data_4A98 # _model_server_result.job_id bHuR2kA-eP3PCrPWVk5qXA _model_server_result.datetime_utc '2024-11-15 09:41:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1318}' # _entry.id 4A98 # _exptl.entry_id 4A98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 432.329 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-BROMO-1-[2-(DIETHYLAMINO)ETHYL]-5-(2-FLUOROPHENYL)-1,3-DIHYDRO-2H-1,4-BENZODIAZEPIN-2-ONE _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.1 _cell.angle_gamma 90 _cell.entry_id 4A98 _cell.length_a 106.4 _cell.length_b 268.2 _cell.length_c 111.4 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,L,M,N,O 1 1 F,G,H,I,J,P,Q,R,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id I _struct_conn.ptnr1_label_atom_id OE2 _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 140 _struct_conn.ptnr1_auth_asym_id I _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 150 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id T _struct_conn.ptnr2_label_atom_id BR _struct_conn.ptnr2_label_comp_id BFZ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id J _struct_conn.ptnr2_auth_comp_id BFZ _struct_conn.ptnr2_auth_seq_id 1318 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.887 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H23 Br F N3 O' _chem_comp.formula_weight 432.329 _chem_comp.id BFZ _chem_comp.mon_nstd_flag . _chem_comp.name 7-BROMO-1-[2-(DIETHYLAMINO)ETHYL]-5-(2-FLUOROPHENYL)-1,3-DIHYDRO-2H-1,4-BENZODIAZEPIN-2-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BROMOFLURAZEPAM # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAT CAS BFZ sing 70 n n CAS NAR BFZ sing 71 n n NAR CAW BFZ sing 72 n n NAR CAQ BFZ sing 73 n n CAW CAX BFZ sing 74 n n CAQ CAP BFZ sing 75 n n CAP NAO BFZ sing 76 n n NAO C BFZ sing 77 n n NAO CAN BFZ sing 78 n n C O BFZ doub 79 n n C CA BFZ sing 80 n n CA N BFZ sing 81 n n N CAF BFZ doub 82 n n CAN CAV BFZ sing 83 n y CAN CAM BFZ doub 84 n y CAV CAZ BFZ doub 85 n y CAZ CAY BFZ sing 86 n y CAY BR BFZ sing 87 n n CAY CAU BFZ doub 88 n y CAU CAM BFZ sing 89 n y CAM CAF BFZ sing 90 n n CAF CAE BFZ sing 91 n n CAE CAL BFZ sing 92 n y CAE CAD BFZ doub 93 n y CAL CAK BFZ doub 94 n y CAK CAJ BFZ sing 95 n y CAJ CAC BFZ doub 96 n y CAC CAD BFZ sing 97 n y CAD FAA BFZ sing 98 n n CAT HAT1 BFZ sing 99 n n CAT HAT2 BFZ sing 100 n n CAT HAT3 BFZ sing 101 n n CAS HAS1 BFZ sing 102 n n CAS HAS2 BFZ sing 103 n n CAW HAW1 BFZ sing 104 n n CAW HAW2 BFZ sing 105 n n CAQ HAQ1 BFZ sing 106 n n CAQ HAQ2 BFZ sing 107 n n CAX HAX1 BFZ sing 108 n n CAX HAX2 BFZ sing 109 n n CAX HAX3 BFZ sing 110 n n CAP HAP1 BFZ sing 111 n n CAP HAP2 BFZ sing 112 n n CA HA1C BFZ sing 113 n n CA HA2C BFZ sing 114 n n CAV HAV BFZ sing 115 n n CAZ HAZ BFZ sing 116 n n CAU HAU BFZ sing 117 n n CAL HAL BFZ sing 118 n n CAK HAK BFZ sing 119 n n CAJ HAJ BFZ sing 120 n n CAC HAC BFZ sing 121 n n # _atom_sites.entry_id 4A98 _atom_sites.fract_transf_matrix[1][1] 0.009398 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003072 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 BFZ A 1 1318 1318 BFZ BFZ . L 2 BFZ B 1 1318 1318 BFZ BFZ . M 2 BFZ C 1 1318 1318 BFZ BFZ . N 2 BFZ D 1 1318 1318 BFZ BFZ . O 2 BFZ E 1 1318 1318 BFZ BFZ . P 2 BFZ F 1 1318 1318 BFZ BFZ . Q 2 BFZ G 1 1318 1318 BFZ BFZ . R 2 BFZ H 1 1318 1318 BFZ BFZ . S 2 BFZ I 1 1318 1318 BFZ BFZ . T 2 BFZ J 1 1318 1318 BFZ BFZ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAT BFZ . . . P 2 -110.345 -107.272 -7.626 0.8 109.44 ? CAT BFZ 1318 F 1 HETATM 2 C CAS BFZ . . . P 2 -110.752 -108.435 -6.709 0.8 284.75 ? CAS BFZ 1318 F 1 HETATM 3 N NAR BFZ . . . P 2 -111.745 -109.311 -7.363 0.8 300 ? NAR BFZ 1318 F 1 HETATM 4 C CAW BFZ . . . P 2 -113.082 -109.163 -6.75 0.8 154.67 ? CAW BFZ 1318 F 1 HETATM 5 C CAX BFZ . . . P 2 -114.122 -108.671 -7.768 0.8 60.67 ? CAX BFZ 1318 F 1 HETATM 6 C CAQ BFZ . . . P 2 -111.352 -110.728 -7.216 0.8 300 ? CAQ BFZ 1318 F 1 HETATM 7 C CAP BFZ . . . P 2 -109.84 -110.973 -7.423 0.8 46.11 ? CAP BFZ 1318 F 1 HETATM 8 N NAO BFZ . . . P 2 -109.25 -110.489 -8.706 0.8 300 ? NAO BFZ 1318 F 1 HETATM 9 C C BFZ . . . P 2 -109.94 -110.19 -9.834 0.8 300 ? C BFZ 1318 F 1 HETATM 10 O O BFZ . . . P 2 -111.163 -110.322 -9.842 0.8 250.4 ? O BFZ 1318 F 1 HETATM 11 C CA BFZ . . . P 2 -109.263 -109.724 -11.136 0.8 105.67 ? CA BFZ 1318 F 1 HETATM 12 N N BFZ . . . P 2 -108.41 -110.83 -11.591 0.8 237.26 ? N BFZ 1318 F 1 HETATM 13 C CAN BFZ . . . P 2 -107.918 -110.399 -8.668 0.8 91.37 ? CAN BFZ 1318 F 1 HETATM 14 C CAV BFZ . . . P 2 -107.445 -109.868 -7.476 0.8 210.61 ? CAV BFZ 1318 F 1 HETATM 15 C CAZ BFZ . . . P 2 -106.078 -109.721 -7.275 0.8 300 ? CAZ BFZ 1318 F 1 HETATM 16 C CAY BFZ . . . P 2 -105.184 -110.098 -8.265 0.8 264.18 ? CAY BFZ 1318 F 1 HETATM 17 BR BR BFZ . . . P 2 -103.343 -109.859 -7.942 0.8 187.09 ? BR BFZ 1318 F 1 HETATM 18 C CAU BFZ . . . P 2 -105.647 -110.644 -9.459 0.8 84.08 ? CAU BFZ 1318 F 1 HETATM 19 C CAM BFZ . . . P 2 -107.023 -110.822 -9.647 0.8 135.31 ? CAM BFZ 1318 F 1 HETATM 20 C CAF BFZ . . . P 2 -107.4 -111.334 -10.89 0.8 218.8 ? CAF BFZ 1318 F 1 HETATM 21 C CAE BFZ . . . P 2 -106.729 -112.403 -11.455 0.8 240.85 ? CAE BFZ 1318 F 1 HETATM 22 C CAL BFZ . . . P 2 -107.222 -113.711 -11.383 0.8 283.73 ? CAL BFZ 1318 F 1 HETATM 23 C CAK BFZ . . . P 2 -106.521 -114.764 -11.981 0.8 36.77 ? CAK BFZ 1318 F 1 HETATM 24 C CAJ BFZ . . . P 2 -105.338 -114.48 -12.669 0.8 28.45 ? CAJ BFZ 1318 F 1 HETATM 25 C CAC BFZ . . . P 2 -104.856 -113.167 -12.73 0.8 292.01 ? CAC BFZ 1318 F 1 HETATM 26 C CAD BFZ . . . P 2 -105.57 -112.12 -12.146 0.8 29.13 ? CAD BFZ 1318 F 1 HETATM 27 F FAA BFZ . . . P 2 -105.151 -110.837 -12.189 0.8 51.1 ? FAA BFZ 1318 F 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #