data_4A8K
#
_model_server_result.job_id            8-8bRwc-PYColcCm3P60GQ 
_model_server_result.datetime_utc      '2024-10-11 14:18:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4a8k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1666}' 
#
_entry.id    4A8K 
#
_exptl.entry_id    4A8K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.36 
_cell.angle_gamma         90 
_cell.entry_id            4A8K 
_cell.length_a            106.53 
_cell.length_b            93.028 
_cell.length_c            140.86 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4A8K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,G 1 1 
B,D,H,I 2 1 
C,E,J,K 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 I N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 455 A ASP 454 1_555 F MG MG . A MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc2 A OE1 GLU 492 A GLU 491 1_555 F MG MG . A MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc3 A O ALA 496 A ALA 495 1_555 F MG MG . A MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc4 B OD1 ASP 455 B ASP 454 1_555 H MG MG . B MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc5 B OE2 GLU 492 B GLU 491 1_555 H MG MG . B MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? 
metalc ? metalc6 B OE1 GLU 492 B GLU 491 1_555 H MG MG . B MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc7 B O ALA 496 B ALA 495 1_555 H MG MG . B MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc8 C OD1 ASP 455 C ASP 454 1_555 J MG MG . C MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc9 C OE1 GLU 492 C GLU 491 1_555 J MG MG . C MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc10 C O ALA 496 C ALA 495 1_555 J MG MG . C MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 239 n n 
PG O2G GTP sing 240 n n 
PG O3G GTP sing 241 n n 
PG O3B GTP sing 242 n n 
O2G HOG2 GTP sing 243 n n 
O3G HOG3 GTP sing 244 n n 
O3B PB GTP sing 245 n n 
PB O1B GTP doub 246 n n 
PB O2B GTP sing 247 n n 
PB O3A GTP sing 248 n n 
O2B HOB2 GTP sing 249 n n 
O3A PA GTP sing 250 n n 
PA O1A GTP doub 251 n n 
PA O2A GTP sing 252 n n 
PA O5' GTP sing 253 n n 
O2A HOA2 GTP sing 254 n n 
O5' C5' GTP sing 255 n n 
C5' C4' GTP sing 256 n n 
C5' H5' GTP sing 257 n n 
C5' "H5''" GTP sing 258 n n 
C4' O4' GTP sing 259 n n 
C4' C3' GTP sing 260 n n 
C4' H4' GTP sing 261 n n 
O4' C1' GTP sing 262 n n 
C3' O3' GTP sing 263 n n 
C3' C2' GTP sing 264 n n 
C3' H3' GTP sing 265 n n 
O3' HO3' GTP sing 266 n n 
C2' O2' GTP sing 267 n n 
C2' C1' GTP sing 268 n n 
C2' H2' GTP sing 269 n n 
O2' HO2' GTP sing 270 n n 
C1' N9 GTP sing 271 n n 
C1' H1' GTP sing 272 n n 
N9 C8 GTP sing 273 n y 
N9 C4 GTP sing 274 n y 
C8 N7 GTP doub 275 n y 
C8 H8 GTP sing 276 n n 
N7 C5 GTP sing 277 n y 
C5 C6 GTP sing 278 n n 
C5 C4 GTP doub 279 n y 
C6 O6 GTP doub 280 n n 
C6 N1 GTP sing 281 n n 
N1 C2 GTP sing 282 n n 
N1 HN1 GTP sing 283 n n 
C2 N2 GTP sing 284 n n 
C2 N3 GTP doub 285 n n 
N2 HN21 GTP sing 286 n n 
N2 HN22 GTP sing 287 n n 
N3 C4 GTP sing 288 n n 
#
_atom_sites.entry_id                     4A8K 
_atom_sites.fract_transf_matrix[1][1]    0.009387 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001886 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010749 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007241 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 MG A 1 1665 1665 MG MG . 
G 5 GTP A 1 1666 1666 GTP GTP . 
H 4 MG B 1 1665 1665 MG MG . 
I 5 GTP B 1 1666 1666 GTP GTP . 
J 4 MG C 1 1665 1665 MG MG . 
K 5 GTP C 1 1666 1666 GTP GTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . K 5 -51.53 -8.225 -6.22 1 187.17 ? PG GTP 1666 C 1 
HETATM 2 O O1G GTP . . . K 5 -51.005 -9.606 -6.085 1 189.17 ? O1G GTP 1666 C 1 
HETATM 3 O O2G GTP . . . K 5 -52.766 -8.016 -5.179 1 188.93 ? O2G GTP 1666 C 1 
HETATM 4 O O3G GTP . . . K 5 -51.996 -7.947 -7.742 1 187.66 ? O3G GTP 1666 C 1 
HETATM 5 O O3B GTP . . . K 5 -50.34 -7.156 -5.943 1 185.51 ? O3B GTP 1666 C 1 
HETATM 6 P PB GTP . . . K 5 -49.763 -7.165 -4.42 1 185.53 ? PB GTP 1666 C 1 
HETATM 7 O O1B GTP . . . K 5 -48.761 -8.263 -4.364 1 184.38 ? O1B GTP 1666 C 1 
HETATM 8 O O2B GTP . . . K 5 -50.958 -7.426 -3.35 1 185.56 ? O2B GTP 1666 C 1 
HETATM 9 O O3A GTP . . . K 5 -49.029 -5.711 -4.094 1 186 ? O3A GTP 1666 C 1 
HETATM 10 P PA GTP . . . K 5 -50.025 -4.422 -3.762 1 186.56 ? PA GTP 1666 C 1 
HETATM 11 O O1A GTP . . . K 5 -50.628 -4.559 -2.409 1 186.31 ? O1A GTP 1666 C 1 
HETATM 12 O O2A GTP . . . K 5 -51.267 -4.361 -4.809 1 186.4 ? O2A GTP 1666 C 1 
HETATM 13 O O5' GTP . . . K 5 -49.273 -2.957 -3.838 1 187.05 ? O5' GTP 1666 C 1 
HETATM 14 C C5' GTP . . . K 5 -47.831 -2.985 -3.982 1 187.84 ? C5' GTP 1666 C 1 
HETATM 15 C C4' GTP . . . K 5 -47.177 -1.564 -3.896 1 188.35 ? C4' GTP 1666 C 1 
HETATM 16 O O4' GTP . . . K 5 -47.962 -0.612 -3.113 1 186.46 ? O4' GTP 1666 C 1 
HETATM 17 C C3' GTP . . . K 5 -45.73 -1.56 -3.291 1 189.23 ? C3' GTP 1666 C 1 
HETATM 18 O O3' GTP . . . K 5 -44.716 -1.229 -4.249 1 191.66 ? O3' GTP 1666 C 1 
HETATM 19 C C2' GTP . . . K 5 -45.768 -0.567 -2.087 1 188.42 ? C2' GTP 1666 C 1 
HETATM 20 O O2' GTP . . . K 5 -44.606 0.282 -1.929 1 191.08 ? O2' GTP 1666 C 1 
HETATM 21 C C1' GTP . . . K 5 -47.084 0.228 -2.291 1 187.15 ? C1' GTP 1666 C 1 
HETATM 22 N N9 GTP . . . K 5 -47.696 0.553 -0.988 1 187.08 ? N9 GTP 1666 C 1 
HETATM 23 C C8 GTP . . . K 5 -48.983 0.282 -0.599 1 187.08 ? C8 GTP 1666 C 1 
HETATM 24 N N7 GTP . . . K 5 -49.176 0.7 0.611 1 187.8 ? N7 GTP 1666 C 1 
HETATM 25 C C5 GTP . . . K 5 -48.034 1.268 1.085 1 187.3 ? C5 GTP 1666 C 1 
HETATM 26 C C6 GTP . . . K 5 -47.656 1.891 2.322 1 188.05 ? C6 GTP 1666 C 1 
HETATM 27 O O6 GTP . . . K 5 -48.465 1.993 3.234 1 189.72 ? O6 GTP 1666 C 1 
HETATM 28 N N1 GTP . . . K 5 -46.364 2.373 2.446 1 188.4 ? N1 GTP 1666 C 1 
HETATM 29 C C2 GTP . . . K 5 -45.455 2.252 1.4 1 187.95 ? C2 GTP 1666 C 1 
HETATM 30 N N2 GTP . . . K 5 -44.175 2.729 1.531 1 188.92 ? N2 GTP 1666 C 1 
HETATM 31 N N3 GTP . . . K 5 -45.803 1.677 0.252 1 186.87 ? N3 GTP 1666 C 1 
HETATM 32 C C4 GTP . . . K 5 -47.063 1.181 0.055 1 186.27 ? C4 GTP 1666 C 1 
#
_model_server_stats.io_time_ms              153 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           32 
#