data_4A8F
#
_model_server_result.job_id            RcMPTRtU-NbJ8E3yW3iAvw 
_model_server_result.datetime_utc      '2024-10-11 14:21:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4a8f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1666}' 
#
_entry.id    4A8F 
#
_exptl.entry_id    4A8F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.25 
_cell.angle_gamma         90 
_cell.entry_id            4A8F 
_cell.length_a            105.915 
_cell.length_b            91.766 
_cell.length_c            140.461 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4A8F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G 1 1 
B,D,H,I,J 2 1 
C,K,L,M 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 K N N 
? 4 L N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     4A8F 
_atom_sites.fract_transf_matrix[1][1]    0.009442 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001878 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010897 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007259 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MG A 1 1665 1665 MG MG . 
F 4 ATP A 1 1666 1666 ATP ATP . 
G 4 ATP A 1 1667 1667 ATP ATP . 
H 4 ATP B 1 1665 1665 ATP ATP . 
I 4 ATP B 1 1666 1666 ATP ATP . 
J 3 MG B 1 1667 1667 MG MG . 
K 4 ATP C 1 1665 1665 ATP ATP . 
L 4 ATP C 1 1666 1666 ATP ATP . 
M 3 MG C 1 1667 1667 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . F 4 13.969 7.656 23.692 1 133.75 ? PG ATP 1666 A 1 
HETATM 2 O O1G ATP . . . F 4 14.345 9.015 24.597 1 132.86 ? O1G ATP 1666 A 1 
HETATM 3 O O2G ATP . . . F 4 13.709 7.953 22.076 1 130.58 ? O2G ATP 1666 A 1 
HETATM 4 O O3G ATP . . . F 4 14.945 6.392 23.944 1 131.29 ? O3G ATP 1666 A 1 
HETATM 5 P PB ATP . . . F 4 11.112 7.951 23.495 1 122.68 ? PB ATP 1666 A 1 
HETATM 6 O O1B ATP . . . F 4 10.89 9.583 23.856 1 121.45 ? O1B ATP 1666 A 1 
HETATM 7 O O2B ATP . . . F 4 11.242 7.503 21.911 1 123.08 ? O2B ATP 1666 A 1 
HETATM 8 O O3B ATP . . . F 4 12.438 7.27 24.183 1 128.63 ? O3B ATP 1666 A 1 
HETATM 9 P PA ATP . . . F 4 8.059 6.735 23.705 1 117.59 ? PA ATP 1666 A 1 
HETATM 10 O O1A ATP . . . F 4 7.773 7.823 22.295 1 117.19 ? O1A ATP 1666 A 1 
HETATM 11 O O2A ATP . . . F 4 7.838 5.11 23.718 1 118.86 ? O2A ATP 1666 A 1 
HETATM 12 O O3A ATP . . . F 4 9.867 6.876 23.948 1 123.91 ? O3A ATP 1666 A 1 
HETATM 13 O O5' ATP . . . F 4 7.375 7.278 25.253 1 114.98 ? O5' ATP 1666 A 1 
HETATM 14 C C5' ATP . . . F 4 8.282 7.57 26.427 1 105.84 ? C5' ATP 1666 A 1 
HETATM 15 C C4' ATP . . . F 4 9.104 6.276 26.694 1 104.26 ? C4' ATP 1666 A 1 
HETATM 16 O O4' ATP . . . F 4 10.634 6.212 26.347 1 102.27 ? O4' ATP 1666 A 1 
HETATM 17 C C3' ATP . . . F 4 8.621 5.227 27.794 1 103.39 ? C3' ATP 1666 A 1 
HETATM 18 O O3' ATP . . . F 4 7.355 4.523 27.331 1 104.05 ? O3' ATP 1666 A 1 
HETATM 19 C C2' ATP . . . F 4 9.988 4.288 27.882 1 103.59 ? C2' ATP 1666 A 1 
HETATM 20 O O2' ATP . . . F 4 9.88 2.822 27.616 1 104.59 ? O2' ATP 1666 A 1 
HETATM 21 C C1' ATP . . . F 4 11.125 4.812 26.804 1 101.14 ? C1' ATP 1666 A 1 
HETATM 22 N N9 ATP . . . F 4 12.31 4.939 27.63 1 96.84 ? N9 ATP 1666 A 1 
HETATM 23 C C8 ATP . . . F 4 12.584 4.022 28.597 1 94.74 ? C8 ATP 1666 A 1 
HETATM 24 N N7 ATP . . . F 4 13.763 4.351 29.182 1 95.49 ? N7 ATP 1666 A 1 
HETATM 25 C C5 ATP . . . F 4 14.312 5.554 28.633 1 93.04 ? C5 ATP 1666 A 1 
HETATM 26 C C6 ATP . . . F 4 15.566 6.364 28.896 1 91.6 ? C6 ATP 1666 A 1 
HETATM 27 N N6 ATP . . . F 4 16.461 5.837 29.868 1 89.71 ? N6 ATP 1666 A 1 
HETATM 28 N N1 ATP . . . F 4 15.794 7.596 28.075 1 91.39 ? N1 ATP 1666 A 1 
HETATM 29 C C2 ATP . . . F 4 14.825 7.938 27.123 1 91.41 ? C2 ATP 1666 A 1 
HETATM 30 N N3 ATP . . . F 4 13.59 7.191 26.827 1 93.54 ? N3 ATP 1666 A 1 
HETATM 31 C C4 ATP . . . F 4 13.363 5.977 27.606 1 94.04 ? C4 ATP 1666 A 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#