 1 HETATM 26 O O3 DXC . . . C 3 15.55 -3.133 10.454 1 35.4 ? O3 DXC 1161 A 1 HETATM 27 O O4 DXC . . . C 3 16.934 -1.861 9.257 1 34.36 ? O4 DXC 1161 A 1 HETATM 28 C C24 DXC . . . C 3 12.126 0.045 8.888 1 25.91 ? C24 DXC 1161 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #