data_4A9R # _model_server_result.job_id xrAXn3dQuenRKBkA06CZag _model_server_result.datetime_utc '2024-10-18 06:23:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a9r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1514}' # _entry.id 4A9R # _exptl.entry_id 4A9R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.797 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-(4-CHLOROPHENOXY)PHENYL]-1H-BENZIMIDAZOLE-6-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4A9R _cell.length_a 90.84 _cell.length_b 90.84 _cell.length_c 93.35 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A9R _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -31.116667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H14 Cl N3 O2' _chem_comp.formula_weight 363.797 _chem_comp.id RU5 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-(4-CHLOROPHENOXY)PHENYL]-1H-BENZIMIDAZOLE-6-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 RU5 sing 289 n n C1 C2 RU5 sing 290 n n C1 OAB RU5 doub 291 n n O1 C12 RU5 sing 292 n n O1 C15 RU5 sing 293 n n C2 C3 RU5 doub 294 n y C2 C8 RU5 sing 295 n y C3 C4 RU5 sing 296 n y N3 C4 RU5 sing 297 n y N3 C5 RU5 sing 298 n y C4 C6 RU5 doub 299 n y N4 C5 RU5 doub 300 n y N4 C6 RU5 sing 301 n y C5 C9 RU5 sing 302 n n C6 C7 RU5 sing 303 n y C7 C8 RU5 doub 304 n y C9 C10 RU5 doub 305 n y C9 C14 RU5 sing 306 n y CLA C18 RU5 sing 307 n n C10 C11 RU5 sing 308 n y C11 C12 RU5 doub 309 n y C12 C13 RU5 sing 310 n y C13 C14 RU5 doub 311 n y C15 C16 RU5 doub 312 n y C15 C20 RU5 sing 313 n y C16 C17 RU5 sing 314 n y C17 C18 RU5 doub 315 n y C18 C19 RU5 sing 316 n y C19 C20 RU5 doub 317 n y N1 HN1 RU5 sing 318 n n N1 HN1A RU5 sing 319 n n C3 H3 RU5 sing 320 n n N3 HN3 RU5 sing 321 n n C7 H7 RU5 sing 322 n n C8 H8 RU5 sing 323 n n C10 H10 RU5 sing 324 n n C11 H11 RU5 sing 325 n n C13 H13 RU5 sing 326 n n C14 H14 RU5 sing 327 n n C16 H16 RU5 sing 328 n n C17 H17 RU5 sing 329 n n C19 H19 RU5 sing 330 n n C20 H20 RU5 sing 331 n n # _atom_sites.entry_id 4A9R _atom_sites.fract_transf_matrix[1][1] 0.011008 _atom_sites.fract_transf_matrix[1][2] 0.006356 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 1513 1513 NO3 NO3 . C 3 RU5 A 1 1514 1514 RU5 RU5 . D 4 EDO A 1 1515 1515 EDO EDO . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RU5 . . . C 3 -11.851 46.455 2.805 1 75.8 ? C1 RU5 1514 A 1 HETATM 2 N N1 RU5 . . . C 3 -10.814 45.548 2.354 1 89.82 ? N1 RU5 1514 A 1 HETATM 3 O O1 RU5 . . . C 3 -6.401 50.471 12.462 1 90.39 ? O1 RU5 1514 A 1 HETATM 4 C C2 RU5 . . . C 3 -11.738 47.109 4.177 1 64.39 ? C2 RU5 1514 A 1 HETATM 5 C C3 RU5 . . . C 3 -10.562 47.219 4.749 1 63.85 ? C3 RU5 1514 A 1 HETATM 6 N N3 RU5 . . . C 3 -9.34 48.121 6.948 1 65.02 ? N3 RU5 1514 A 1 HETATM 7 C C4 RU5 . . . C 3 -10.439 47.874 6.122 1 64.48 ? C4 RU5 1514 A 1 HETATM 8 N N4 RU5 . . . C 3 -11.071 48.907 8.041 1 60.43 ? N4 RU5 1514 A 1 HETATM 9 C C5 RU5 . . . C 3 -9.797 48.767 8.133 1 65 ? C5 RU5 1514 A 1 HETATM 10 C C6 RU5 . . . C 3 -11.503 48.327 6.731 1 64.41 ? C6 RU5 1514 A 1 HETATM 11 C C7 RU5 . . . C 3 -12.872 48.2 6.067 1 63.4 ? C7 RU5 1514 A 1 HETATM 12 C C8 RU5 . . . C 3 -12.98 47.635 4.885 1 59.97 ? C8 RU5 1514 A 1 HETATM 13 C C9 RU5 . . . C 3 -8.914 49.212 9.294 1 70.08 ? C9 RU5 1514 A 1 HETATM 14 CL CLA RU5 . . . C 3 -9.392 53.907 16.394 1 143.92 ? CLA RU5 1514 A 1 HETATM 15 C C10 RU5 . . . C 3 -9.514 49.492 10.669 1 73.01 ? C10 RU5 1514 A 1 HETATM 16 C C11 RU5 . . . C 3 -8.736 49.883 11.656 1 78.56 ? C11 RU5 1514 A 1 HETATM 17 C C12 RU5 . . . C 3 -7.24 50.069 11.42 1 82.2 ? C12 RU5 1514 A 1 HETATM 18 C C13 RU5 . . . C 3 -6.726 49.832 10.235 1 74.68 ? C13 RU5 1514 A 1 HETATM 19 C C14 RU5 . . . C 3 -7.626 49.377 9.093 1 73.35 ? C14 RU5 1514 A 1 HETATM 20 C C15 RU5 . . . C 3 -7.1 51.266 13.373 1 93.93 ? C15 RU5 1514 A 1 HETATM 21 C C16 RU5 . . . C 3 -7.789 50.626 14.574 1 89.34 ? C16 RU5 1514 A 1 HETATM 22 C C17 RU5 . . . C 3 -8.443 51.376 15.434 1 89.54 ? C17 RU5 1514 A 1 HETATM 23 C C18 RU5 . . . C 3 -8.508 52.886 15.23 1 95.86 ? C18 RU5 1514 A 1 HETATM 24 C C19 RU5 . . . C 3 -7.913 53.439 14.196 1 100.81 ? C19 RU5 1514 A 1 HETATM 25 C C20 RU5 . . . C 3 -7.155 52.568 13.199 1 100.57 ? C20 RU5 1514 A 1 HETATM 26 O OAB RU5 . . . C 3 -12.777 46.687 2.106 1 74.39 ? OAB RU5 1514 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #