data_4A9S # _model_server_result.job_id eYYHfIO1aUPv5mrQw2d7XA _model_server_result.datetime_utc '2025-03-05 18:57:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1515}' # _entry.id 4A9S # _exptl.entry_id 4A9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.351 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4-(3-HYDROXYPHENOXY)PHENYL)-1H-BENZO[D]IMIDAZOLE-5-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4A9S _cell.length_a 90.71 _cell.length_b 90.71 _cell.length_c 93.28 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 62.186667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H15 N3 O3' _chem_comp.formula_weight 345.351 _chem_comp.id RU9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4-(3-HYDROXYPHENOXY)PHENYL)-1H-BENZO[D]IMIDAZOLE-5-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 RU9 sing 280 n n C1 C2 RU9 sing 281 n n C1 OAB RU9 doub 282 n n O1 C12 RU9 sing 283 n n O1 C15 RU9 sing 284 n n C2 C3 RU9 sing 285 n y C2 C8 RU9 doub 286 n y C3 C4 RU9 doub 287 n y N3 C4 RU9 sing 288 n y N3 C5 RU9 sing 289 n y C4 C6 RU9 sing 290 n y N4 C5 RU9 doub 291 n y N4 C6 RU9 sing 292 n y C5 C9 RU9 sing 293 n n C6 C7 RU9 doub 294 n y C7 C8 RU9 sing 295 n y C9 C10 RU9 sing 296 n y C9 C14 RU9 doub 297 n y C10 C11 RU9 doub 298 n y C11 C12 RU9 sing 299 n y C12 C13 RU9 doub 300 n y C13 C14 RU9 sing 301 n y C15 C16 RU9 sing 302 n y C15 C20 RU9 doub 303 n y C16 C17 RU9 doub 304 n y C17 C18 RU9 sing 305 n y C18 C19 RU9 doub 306 n y C19 C20 RU9 sing 307 n y C19 OAC RU9 sing 308 n n N1 H11N RU9 sing 309 n n N1 H12N RU9 sing 310 n n C3 H3 RU9 sing 311 n n C8 H8 RU9 sing 312 n n N3 HA RU9 sing 313 n n C7 H7 RU9 sing 314 n n C10 H10 RU9 sing 315 n n C14 H14 RU9 sing 316 n n C11 H11 RU9 sing 317 n n C13 H13 RU9 sing 318 n n C16 H16 RU9 sing 319 n n C20 H20 RU9 sing 320 n n C17 H17 RU9 sing 321 n n C18 H18 RU9 sing 322 n n OAC HAC RU9 sing 323 n n # _atom_sites.entry_id 4A9S _atom_sites.fract_transf_matrix[1][1] 0.011024 _atom_sites.fract_transf_matrix[1][2] 0.006365 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 1514 1514 NO3 NO3 . C 3 RU9 A 1 1515 1515 RU9 RU9 . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RU9 . A . C 3 34.294 -33.443 12.597 0.5 61.14 ? C1 RU9 1515 A 1 HETATM 2 C C1 RU9 . B . C 3 34.357 -33.359 12.605 0.5 61.06 ? C1 RU9 1515 A 1 HETATM 3 N N1 RU9 . A . C 3 34.815 -32.48 13.55 0.5 57.6 ? N1 RU9 1515 A 1 HETATM 4 N N1 RU9 . B . C 3 34.832 -32.314 13.493 0.5 57.76 ? N1 RU9 1515 A 1 HETATM 5 O O1 RU9 . A . C 3 40.602 -30.775 2.874 0.5 84.34 ? O1 RU9 1515 A 1 HETATM 6 O O1 RU9 . B . C 3 40.636 -31.111 2.72 0.5 84.25 ? O1 RU9 1515 A 1 HETATM 7 C C2 RU9 . A . C 3 34.955 -33.593 11.229 0.5 59.78 ? C2 RU9 1515 A 1 HETATM 8 C C2 RU9 . B . C 3 34.995 -33.535 11.229 0.5 59.8 ? C2 RU9 1515 A 1 HETATM 9 C C3 RU9 . A . C 3 35.643 -32.6 10.703 0.5 59.92 ? C3 RU9 1515 A 1 HETATM 10 C C3 RU9 . B . C 3 35.691 -32.56 10.678 0.5 60.4 ? C3 RU9 1515 A 1 HETATM 11 N N3 RU9 . A . C 3 37.097 -31.92 8.546 0.5 65.34 ? N3 RU9 1515 A 1 HETATM 12 N N3 RU9 . B . C 3 37.122 -31.933 8.486 0.5 65.36 ? N3 RU9 1515 A 1 HETATM 13 C C4 RU9 . A . C 3 36.319 -32.773 9.342 0.5 62.51 ? C4 RU9 1515 A 1 HETATM 14 C C4 RU9 . B . C 3 36.341 -32.761 9.308 0.5 62.92 ? C4 RU9 1515 A 1 HETATM 15 N N4 RU9 . A . C 3 36.961 -33.798 7.419 0.5 66.13 ? N4 RU9 1515 A 1 HETATM 16 N N4 RU9 . B . C 3 36.932 -33.824 7.39 0.5 66.14 ? N4 RU9 1515 A 1 HETATM 17 C C5 RU9 . A . C 3 37.475 -32.622 7.36 0.5 67.23 ? C5 RU9 1515 A 1 HETATM 18 C C5 RU9 . B . C 3 37.453 -32.652 7.295 0.5 68.16 ? C5 RU9 1515 A 1 HETATM 19 C C6 RU9 . A . C 3 36.208 -33.914 8.706 0.5 64.53 ? C6 RU9 1515 A 1 HETATM 20 C C6 RU9 . B . C 3 36.2 -33.909 8.692 0.5 64.52 ? C6 RU9 1515 A 1 HETATM 21 C C7 RU9 . A . C 3 35.41 -35.065 9.319 0.5 63.04 ? C7 RU9 1515 A 1 HETATM 22 C C7 RU9 . B . C 3 35.394 -35.039 9.332 0.5 63.04 ? C7 RU9 1515 A 1 HETATM 23 C C8 RU9 . A . C 3 34.83 -34.916 10.487 0.5 59.86 ? C8 RU9 1515 A 1 HETATM 24 C C8 RU9 . B . C 3 34.835 -34.866 10.507 0.5 59.82 ? C8 RU9 1515 A 1 HETATM 25 C C9 RU9 . A . C 3 38.314 -32.101 6.196 0.5 73.41 ? C9 RU9 1515 A 1 HETATM 26 C C9 RU9 . B . C 3 38.296 -32.184 6.109 0.5 74.71 ? C9 RU9 1515 A 1 HETATM 27 C C10 RU9 . A . C 3 38.169 -32.781 4.839 0.5 76.22 ? C10 RU9 1515 A 1 HETATM 28 C C10 RU9 . B . C 3 38.323 -33.06 4.861 0.5 76.52 ? C10 RU9 1515 A 1 HETATM 29 C C11 RU9 . A . C 3 38.881 -32.367 3.817 0.5 79.2 ? C11 RU9 1515 A 1 HETATM 30 C C11 RU9 . B . C 3 39.048 -32.709 3.824 0.5 78.45 ? C11 RU9 1515 A 1 HETATM 31 C C12 RU9 . A . C 3 39.86 -31.207 3.982 0.5 81.28 ? C12 RU9 1515 A 1 HETATM 32 C C12 RU9 . B . C 3 39.871 -31.424 3.856 0.5 80.99 ? C12 RU9 1515 A 1 HETATM 33 C C13 RU9 . A . C 3 39.989 -30.619 5.156 0.5 77.75 ? C13 RU9 1515 A 1 HETATM 34 C C13 RU9 . B . C 3 39.855 -30.667 4.938 0.5 78.39 ? C13 RU9 1515 A 1 HETATM 35 C C14 RU9 . A . C 3 39.16 -31.101 6.348 0.5 75.16 ? C14 RU9 1515 A 1 HETATM 36 C C14 RU9 . B . C 3 39.011 -31.076 6.149 0.5 75.76 ? C14 RU9 1515 A 1 HETATM 37 C C15 RU9 . A . C 3 41.219 -31.871 2.255 0.5 84.2 ? C15 RU9 1515 A 1 HETATM 38 C C15 RU9 . B . C 3 41.243 -29.847 2.75 0.5 83.5 ? C15 RU9 1515 A 1 HETATM 39 C C16 RU9 . A . C 3 42.589 -32.35 2.733 0.5 85.38 ? C16 RU9 1515 A 1 HETATM 40 C C16 RU9 . B . C 3 40.677 -28.711 1.897 0.5 82.49 ? C16 RU9 1515 A 1 HETATM 41 C C17 RU9 . A . C 3 43.169 -33.381 2.156 0.5 83.89 ? C17 RU9 1515 A 1 HETATM 42 C C17 RU9 . B . C 3 41.264 -27.533 1.89 0.5 81.21 ? C17 RU9 1515 A 1 HETATM 43 C C18 RU9 . A . C 3 42.471 -34.101 1.004 0.5 82.66 ? C18 RU9 1515 A 1 HETATM 44 C C18 RU9 . B . C 3 42.519 -27.303 2.729 0.5 81.12 ? C18 RU9 1515 A 1 HETATM 45 C C19 RU9 . A . C 3 41.291 -33.689 0.591 0.5 82.91 ? C19 RU9 1515 A 1 HETATM 46 C C19 RU9 . B . C 3 43.012 -28.283 3.457 0.5 81.16 ? C19 RU9 1515 A 1 HETATM 47 C C20 RU9 . A . C 3 40.619 -32.492 1.26 0.5 81.1 ? C20 RU9 1515 A 1 HETATM 48 C C20 RU9 . B . C 3 42.333 -29.649 3.463 0.5 80.11 ? C20 RU9 1515 A 1 HETATM 49 O OAB RU9 . A . C 3 33.443 -34.203 12.925 0.5 63.81 ? OAB RU9 1515 A 1 HETATM 50 O OAB RU9 . B . C 3 33.57 -34.157 12.995 0.5 63.93 ? OAB RU9 1515 A 1 HETATM 51 O OAC RU9 . A . C 3 40.65 -34.355 -0.459 0.5 85.27 ? OAC RU9 1515 A 1 HETATM 52 O OAC RU9 . B . C 3 44.162 -28.074 4.227 0.5 81.93 ? OAC RU9 1515 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 52 #