data_4A98 # _model_server_result.job_id J4lPGvw6BKruURRlWY-DLg _model_server_result.datetime_utc '2024-11-15 09:30:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1318}' # _entry.id 4A98 # _exptl.entry_id 4A98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 432.329 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-BROMO-1-[2-(DIETHYLAMINO)ETHYL]-5-(2-FLUOROPHENYL)-1,3-DIHYDRO-2H-1,4-BENZODIAZEPIN-2-ONE _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.1 _cell.angle_gamma 90 _cell.entry_id 4A98 _cell.length_a 106.4 _cell.length_b 268.2 _cell.length_c 111.4 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,L,M,N,O 1 1 F,G,H,I,J,P,Q,R,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id I _struct_conn.ptnr1_label_atom_id OE2 _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 140 _struct_conn.ptnr1_auth_asym_id I _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 150 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id T _struct_conn.ptnr2_label_atom_id BR _struct_conn.ptnr2_label_comp_id BFZ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id J _struct_conn.ptnr2_auth_comp_id BFZ _struct_conn.ptnr2_auth_seq_id 1318 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.887 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H23 Br F N3 O' _chem_comp.formula_weight 432.329 _chem_comp.id BFZ _chem_comp.mon_nstd_flag . _chem_comp.name 7-BROMO-1-[2-(DIETHYLAMINO)ETHYL]-5-(2-FLUOROPHENYL)-1,3-DIHYDRO-2H-1,4-BENZODIAZEPIN-2-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BROMOFLURAZEPAM # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAT CAS BFZ sing 70 n n CAS NAR BFZ sing 71 n n NAR CAW BFZ sing 72 n n NAR CAQ BFZ sing 73 n n CAW CAX BFZ sing 74 n n CAQ CAP BFZ sing 75 n n CAP NAO BFZ sing 76 n n NAO C BFZ sing 77 n n NAO CAN BFZ sing 78 n n C O BFZ doub 79 n n C CA BFZ sing 80 n n CA N BFZ sing 81 n n N CAF BFZ doub 82 n n CAN CAV BFZ sing 83 n y CAN CAM BFZ doub 84 n y CAV CAZ BFZ doub 85 n y CAZ CAY BFZ sing 86 n y CAY BR BFZ sing 87 n n CAY CAU BFZ doub 88 n y CAU CAM BFZ sing 89 n y CAM CAF BFZ sing 90 n n CAF CAE BFZ sing 91 n n CAE CAL BFZ sing 92 n y CAE CAD BFZ doub 93 n y CAL CAK BFZ doub 94 n y CAK CAJ BFZ sing 95 n y CAJ CAC BFZ doub 96 n y CAC CAD BFZ sing 97 n y CAD FAA BFZ sing 98 n n CAT HAT1 BFZ sing 99 n n CAT HAT2 BFZ sing 100 n n CAT HAT3 BFZ sing 101 n n CAS HAS1 BFZ sing 102 n n CAS HAS2 BFZ sing 103 n n CAW HAW1 BFZ sing 104 n n CAW HAW2 BFZ sing 105 n n CAQ HAQ1 BFZ sing 106 n n CAQ HAQ2 BFZ sing 107 n n CAX HAX1 BFZ sing 108 n n CAX HAX2 BFZ sing 109 n n CAX HAX3 BFZ sing 110 n n CAP HAP1 BFZ sing 111 n n CAP HAP2 BFZ sing 112 n n CA HA1C BFZ sing 113 n n CA HA2C BFZ sing 114 n n CAV HAV BFZ sing 115 n n CAZ HAZ BFZ sing 116 n n CAU HAU BFZ sing 117 n n CAL HAL BFZ sing 118 n n CAK HAK BFZ sing 119 n n CAJ HAJ BFZ sing 120 n n CAC HAC BFZ sing 121 n n # _atom_sites.entry_id 4A98 _atom_sites.fract_transf_matrix[1][1] 0.009398 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003072 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 BFZ A 1 1318 1318 BFZ BFZ . L 2 BFZ B 1 1318 1318 BFZ BFZ . M 2 BFZ C 1 1318 1318 BFZ BFZ . N 2 BFZ D 1 1318 1318 BFZ BFZ . O 2 BFZ E 1 1318 1318 BFZ BFZ . P 2 BFZ F 1 1318 1318 BFZ BFZ . Q 2 BFZ G 1 1318 1318 BFZ BFZ . R 2 BFZ H 1 1318 1318 BFZ BFZ . S 2 BFZ I 1 1318 1318 BFZ BFZ . T 2 BFZ J 1 1318 1318 BFZ BFZ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAT BFZ . . . S 2 -109.835 -104.641 -67.456 0.8 85.7 ? CAT BFZ 1318 I 1 HETATM 2 C CAS BFZ . . . S 2 -108.869 -103.545 -66.976 0.8 300 ? CAS BFZ 1318 I 1 HETATM 3 N NAR BFZ . . . S 2 -109.037 -103.314 -65.527 0.8 300 ? NAR BFZ 1318 I 1 HETATM 4 C CAW BFZ . . . S 2 -110.329 -102.642 -65.303 0.8 273.23 ? CAW BFZ 1318 I 1 HETATM 5 C CAX BFZ . . . S 2 -111.328 -103.63 -64.699 0.8 74.09 ? CAX BFZ 1318 I 1 HETATM 6 C CAQ BFZ . . . S 2 -107.963 -102.482 -64.929 0.8 43.7 ? CAQ BFZ 1318 I 1 HETATM 7 C CAP BFZ . . . S 2 -106.553 -103.003 -65.25 0.8 87.4 ? CAP BFZ 1318 I 1 HETATM 8 N NAO BFZ . . . S 2 -105.977 -103.746 -64.111 0.8 103.28 ? NAO BFZ 1318 I 1 HETATM 9 C C BFZ . . . S 2 -106.558 -104.886 -63.665 0.8 127.6 ? C BFZ 1318 I 1 HETATM 10 O O BFZ . . . S 2 -107.596 -105.252 -64.217 0.8 286 ? O BFZ 1318 I 1 HETATM 11 C CA BFZ . . . S 2 -106.049 -105.717 -62.477 0.8 139.04 ? CA BFZ 1318 I 1 HETATM 12 N N BFZ . . . S 2 -106.122 -104.833 -61.322 0.8 151.52 ? N BFZ 1318 I 1 HETATM 13 C CAN BFZ . . . S 2 -104.832 -103.273 -63.574 0.8 202.61 ? CAN BFZ 1318 I 1 HETATM 14 C CAV BFZ . . . S 2 -103.856 -102.853 -64.507 0.8 216.27 ? CAV BFZ 1318 I 1 HETATM 15 C CAZ BFZ . . . S 2 -102.591 -102.395 -64.089 0.8 6.08 ? CAZ BFZ 1318 I 1 HETATM 16 C CAY BFZ . . . S 2 -102.333 -102.422 -62.708 0.8 299.97 ? CAY BFZ 1318 I 1 HETATM 17 BR BR BFZ . . . S 2 -100.649 -101.805 -62.113 0.8 227.69 ? BR BFZ 1318 I 1 HETATM 18 C CAU BFZ . . . S 2 -103.282 -102.889 -61.772 0.8 43.64 ? CAU BFZ 1318 I 1 HETATM 19 C CAM BFZ . . . S 2 -104.552 -103.271 -62.209 0.8 60.75 ? CAM BFZ 1318 I 1 HETATM 20 C CAF BFZ . . . S 2 -105.446 -103.706 -61.222 0.8 125.41 ? CAF BFZ 1318 I 1 HETATM 21 C CAE BFZ . . . S 2 -105.756 -102.974 -60.09 0.8 188.13 ? CAE BFZ 1318 I 1 HETATM 22 C CAL BFZ . . . S 2 -106.91 -102.184 -60.004 0.8 133.22 ? CAL BFZ 1318 I 1 HETATM 23 C CAK BFZ . . . S 2 -107.223 -101.524 -58.806 0.8 63.98 ? CAK BFZ 1318 I 1 HETATM 24 C CAJ BFZ . . . S 2 -106.403 -101.701 -57.685 0.8 38.41 ? CAJ BFZ 1318 I 1 HETATM 25 C CAC BFZ . . . S 2 -105.275 -102.529 -57.783 0.8 98.31 ? CAC BFZ 1318 I 1 HETATM 26 C CAD BFZ . . . S 2 -104.974 -103.191 -58.984 0.8 115.74 ? CAD BFZ 1318 I 1 HETATM 27 F FAA BFZ . . . S 2 -103.924 -104.019 -59.174 0.8 94.02 ? FAA BFZ 1318 I 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #