data_4A9I # _model_server_result.job_id EsjhG-JgWNKK3D5QjUhIiw _model_server_result.datetime_utc '2024-11-06 14:36:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1188}' # _entry.id 4A9I # _exptl.entry_id 4A9I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 237.277 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[1-(PYRIDIN-2-YL)INDOLIZIN-3-YL]ETHAN-1-ONE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.85 _cell.angle_gamma 90 _cell.entry_id 4A9I _cell.length_a 114.232 _cell.length_b 55.531 _cell.length_c 67.975 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,K,L 1 1 C,I,J,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -5.747111 0 67.731613 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C15 H13 N2 O 1' _chem_comp.formula_weight 237.277 _chem_comp.id P9I _chem_comp.mon_nstd_flag . _chem_comp.name 1-[1-(PYRIDIN-2-YL)INDOLIZIN-3-YL]ETHAN-1-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C2 P9I sing 246 n n C2 C1 P9I sing 247 n n C2 C3 P9I doub 248 z n C3 N2 P9I sing 249 n n C3 C4 P9I sing 250 n n N2 C15 P9I sing 251 n y N2 C11 P9I doub 252 n y C15 C14 P9I doub 253 n y C14 C13 P9I sing 254 n y C13 C12 P9I doub 255 n y C12 C11 P9I sing 256 n y C11 C5 P9I sing 257 n n C5 C4 P9I doub 258 n n C5 C6 P9I sing 259 n n C6 N1 P9I doub 260 n y C6 C7 P9I sing 261 n y N1 C10 P9I sing 262 n y C10 C9 P9I doub 263 n y C9 C8 P9I sing 264 n y C8 C7 P9I doub 265 n y O H P9I sing 266 n n C1 H11C P9I sing 267 n n C1 H12C P9I sing 268 n n C1 H13C P9I sing 269 n n C4 H4 P9I sing 270 n n C15 H15 P9I sing 271 n n C14 H14 P9I sing 272 n n C13 H13 P9I sing 273 n n C12 H12 P9I sing 274 n n C7 H7 P9I sing 275 n n C10 H10 P9I sing 276 n n C9 H9 P9I sing 277 n n C8 H8 P9I sing 278 n n # _atom_sites.entry_id 4A9I _atom_sites.fract_transf_matrix[1][1] 0.008754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000743 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 P9I A 1 1185 1185 P9I P9I . E 3 SO4 A 1 1186 1186 SO4 SO4 . F 3 SO4 A 1 1187 1187 SO4 SO4 . G 4 EDO B 1 1187 1187 EDO EDO . H 2 P9I B 1 1188 1188 P9I P9I . I 2 P9I C 1 1183 1183 P9I P9I . J 3 SO4 C 1 1184 1184 SO4 SO4 . K 5 HOH A 1 2001 2001 HOH HOH . K 5 HOH A 2 2002 2002 HOH HOH . K 5 HOH A 3 2003 2003 HOH HOH . K 5 HOH A 4 2004 2004 HOH HOH . K 5 HOH A 5 2005 2005 HOH HOH . K 5 HOH A 6 2006 2006 HOH HOH . K 5 HOH A 7 2007 2007 HOH HOH . K 5 HOH A 8 2008 2008 HOH HOH . K 5 HOH A 9 2009 2009 HOH HOH . K 5 HOH A 10 2010 2010 HOH HOH . K 5 HOH A 11 2011 2011 HOH HOH . K 5 HOH A 12 2012 2012 HOH HOH . K 5 HOH A 13 2013 2013 HOH HOH . K 5 HOH A 14 2014 2014 HOH HOH . K 5 HOH A 15 2015 2015 HOH HOH . K 5 HOH A 16 2016 2016 HOH HOH . K 5 HOH A 17 2017 2017 HOH HOH . K 5 HOH A 18 2018 2018 HOH HOH . K 5 HOH A 19 2019 2019 HOH HOH . K 5 HOH A 20 2020 2020 HOH HOH . K 5 HOH A 21 2021 2021 HOH HOH . K 5 HOH A 22 2022 2022 HOH HOH . K 5 HOH A 23 2023 2023 HOH HOH . K 5 HOH A 24 2024 2024 HOH HOH . K 5 HOH A 25 2025 2025 HOH HOH . K 5 HOH A 26 2026 2026 HOH HOH . K 5 HOH A 27 2027 2027 HOH HOH . K 5 HOH A 28 2028 2028 HOH HOH . K 5 HOH A 29 2029 2029 HOH HOH . K 5 HOH A 30 2030 2030 HOH HOH . K 5 HOH A 31 2031 2031 HOH HOH . K 5 HOH A 32 2032 2032 HOH HOH . K 5 HOH A 33 2033 2033 HOH HOH . K 5 HOH A 34 2034 2034 HOH HOH . K 5 HOH A 35 2035 2035 HOH HOH . K 5 HOH A 36 2036 2036 HOH HOH . K 5 HOH A 37 2037 2037 HOH HOH . K 5 HOH A 38 2038 2038 HOH HOH . K 5 HOH A 39 2039 2039 HOH HOH . K 5 HOH A 40 2040 2040 HOH HOH . K 5 HOH A 41 2041 2041 HOH HOH . K 5 HOH A 42 2042 2042 HOH HOH . K 5 HOH A 43 2043 2043 HOH HOH . K 5 HOH A 44 2044 2044 HOH HOH . K 5 HOH A 45 2045 2045 HOH HOH . K 5 HOH A 46 2046 2046 HOH HOH . K 5 HOH A 47 2047 2047 HOH HOH . K 5 HOH A 48 2048 2048 HOH HOH . K 5 HOH A 49 2049 2049 HOH HOH . K 5 HOH A 50 2050 2050 HOH HOH . K 5 HOH A 51 2051 2051 HOH HOH . K 5 HOH A 52 2052 2052 HOH HOH . K 5 HOH A 53 2053 2053 HOH HOH . K 5 HOH A 54 2054 2054 HOH HOH . K 5 HOH A 55 2055 2055 HOH HOH . K 5 HOH A 56 2056 2056 HOH HOH . K 5 HOH A 57 2057 2057 HOH HOH . K 5 HOH A 58 2058 2058 HOH HOH . K 5 HOH A 59 2059 2059 HOH HOH . K 5 HOH A 60 2060 2060 HOH HOH . K 5 HOH A 61 2061 2061 HOH HOH . K 5 HOH A 62 2062 2062 HOH HOH . K 5 HOH A 63 2063 2063 HOH HOH . K 5 HOH A 64 2064 2064 HOH HOH . K 5 HOH A 65 2065 2065 HOH HOH . K 5 HOH A 66 2066 2066 HOH HOH . K 5 HOH A 67 2067 2067 HOH HOH . K 5 HOH A 68 2068 2068 HOH HOH . K 5 HOH A 69 2069 2069 HOH HOH . K 5 HOH A 70 2070 2070 HOH HOH . K 5 HOH A 71 2071 2071 HOH HOH . K 5 HOH A 72 2072 2072 HOH HOH . K 5 HOH A 73 2073 2073 HOH HOH . K 5 HOH A 74 2074 2074 HOH HOH . K 5 HOH A 75 2075 2075 HOH HOH . K 5 HOH A 76 2076 2076 HOH HOH . K 5 HOH A 77 2077 2077 HOH HOH . K 5 HOH A 78 2078 2078 HOH HOH . K 5 HOH A 79 2079 2079 HOH HOH . K 5 HOH A 80 2080 2080 HOH HOH . K 5 HOH A 81 2081 2081 HOH HOH . K 5 HOH A 82 2082 2082 HOH HOH . K 5 HOH A 83 2083 2083 HOH HOH . K 5 HOH A 84 2084 2084 HOH HOH . K 5 HOH A 85 2085 2085 HOH HOH . K 5 HOH A 86 2086 2086 HOH HOH . K 5 HOH A 87 2087 2087 HOH HOH . K 5 HOH A 88 2088 2088 HOH HOH . K 5 HOH A 89 2089 2089 HOH HOH . K 5 HOH A 90 2090 2090 HOH HOH . K 5 HOH A 91 2091 2091 HOH HOH . K 5 HOH A 92 2092 2092 HOH HOH . L 5 HOH B 1 2001 2001 HOH HOH . L 5 HOH B 2 2002 2002 HOH HOH . L 5 HOH B 3 2003 2003 HOH HOH . L 5 HOH B 4 2004 2004 HOH HOH . L 5 HOH B 5 2005 2005 HOH HOH . L 5 HOH B 6 2006 2006 HOH HOH . L 5 HOH B 7 2007 2007 HOH HOH . L 5 HOH B 8 2008 2008 HOH HOH . L 5 HOH B 9 2009 2009 HOH HOH . L 5 HOH B 10 2010 2010 HOH HOH . L 5 HOH B 11 2011 2011 HOH HOH . L 5 HOH B 12 2012 2012 HOH HOH . L 5 HOH B 13 2013 2013 HOH HOH . L 5 HOH B 14 2014 2014 HOH HOH . L 5 HOH B 15 2015 2015 HOH HOH . L 5 HOH B 16 2016 2016 HOH HOH . L 5 HOH B 17 2017 2017 HOH HOH . L 5 HOH B 18 2018 2018 HOH HOH . L 5 HOH B 19 2019 2019 HOH HOH . L 5 HOH B 20 2020 2020 HOH HOH . L 5 HOH B 21 2021 2021 HOH HOH . L 5 HOH B 22 2022 2022 HOH HOH . L 5 HOH B 23 2023 2023 HOH HOH . L 5 HOH B 24 2024 2024 HOH HOH . L 5 HOH B 25 2025 2025 HOH HOH . L 5 HOH B 26 2026 2026 HOH HOH . L 5 HOH B 27 2027 2027 HOH HOH . L 5 HOH B 28 2028 2028 HOH HOH . L 5 HOH B 29 2029 2029 HOH HOH . L 5 HOH B 30 2030 2030 HOH HOH . L 5 HOH B 31 2031 2031 HOH HOH . L 5 HOH B 32 2032 2032 HOH HOH . L 5 HOH B 33 2033 2033 HOH HOH . L 5 HOH B 34 2034 2034 HOH HOH . L 5 HOH B 35 2035 2035 HOH HOH . L 5 HOH B 36 2036 2036 HOH HOH . L 5 HOH B 37 2037 2037 HOH HOH . L 5 HOH B 38 2038 2038 HOH HOH . L 5 HOH B 39 2039 2039 HOH HOH . L 5 HOH B 40 2040 2040 HOH HOH . L 5 HOH B 41 2041 2041 HOH HOH . L 5 HOH B 42 2042 2042 HOH HOH . L 5 HOH B 43 2043 2043 HOH HOH . L 5 HOH B 44 2044 2044 HOH HOH . L 5 HOH B 45 2045 2045 HOH HOH . L 5 HOH B 46 2046 2046 HOH HOH . L 5 HOH B 47 2047 2047 HOH HOH . L 5 HOH B 48 2048 2048 HOH HOH . L 5 HOH B 49 2049 2049 HOH HOH . L 5 HOH B 50 2050 2050 HOH HOH . L 5 HOH B 51 2051 2051 HOH HOH . L 5 HOH B 52 2052 2052 HOH HOH . L 5 HOH B 53 2053 2053 HOH HOH . L 5 HOH B 54 2054 2054 HOH HOH . L 5 HOH B 55 2055 2055 HOH HOH . L 5 HOH B 56 2056 2056 HOH HOH . L 5 HOH B 57 2057 2057 HOH HOH . L 5 HOH B 58 2058 2058 HOH HOH . L 5 HOH B 59 2059 2059 HOH HOH . L 5 HOH B 60 2060 2060 HOH HOH . L 5 HOH B 61 2061 2061 HOH HOH . L 5 HOH B 62 2062 2062 HOH HOH . L 5 HOH B 63 2063 2063 HOH HOH . L 5 HOH B 64 2064 2064 HOH HOH . L 5 HOH B 65 2065 2065 HOH HOH . L 5 HOH B 66 2066 2066 HOH HOH . L 5 HOH B 67 2067 2067 HOH HOH . L 5 HOH B 68 2068 2068 HOH HOH . L 5 HOH B 69 2069 2069 HOH HOH . L 5 HOH B 70 2070 2070 HOH HOH . L 5 HOH B 71 2071 2071 HOH HOH . L 5 HOH B 72 2072 2072 HOH HOH . L 5 HOH B 73 2073 2073 HOH HOH . L 5 HOH B 74 2074 2074 HOH HOH . L 5 HOH B 75 2075 2075 HOH HOH . L 5 HOH B 76 2076 2076 HOH HOH . L 5 HOH B 77 2077 2077 HOH HOH . L 5 HOH B 78 2078 2078 HOH HOH . L 5 HOH B 79 2079 2079 HOH HOH . L 5 HOH B 80 2080 2080 HOH HOH . L 5 HOH B 81 2081 2081 HOH HOH . L 5 HOH B 82 2082 2082 HOH HOH . L 5 HOH B 83 2083 2083 HOH HOH . L 5 HOH B 84 2084 2084 HOH HOH . L 5 HOH B 85 2085 2085 HOH HOH . L 5 HOH B 86 2086 2086 HOH HOH . L 5 HOH B 87 2087 2087 HOH HOH . L 5 HOH B 88 2088 2088 HOH HOH . M 5 HOH C 1 2001 2001 HOH HOH . M 5 HOH C 2 2002 2002 HOH HOH . M 5 HOH C 3 2003 2003 HOH HOH . M 5 HOH C 4 2004 2004 HOH HOH . M 5 HOH C 5 2005 2005 HOH HOH . M 5 HOH C 6 2006 2006 HOH HOH . M 5 HOH C 7 2007 2007 HOH HOH . M 5 HOH C 8 2008 2008 HOH HOH . M 5 HOH C 9 2009 2009 HOH HOH . M 5 HOH C 10 2010 2010 HOH HOH . M 5 HOH C 11 2011 2011 HOH HOH . M 5 HOH C 12 2012 2012 HOH HOH . M 5 HOH C 13 2013 2013 HOH HOH . M 5 HOH C 14 2014 2014 HOH HOH . M 5 HOH C 15 2015 2015 HOH HOH . M 5 HOH C 16 2016 2016 HOH HOH . M 5 HOH C 17 2017 2017 HOH HOH . M 5 HOH C 18 2018 2018 HOH HOH . M 5 HOH C 19 2019 2019 HOH HOH . M 5 HOH C 20 2020 2020 HOH HOH . M 5 HOH C 21 2021 2021 HOH HOH . M 5 HOH C 22 2022 2022 HOH HOH . M 5 HOH C 23 2023 2023 HOH HOH . M 5 HOH C 24 2024 2024 HOH HOH . M 5 HOH C 25 2025 2025 HOH HOH . M 5 HOH C 26 2026 2026 HOH HOH . M 5 HOH C 27 2027 2027 HOH HOH . M 5 HOH C 28 2028 2028 HOH HOH . M 5 HOH C 29 2029 2029 HOH HOH . M 5 HOH C 30 2030 2030 HOH HOH . M 5 HOH C 31 2031 2031 HOH HOH . M 5 HOH C 32 2032 2032 HOH HOH . M 5 HOH C 33 2033 2033 HOH HOH . M 5 HOH C 34 2034 2034 HOH HOH . M 5 HOH C 35 2035 2035 HOH HOH . M 5 HOH C 36 2036 2036 HOH HOH . M 5 HOH C 37 2037 2037 HOH HOH . M 5 HOH C 38 2038 2038 HOH HOH . M 5 HOH C 39 2039 2039 HOH HOH . M 5 HOH C 40 2040 2040 HOH HOH . M 5 HOH C 41 2041 2041 HOH HOH . M 5 HOH C 42 2042 2042 HOH HOH . M 5 HOH C 43 2043 2043 HOH HOH . M 5 HOH C 44 2044 2044 HOH HOH . M 5 HOH C 45 2045 2045 HOH HOH . M 5 HOH C 46 2046 2046 HOH HOH . M 5 HOH C 47 2047 2047 HOH HOH . M 5 HOH C 48 2048 2048 HOH HOH . M 5 HOH C 49 2049 2049 HOH HOH . M 5 HOH C 50 2050 2050 HOH HOH . M 5 HOH C 51 2051 2051 HOH HOH . M 5 HOH C 52 2052 2052 HOH HOH . M 5 HOH C 53 2053 2053 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O P9I . . . H 2 39.674 7.335 1.211 1 50.82 ? O P9I 1188 B 1 HETATM 2 C C2 P9I . . . H 2 40.252 6.981 2.221 1 51.67 ? C2 P9I 1188 B 1 HETATM 3 C C1 P9I . . . H 2 39.635 7.215 3.571 1 48.35 ? C1 P9I 1188 B 1 HETATM 4 C C3 P9I . . . H 2 41.543 6.308 2.137 1 55.58 ? C3 P9I 1188 B 1 HETATM 5 N N2 P9I . . . H 2 42.052 5.888 0.881 1 57.61 ? N2 P9I 1188 B 1 HETATM 6 C C15 P9I . . . H 2 41.536 5.994 -0.405 1 58.16 ? C15 P9I 1188 B 1 HETATM 7 C C14 P9I . . . H 2 42.265 5.478 -1.467 1 58.76 ? C14 P9I 1188 B 1 HETATM 8 C C13 P9I . . . H 2 43.496 4.87 -1.223 1 59.57 ? C13 P9I 1188 B 1 HETATM 9 C C12 P9I . . . H 2 44.015 4.763 0.035 1 57.99 ? C12 P9I 1188 B 1 HETATM 10 C C11 P9I . . . H 2 43.284 5.273 1.128 1 58.6 ? C11 P9I 1188 B 1 HETATM 11 C C5 P9I . . . H 2 43.551 5.303 2.492 1 58.58 ? C5 P9I 1188 B 1 HETATM 12 C C4 P9I . . . H 2 42.469 5.947 3.104 1 56.93 ? C4 P9I 1188 B 1 HETATM 13 C C6 P9I . . . H 2 44.774 4.766 3.171 1 61.19 ? C6 P9I 1188 B 1 HETATM 14 N N1 P9I . . . H 2 44.976 5.155 4.442 1 62.04 ? N1 P9I 1188 B 1 HETATM 15 C C10 P9I . . . H 2 46.076 4.694 5.067 1 61.94 ? C10 P9I 1188 B 1 HETATM 16 C C9 P9I . . . H 2 47.005 3.862 4.469 1 62.75 ? C9 P9I 1188 B 1 HETATM 17 C C8 P9I . . . H 2 46.794 3.473 3.163 1 62.8 ? C8 P9I 1188 B 1 HETATM 18 C C7 P9I . . . H 2 45.671 3.948 2.493 1 61.73 ? C7 P9I 1188 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #