data_4A8M # _model_server_result.job_id jsWyrGo8SDCQMfb2MldCrQ _model_server_result.datetime_utc '2024-11-08 17:56:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1667}' # _entry.id 4A8M # _exptl.entry_id 4A8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.3 _cell.angle_gamma 90 _cell.entry_id 4A8M _cell.length_a 106.27 _cell.length_b 92.06 _cell.length_c 140.81 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,E,F,G 1 1 A,C,H,I,J 2 1 D,K,L,M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 455 P ASP 454 1_555 E MG MG . P MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 B OE1 GLU 492 P GLU 491 1_555 E MG MG . P MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc3 B O ALA 496 P ALA 495 1_555 E MG MG . P MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc4 C OD1 ASP 455 Q ASP 454 1_555 H MG MG . Q MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc5 C OE1 GLU 492 Q GLU 491 1_555 H MG MG . Q MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc6 C O ALA 496 Q ALA 495 1_555 H MG MG . Q MG 1665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc7 H MG MG . Q MG 1665 1_555 I O1G GTP . Q GTP 1666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc8 D OD1 ASP 455 R ASP 454 1_555 L MG MG . R MG 1666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc9 D OE1 GLU 492 R GLU 491 1_555 L MG MG . R MG 1666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc10 D O ALA 496 R ALA 495 1_555 L MG MG . R MG 1666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4A8M _atom_sites.fract_transf_matrix[1][1] 0.00941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00188 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG P 1 1665 1665 MG MG . F 4 GTP P 1 1666 1666 GTP GTP . G 5 ATP P 1 1667 1667 ATP ATP . H 3 MG Q 1 1665 1665 MG MG . I 4 GTP Q 1 1666 1666 GTP GTP . J 5 ATP Q 1 1667 1667 ATP ATP . K 4 GTP R 1 1665 1665 GTP GTP . L 3 MG R 1 1666 1666 MG MG . M 5 ATP R 1 1667 1667 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 5 54.305 21.886 63.581 1 170.82 ? PG ATP 1667 Q 1 HETATM 2 O O1G ATP . . . J 5 53.382 23.12 63.399 1 171.69 ? O1G ATP 1667 Q 1 HETATM 3 O O2G ATP . . . J 5 55.352 22.163 64.691 1 170.6 ? O2G ATP 1667 Q 1 HETATM 4 O O3G ATP . . . J 5 55.113 21.593 62.183 1 171.01 ? O3G ATP 1667 Q 1 HETATM 5 P PB ATP . . . J 5 52.195 20.619 65.004 1 170.6 ? PB ATP 1667 Q 1 HETATM 6 O O1B ATP . . . J 5 51.313 21.889 64.79 1 170.98 ? O1B ATP 1667 Q 1 HETATM 7 O O2B ATP . . . J 5 51.511 19.25 64.757 1 170.35 ? O2B ATP 1667 Q 1 HETATM 8 O O3B ATP . . . J 5 53.363 20.654 63.947 1 171.17 ? O3B ATP 1667 Q 1 HETATM 9 P PA ATP . . . J 5 51.989 20.79 67.911 1 175.66 ? PA ATP 1667 Q 1 HETATM 10 O O1A ATP . . . J 5 53.048 20.683 69.02 1 173.27 ? O1A ATP 1667 Q 1 HETATM 11 O O2A ATP . . . J 5 51.219 22.097 68.046 1 173.53 ? O2A ATP 1667 Q 1 HETATM 12 O O3A ATP . . . J 5 52.737 20.711 66.504 1 173.66 ? O3A ATP 1667 Q 1 HETATM 13 O O5' ATP . . . J 5 51.01 19.619 68.035 1 174.35 ? O5' ATP 1667 Q 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #