data_4A8F # _model_server_result.job_id HJ7RK5T1h8Slf8bLU5zYjA _model_server_result.datetime_utc '2024-10-11 14:24:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1666}' # _entry.id 4A8F # _exptl.entry_id 4A8F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.25 _cell.angle_gamma 90 _cell.entry_id 4A8F _cell.length_a 105.915 _cell.length_b 91.766 _cell.length_c 140.461 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,D,H,I,J 2 1 C,K,L,M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 K N N ? 4 L N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4A8F _atom_sites.fract_transf_matrix[1][1] 0.009442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001878 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 1665 1665 MG MG . F 4 ATP A 1 1666 1666 ATP ATP . G 4 ATP A 1 1667 1667 ATP ATP . H 4 ATP B 1 1665 1665 ATP ATP . I 4 ATP B 1 1666 1666 ATP ATP . J 3 MG B 1 1667 1667 MG MG . K 4 ATP C 1 1665 1665 ATP ATP . L 4 ATP C 1 1666 1666 ATP ATP . M 3 MG C 1 1667 1667 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 4 51.258 21.419 67.975 1 180.22 ? PG ATP 1666 B 1 HETATM 2 O O1G ATP . . . I 4 52.685 21.16 68.489 1 179.27 ? O1G ATP 1666 B 1 HETATM 3 O O2G ATP . . . I 4 50.244 20.289 68.234 1 177.84 ? O2G ATP 1666 B 1 HETATM 4 O O3G ATP . . . I 4 50.787 22.656 68.732 1 177.62 ? O3G ATP 1666 B 1 HETATM 5 P PB ATP . . . I 4 52.335 22.596 65.542 1 176.79 ? PB ATP 1666 B 1 HETATM 6 O O1B ATP . . . I 4 53.276 23.216 66.611 1 177.37 ? O1B ATP 1666 B 1 HETATM 7 O O2B ATP . . . I 4 51.426 23.646 64.84 1 176.54 ? O2B ATP 1666 B 1 HETATM 8 O O3B ATP . . . I 4 51.405 21.601 66.386 1 179.03 ? O3B ATP 1666 B 1 HETATM 9 P PA ATP . . . I 4 53.035 20.716 63.46 1 173.4 ? PA ATP 1666 B 1 HETATM 10 O O1A ATP . . . I 4 51.61 20.103 63.569 1 172.84 ? O1A ATP 1666 B 1 HETATM 11 O O2A ATP . . . I 4 54.033 19.566 63.672 1 174.17 ? O2A ATP 1666 B 1 HETATM 12 O O3A ATP . . . I 4 53.301 21.859 64.517 1 176.37 ? O3A ATP 1666 B 1 HETATM 13 O O5' ATP . . . I 4 53.341 21.486 62.068 1 173.75 ? O5' ATP 1666 B 1 HETATM 14 C C5' ATP . . . I 4 54.268 20.9 61.152 1 172.8 ? C5' ATP 1666 B 1 HETATM 15 C C4' ATP . . . I 4 55.56 21.697 61.062 1 172.7 ? C4' ATP 1666 B 1 HETATM 16 O O4' ATP . . . I 4 56.505 21.151 60.102 1 172.31 ? O4' ATP 1666 B 1 HETATM 17 C C3' ATP . . . I 4 55.478 23.174 60.696 1 172.32 ? C3' ATP 1666 B 1 HETATM 18 O O3' ATP . . . I 4 54.831 23.921 61.698 1 173.53 ? O3' ATP 1666 B 1 HETATM 19 C C2' ATP . . . I 4 56.969 23.439 60.709 1 172.72 ? C2' ATP 1666 B 1 HETATM 20 O O2' ATP . . . I 4 57.228 23.496 62.136 1 172.8 ? O2' ATP 1666 B 1 HETATM 21 C C1' ATP . . . I 4 57.588 22.16 60 1 171.55 ? C1' ATP 1666 B 1 HETATM 22 N N9 ATP . . . I 4 58.238 22.229 58.615 1 171.63 ? N9 ATP 1666 B 1 HETATM 23 C C8 ATP . . . I 4 57.554 21.824 57.484 1 171.35 ? C8 ATP 1666 B 1 HETATM 24 N N7 ATP . . . I 4 58.251 21.97 56.348 1 172.17 ? N7 ATP 1666 B 1 HETATM 25 C C5 ATP . . . I 4 59.509 22.497 56.665 1 170.8 ? C5 ATP 1666 B 1 HETATM 26 C C6 ATP . . . I 4 60.696 22.873 55.842 1 171.22 ? C6 ATP 1666 B 1 HETATM 27 N N6 ATP . . . I 4 60.771 22.744 54.449 1 170.91 ? N6 ATP 1666 B 1 HETATM 28 N N1 ATP . . . I 4 61.807 23.402 56.48 1 170.88 ? N1 ATP 1666 B 1 HETATM 29 C C2 ATP . . . I 4 61.692 23.561 57.804 1 170.49 ? C2 ATP 1666 B 1 HETATM 30 N N3 ATP . . . I 4 60.678 23.201 58.667 1 171.16 ? N3 ATP 1666 B 1 HETATM 31 C C4 ATP . . . I 4 59.547 22.679 58.088 1 171.03 ? C4 ATP 1666 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #