data_4A9T # _model_server_result.job_id el3h5-yy-jofR9ipoIE67g _model_server_result.datetime_utc '2024-12-21 17:51:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1514}' # _entry.id 4A9T # _exptl.entry_id 4A9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.982 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4-{[1-(4-CHLOROBENZYL)PIPERIDIN-4-YL]METHOXY}PHENYL)-1H-BENZIMIDAZOLE-5-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4A9T _cell.length_a 91.01 _cell.length_b 91.01 _cell.length_c 93.5 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -31.166667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H27 Cl N4 O2' _chem_comp.formula_weight 474.982 _chem_comp.id A9T _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4-{[1-(4-CHLOROBENZYL)PIPERIDIN-4-YL]METHOXY}PHENYL)-1H-BENZIMIDAZOLE-5-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 A9T sing 1 n n C1 C2 A9T sing 2 n n C1 OAB A9T doub 3 n n O1 C12 A9T sing 4 n n O1 CAS A9T sing 5 n n C2 C3 A9T sing 6 n y C2 C8 A9T doub 7 n y C3 C4 A9T doub 8 n y N3 C4 A9T sing 9 n y N3 C5 A9T doub 10 n y C4 C6 A9T sing 11 n y N4 C5 A9T sing 12 n y N4 C6 A9T sing 13 n y C5 C9 A9T sing 14 n n C6 C7 A9T doub 15 n y C7 C8 A9T sing 16 n y C9 C10 A9T sing 17 n y C9 C14 A9T doub 18 n y C10 C11 A9T doub 19 n y C11 C12 A9T sing 20 n y C12 C13 A9T doub 21 n y C13 C14 A9T sing 22 n y C16 C17 A9T sing 23 n n C16 NBG A9T sing 24 n n C17 C18 A9T sing 25 n n C18 C19 A9T sing 26 n n C18 CAS A9T sing 27 n n C19 C20 A9T sing 28 n n C20 NBG A9T sing 29 n n C21 NBG A9T sing 30 n n C22 C23 A9T doub 31 n y C22 C21 A9T sing 32 n n C22 C27 A9T sing 33 n y C23 C24 A9T sing 34 n y C23 H23 A9T sing 35 n n C24 C25 A9T doub 36 n y C24 H24 A9T sing 37 n n C25 C26 A9T sing 38 n y C25 CL1 A9T sing 39 n n C26 C27 A9T doub 40 n y C26 H26 A9T sing 41 n n C21 H21 A9T sing 42 n n C21 H22 A9T sing 43 n n C27 H27 A9T sing 44 n n N1 H11N A9T sing 45 n n N1 H12N A9T sing 46 n n CAS HAS1 A9T sing 47 n n CAS HAS2 A9T sing 48 n n C3 H3 A9T sing 49 n n C8 H8 A9T sing 50 n n N4 H4 A9T sing 51 n n C7 H7 A9T sing 52 n n C10 H10 A9T sing 53 n n C14 H14 A9T sing 54 n n C11 H11 A9T sing 55 n n C13 H13 A9T sing 56 n n C16 H161 A9T sing 57 n n C16 H162 A9T sing 58 n n C17 H171 A9T sing 59 n n C17 H172 A9T sing 60 n n C18 H18 A9T sing 61 n n C19 H191 A9T sing 62 n n C19 H192 A9T sing 63 n n C20 H201 A9T sing 64 n n C20 H202 A9T sing 65 n n # _atom_sites.entry_id 4A9T _atom_sites.fract_transf_matrix[1][1] 0.010988 _atom_sites.fract_transf_matrix[1][2] 0.006344 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A9T A 1 1514 1514 A9T A9T . C 3 NO3 A 1 1515 1515 NO3 NO3 . D 4 EDO A 1 1516 1516 EDO EDO . E 4 EDO A 1 1517 1517 EDO EDO . F 4 EDO A 1 1518 1518 EDO EDO . G 5 HOH A 1 2001 2001 HOH HOH . G 5 HOH A 2 2002 2002 HOH HOH . G 5 HOH A 3 2003 2003 HOH HOH . G 5 HOH A 4 2004 2004 HOH HOH . G 5 HOH A 5 2005 2005 HOH HOH . G 5 HOH A 6 2006 2006 HOH HOH . G 5 HOH A 7 2007 2007 HOH HOH . G 5 HOH A 8 2008 2008 HOH HOH . G 5 HOH A 9 2009 2009 HOH HOH . G 5 HOH A 10 2010 2010 HOH HOH . G 5 HOH A 11 2011 2011 HOH HOH . G 5 HOH A 12 2012 2012 HOH HOH . G 5 HOH A 13 2013 2013 HOH HOH . G 5 HOH A 14 2014 2014 HOH HOH . G 5 HOH A 15 2015 2015 HOH HOH . G 5 HOH A 16 2016 2016 HOH HOH . G 5 HOH A 17 2017 2017 HOH HOH . G 5 HOH A 18 2018 2018 HOH HOH . G 5 HOH A 19 2019 2019 HOH HOH . G 5 HOH A 20 2020 2020 HOH HOH . G 5 HOH A 21 2021 2021 HOH HOH . G 5 HOH A 22 2022 2022 HOH HOH . G 5 HOH A 23 2023 2023 HOH HOH . G 5 HOH A 24 2024 2024 HOH HOH . G 5 HOH A 25 2025 2025 HOH HOH . G 5 HOH A 26 2026 2026 HOH HOH . G 5 HOH A 27 2027 2027 HOH HOH . G 5 HOH A 28 2028 2028 HOH HOH . G 5 HOH A 29 2029 2029 HOH HOH . G 5 HOH A 30 2030 2030 HOH HOH . G 5 HOH A 31 2031 2031 HOH HOH . G 5 HOH A 32 2032 2032 HOH HOH . G 5 HOH A 33 2033 2033 HOH HOH . G 5 HOH A 34 2034 2034 HOH HOH . G 5 HOH A 35 2035 2035 HOH HOH . G 5 HOH A 36 2036 2036 HOH HOH . G 5 HOH A 37 2037 2037 HOH HOH . G 5 HOH A 38 2038 2038 HOH HOH . G 5 HOH A 39 2039 2039 HOH HOH . G 5 HOH A 40 2040 2040 HOH HOH . G 5 HOH A 41 2041 2041 HOH HOH . G 5 HOH A 42 2042 2042 HOH HOH . G 5 HOH A 43 2043 2043 HOH HOH . G 5 HOH A 44 2044 2044 HOH HOH . G 5 HOH A 45 2045 2045 HOH HOH . G 5 HOH A 46 2046 2046 HOH HOH . G 5 HOH A 47 2047 2047 HOH HOH . G 5 HOH A 48 2048 2048 HOH HOH . G 5 HOH A 49 2049 2049 HOH HOH . G 5 HOH A 50 2050 2050 HOH HOH . G 5 HOH A 51 2051 2051 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A9T . . . B 2 11.469 -46.54 2.853 1 54.02 ? C1 A9T 1514 A 1 HETATM 2 N N1 A9T . . . B 2 10.32 -46.16 2.306 1 56.59 ? N1 A9T 1514 A 1 HETATM 3 O O1 A9T . . . B 2 6.175 -50.44 12.223 1 74.26 ? O1 A9T 1514 A 1 HETATM 4 C C2 A9T . . . B 2 11.345 -47.185 4.241 1 53.14 ? C2 A9T 1514 A 1 HETATM 5 C C3 A9T . . . B 2 10.092 -47.317 4.837 1 55.81 ? C3 A9T 1514 A 1 HETATM 6 N N3 A9T . . . B 2 8.925 -48.166 6.874 1 59.85 ? N3 A9T 1514 A 1 HETATM 7 C C4 A9T . . . B 2 9.971 -47.902 6.095 1 57.59 ? C4 A9T 1514 A 1 HETATM 8 N N4 A9T . . . B 2 10.693 -48.855 7.923 1 59.5 ? N4 A9T 1514 A 1 HETATM 9 C C5 A9T . . . B 2 9.365 -48.725 8.005 1 61.96 ? C5 A9T 1514 A 1 HETATM 10 C C6 A9T . . . B 2 11.101 -48.351 6.76 1 57.11 ? C6 A9T 1514 A 1 HETATM 11 C C7 A9T . . . B 2 12.356 -48.221 6.168 1 54.32 ? C7 A9T 1514 A 1 HETATM 12 C C8 A9T . . . B 2 12.479 -47.635 4.912 1 51.83 ? C8 A9T 1514 A 1 HETATM 13 C C9 A9T . . . B 2 8.561 -49.147 9.069 1 63.24 ? C9 A9T 1514 A 1 HETATM 14 C C10 A9T . . . B 2 9.135 -49.649 10.235 1 62.43 ? C10 A9T 1514 A 1 HETATM 15 C C11 A9T . . . B 2 8.324 -50.06 11.289 1 64.03 ? C11 A9T 1514 A 1 HETATM 16 C C12 A9T . . . B 2 6.937 -49.987 11.184 1 68.31 ? C12 A9T 1514 A 1 HETATM 17 C C13 A9T . . . B 2 6.362 -49.538 9.999 1 66.06 ? C13 A9T 1514 A 1 HETATM 18 C C14 A9T . . . B 2 7.173 -49.104 8.953 1 63.74 ? C14 A9T 1514 A 1 HETATM 19 C C20 A9T . . . B 2 4.261 -52.87 14.874 1 92.29 ? C20 A9T 1514 A 1 HETATM 20 C C19 A9T . . . B 2 4.665 -52.213 13.555 1 90.75 ? C19 A9T 1514 A 1 HETATM 21 C C18 A9T . . . B 2 4.382 -50.727 13.585 1 85.83 ? C18 A9T 1514 A 1 HETATM 22 C C17 A9T . . . B 2 5.006 -50.091 14.825 1 86.17 ? C17 A9T 1514 A 1 HETATM 23 C C16 A9T . . . B 2 4.58 -50.844 16.089 1 88.92 ? C16 A9T 1514 A 1 HETATM 24 N NBG A9T . . . B 2 5.039 -52.252 15.976 1 92.85 ? NBG A9T 1514 A 1 HETATM 25 C CAS A9T . . . B 2 4.774 -50.028 12.276 1 80.91 ? CAS A9T 1514 A 1 HETATM 26 O OAB A9T . . . B 2 12.563 -46.381 2.314 1 54.18 ? OAB A9T 1514 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #