data_4A8M
#
_model_server_result.job_id            CFzcsHki7psz9rr98fswWw 
_model_server_result.datetime_utc      '2024-11-08 17:58:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4a8m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1665}' 
#
_entry.id    4A8M 
#
_exptl.entry_id    4A8M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.3 
_cell.angle_gamma         90 
_cell.entry_id            4A8M 
_cell.length_a            106.27 
_cell.length_b            92.06 
_cell.length_c            140.81 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4A8M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,E,F,G 1 1 
A,C,H,I,J 2 1 
D,K,L,M 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 455 P ASP 454 1_555 E MG MG . P MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc2 B OE1 GLU 492 P GLU 491 1_555 E MG MG . P MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc3 B O ALA 496 P ALA 495 1_555 E MG MG . P MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? 
metalc ? metalc4 C OD1 ASP 455 Q ASP 454 1_555 H MG MG . Q MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc5 C OE1 GLU 492 Q GLU 491 1_555 H MG MG . Q MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc6 C O ALA 496 Q ALA 495 1_555 H MG MG . Q MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc7 H MG MG . Q MG 1665 1_555 I O1G GTP . Q GTP 1666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc8 D OD1 ASP 455 R ASP 454 1_555 L MG MG . R MG 1666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
metalc ? metalc9 D OE1 GLU 492 R GLU 491 1_555 L MG MG . R MG 1666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc10 D O ALA 496 R ALA 495 1_555 L MG MG . R MG 1666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 288 n n 
PG O2G GTP sing 289 n n 
PG O3G GTP sing 290 n n 
PG O3B GTP sing 291 n n 
O2G HOG2 GTP sing 292 n n 
O3G HOG3 GTP sing 293 n n 
O3B PB GTP sing 294 n n 
PB O1B GTP doub 295 n n 
PB O2B GTP sing 296 n n 
PB O3A GTP sing 297 n n 
O2B HOB2 GTP sing 298 n n 
O3A PA GTP sing 299 n n 
PA O1A GTP doub 300 n n 
PA O2A GTP sing 301 n n 
PA O5' GTP sing 302 n n 
O2A HOA2 GTP sing 303 n n 
O5' C5' GTP sing 304 n n 
C5' C4' GTP sing 305 n n 
C5' H5' GTP sing 306 n n 
C5' "H5''" GTP sing 307 n n 
C4' O4' GTP sing 308 n n 
C4' C3' GTP sing 309 n n 
C4' H4' GTP sing 310 n n 
O4' C1' GTP sing 311 n n 
C3' O3' GTP sing 312 n n 
C3' C2' GTP sing 313 n n 
C3' H3' GTP sing 314 n n 
O3' HO3' GTP sing 315 n n 
C2' O2' GTP sing 316 n n 
C2' C1' GTP sing 317 n n 
C2' H2' GTP sing 318 n n 
O2' HO2' GTP sing 319 n n 
C1' N9 GTP sing 320 n n 
C1' H1' GTP sing 321 n n 
N9 C8 GTP sing 322 n y 
N9 C4 GTP sing 323 n y 
C8 N7 GTP doub 324 n y 
C8 H8 GTP sing 325 n n 
N7 C5 GTP sing 326 n y 
C5 C6 GTP sing 327 n n 
C5 C4 GTP doub 328 n y 
C6 O6 GTP doub 329 n n 
C6 N1 GTP sing 330 n n 
N1 C2 GTP sing 331 n n 
N1 HN1 GTP sing 332 n n 
C2 N2 GTP sing 333 n n 
C2 N3 GTP doub 334 n n 
N2 HN21 GTP sing 335 n n 
N2 HN22 GTP sing 336 n n 
N3 C4 GTP sing 337 n n 
#
_atom_sites.entry_id                     4A8M 
_atom_sites.fract_transf_matrix[1][1]    0.00941 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00188 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010862 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007242 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MG P 1 1665 1665 MG MG . 
F 4 GTP P 1 1666 1666 GTP GTP . 
G 5 ATP P 1 1667 1667 ATP ATP . 
H 3 MG Q 1 1665 1665 MG MG . 
I 4 GTP Q 1 1666 1666 GTP GTP . 
J 5 ATP Q 1 1667 1667 ATP ATP . 
K 4 GTP R 1 1665 1665 GTP GTP . 
L 3 MG R 1 1666 1666 MG MG . 
M 5 ATP R 1 1667 1667 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . K 4 -53.886 2.965 -4.518 1 146.4 ? PG GTP 1665 R 1 
HETATM 2 O O1G GTP . . . K 4 -54.209 3.935 -3.44 1 148.27 ? O1G GTP 1665 R 1 
HETATM 3 O O2G GTP . . . K 4 -53.377 3.808 -5.744 1 147.37 ? O2G GTP 1665 R 1 
HETATM 4 O O3G GTP . . . K 4 -55.131 2.231 -5.1 1 146.78 ? O3G GTP 1665 R 1 
HETATM 5 O O3B GTP . . . K 4 -52.972 1.669 -4.071 1 147.1 ? O3B GTP 1665 R 1 
HETATM 6 P PB GTP . . . K 4 -52.604 1.36 -2.467 1 147.35 ? PB GTP 1665 R 1 
HETATM 7 O O1B GTP . . . K 4 -52.133 -0.072 -2.367 1 146.31 ? O1B GTP 1665 R 1 
HETATM 8 O O2B GTP . . . K 4 -53.883 1.447 -1.456 1 147.37 ? O2B GTP 1665 R 1 
HETATM 9 O O3A GTP . . . K 4 -51.389 2.461 -2.007 1 148.56 ? O3A GTP 1665 R 1 
HETATM 10 P PA GTP . . . K 4 -51.413 3.23 -0.491 1 148.59 ? PA GTP 1665 R 1 
HETATM 11 O O1A GTP . . . K 4 -50.142 4.044 -0.398 1 148.92 ? O1A GTP 1665 R 1 
HETATM 12 O O2A GTP . . . K 4 -52.587 4.353 -0.327 1 148.73 ? O2A GTP 1665 R 1 
HETATM 13 O O5' GTP . . . K 4 -51.593 2.042 0.705 1 149.72 ? O5' GTP 1665 R 1 
HETATM 14 C C5' GTP . . . K 4 -50.405 1.202 1.04 1 150.22 ? C5' GTP 1665 R 1 
HETATM 15 C C4' GTP . . . K 4 -49.54 0.589 -0.134 1 150.83 ? C4' GTP 1665 R 1 
HETATM 16 O O4' GTP . . . K 4 -48.359 1.404 -0.533 1 148.89 ? O4' GTP 1665 R 1 
HETATM 17 C C3' GTP . . . K 4 -49.053 -0.891 0.082 1 151.44 ? C3' GTP 1665 R 1 
HETATM 18 O O3' GTP . . . K 4 -50.007 -1.834 -0.462 1 153.96 ? O3' GTP 1665 R 1 
HETATM 19 C C2' GTP . . . K 4 -47.672 -0.893 -0.653 1 150.91 ? C2' GTP 1665 R 1 
HETATM 20 O O2' GTP . . . K 4 -47.613 -1.84 -1.713 1 153.31 ? O2' GTP 1665 R 1 
HETATM 21 C C1' GTP . . . K 4 -47.534 0.512 -1.324 1 149.38 ? C1' GTP 1665 R 1 
HETATM 22 N N9 GTP . . . K 4 -46.138 0.946 -1.285 1 149.55 ? N9 GTP 1665 R 1 
HETATM 23 C C8 GTP . . . K 4 -45.24 1.024 -2.317 1 149.53 ? C8 GTP 1665 R 1 
HETATM 24 N N7 GTP . . . K 4 -44.077 1.421 -1.86 1 150.24 ? N7 GTP 1665 R 1 
HETATM 25 C C5 GTP . . . K 4 -44.155 1.607 -0.515 1 149.63 ? C5 GTP 1665 R 1 
HETATM 26 C C6 GTP . . . K 4 -43.24 2.03 0.513 1 150.38 ? C6 GTP 1665 R 1 
HETATM 27 O O6 GTP . . . K 4 -42.065 2.341 0.241 1 151.9 ? O6 GTP 1665 R 1 
HETATM 28 N N1 GTP . . . K 4 -43.755 2.096 1.811 1 150.72 ? N1 GTP 1665 R 1 
HETATM 29 C C2 GTP . . . K 4 -45.101 1.771 2.089 1 150.27 ? C2 GTP 1665 R 1 
HETATM 30 N N2 GTP . . . K 4 -45.64 1.842 3.351 1 151.24 ? N2 GTP 1665 R 1 
HETATM 31 N N3 GTP . . . K 4 -45.921 1.384 1.136 1 149.22 ? N3 GTP 1665 R 1 
HETATM 32 C C4 GTP . . . K 4 -45.497 1.302 -0.145 1 148.69 ? C4 GTP 1665 R 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#