data_4A9U # _model_server_result.job_id 2_aE8npLj2xiolLO8rHGuw _model_server_result.datetime_utc '2024-12-21 16:25:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4a9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1516}' # _entry.id 4A9U # _exptl.entry_id 4A9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 440.537 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{4-[(1-BENZYLPIPERIDIN-4-YL)METHOXY]PHENYL}-1H-BENZIMIDAZOLE-6-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4A9U _cell.length_a 91.07 _cell.length_b 91.07 _cell.length_c 93.41 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 62.273333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H28 N4 O2' _chem_comp.formula_weight 440.537 _chem_comp.id A9U _chem_comp.mon_nstd_flag . _chem_comp.name 2-{4-[(1-BENZYLPIPERIDIN-4-YL)METHOXY]PHENYL}-1H-BENZIMIDAZOLE-6-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 A9U sing 1 n n C1 C2 A9U sing 2 n n C1 OAB A9U doub 3 n n O1 C12 A9U sing 4 n n O1 CAS A9U sing 5 n n C2 C3 A9U sing 6 n y C2 C8 A9U doub 7 n y C3 C4 A9U doub 8 n y N3 C4 A9U sing 9 n y N3 C5 A9U sing 10 n y C4 C6 A9U sing 11 n y N4 C5 A9U doub 12 n y N4 C6 A9U sing 13 n y C5 C9 A9U sing 14 n n C6 C7 A9U doub 15 n y C7 C8 A9U sing 16 n y C9 C10 A9U sing 17 n y C9 C14 A9U doub 18 n y C10 C11 A9U doub 19 n y C11 C12 A9U sing 20 n y C12 C13 A9U doub 21 n y C13 C14 A9U sing 22 n y C16 C17 A9U sing 23 n n C16 NBH A9U sing 24 n n C17 C18 A9U sing 25 n n C18 C19 A9U sing 26 n n C18 CAS A9U sing 27 n n C19 C20 A9U sing 28 n n C20 NBH A9U sing 29 n n C21 NBH A9U sing 30 n n C22 C23 A9U doub 31 n y C22 C21 A9U sing 32 n n C22 C27 A9U sing 33 n y C23 C24 A9U sing 34 n y C23 H23 A9U sing 35 n n C24 C25 A9U doub 36 n y C24 H24 A9U sing 37 n n C25 C26 A9U sing 38 n y C25 H25 A9U sing 39 n n C26 C27 A9U doub 40 n y C26 H26 A9U sing 41 n n C21 H21 A9U sing 42 n n C21 H22 A9U sing 43 n n C27 H27 A9U sing 44 n n N1 H11N A9U sing 45 n n N1 H12N A9U sing 46 n n CAS HAS1 A9U sing 47 n n CAS HAS2 A9U sing 48 n n C3 H3 A9U sing 49 n n C8 H8 A9U sing 50 n n N3 HA A9U sing 51 n n C7 H7 A9U sing 52 n n C10 H10 A9U sing 53 n n C14 H14 A9U sing 54 n n C11 H11 A9U sing 55 n n C13 H13 A9U sing 56 n n C16 H161 A9U sing 57 n n C16 H162 A9U sing 58 n n C17 H171 A9U sing 59 n n C17 H172 A9U sing 60 n n C18 H18 A9U sing 61 n n C19 H191 A9U sing 62 n n C19 H192 A9U sing 63 n n C20 H201 A9U sing 64 n n C20 H202 A9U sing 65 n n # _atom_sites.entry_id 4A9U _atom_sites.fract_transf_matrix[1][1] 0.010981 _atom_sites.fract_transf_matrix[1][2] 0.00634 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 1514 1514 NO3 NO3 . C 3 EDO A 1 1515 1515 EDO EDO . D 4 A9U A 1 1516 1516 A9U A9U . E 3 EDO A 1 1517 1517 EDO EDO . F 3 EDO A 1 1518 1518 EDO EDO . G 3 EDO A 1 1519 1519 EDO EDO . H 3 EDO A 1 1520 1520 EDO EDO . I 3 EDO A 1 1521 1521 EDO EDO . J 3 EDO A 1 1522 1522 EDO EDO . K 3 EDO A 1 1523 1523 EDO EDO . L 3 EDO A 1 1524 1524 EDO EDO . M 5 CL A 1 1525 1525 CL CL . N 6 HOH A 1 2001 2001 HOH HOH . N 6 HOH A 2 2002 2002 HOH HOH . N 6 HOH A 3 2003 2003 HOH HOH . N 6 HOH A 4 2004 2004 HOH HOH . N 6 HOH A 5 2005 2005 HOH HOH . N 6 HOH A 6 2006 2006 HOH HOH . N 6 HOH A 7 2007 2007 HOH HOH . N 6 HOH A 8 2008 2008 HOH HOH . N 6 HOH A 9 2009 2009 HOH HOH . N 6 HOH A 10 2010 2010 HOH HOH . N 6 HOH A 11 2011 2011 HOH HOH . N 6 HOH A 12 2012 2012 HOH HOH . N 6 HOH A 13 2013 2013 HOH HOH . N 6 HOH A 14 2014 2014 HOH HOH . N 6 HOH A 15 2015 2015 HOH HOH . N 6 HOH A 16 2016 2016 HOH HOH . N 6 HOH A 17 2017 2017 HOH HOH . N 6 HOH A 18 2018 2018 HOH HOH . N 6 HOH A 19 2019 2019 HOH HOH . N 6 HOH A 20 2020 2020 HOH HOH . N 6 HOH A 21 2021 2021 HOH HOH . N 6 HOH A 22 2022 2022 HOH HOH . N 6 HOH A 23 2023 2023 HOH HOH . N 6 HOH A 24 2024 2024 HOH HOH . N 6 HOH A 25 2025 2025 HOH HOH . N 6 HOH A 26 2026 2026 HOH HOH . N 6 HOH A 27 2027 2027 HOH HOH . N 6 HOH A 28 2028 2028 HOH HOH . N 6 HOH A 29 2029 2029 HOH HOH . N 6 HOH A 30 2030 2030 HOH HOH . N 6 HOH A 31 2031 2031 HOH HOH . N 6 HOH A 32 2032 2032 HOH HOH . N 6 HOH A 33 2033 2033 HOH HOH . N 6 HOH A 34 2034 2034 HOH HOH . N 6 HOH A 35 2035 2035 HOH HOH . N 6 HOH A 36 2036 2036 HOH HOH . N 6 HOH A 37 2037 2037 HOH HOH . N 6 HOH A 38 2038 2038 HOH HOH . N 6 HOH A 39 2039 2039 HOH HOH . N 6 HOH A 40 2040 2040 HOH HOH . N 6 HOH A 41 2041 2041 HOH HOH . N 6 HOH A 42 2042 2042 HOH HOH . N 6 HOH A 43 2043 2043 HOH HOH . N 6 HOH A 44 2044 2044 HOH HOH . N 6 HOH A 45 2045 2045 HOH HOH . N 6 HOH A 46 2046 2046 HOH HOH . N 6 HOH A 47 2047 2047 HOH HOH . N 6 HOH A 48 2048 2048 HOH HOH . N 6 HOH A 49 2049 2049 HOH HOH . N 6 HOH A 50 2050 2050 HOH HOH . N 6 HOH A 51 2051 2051 HOH HOH . N 6 HOH A 52 2052 2052 HOH HOH . N 6 HOH A 53 2053 2053 HOH HOH . N 6 HOH A 54 2054 2054 HOH HOH . N 6 HOH A 55 2055 2055 HOH HOH . N 6 HOH A 56 2056 2056 HOH HOH . N 6 HOH A 57 2057 2057 HOH HOH . N 6 HOH A 58 2058 2058 HOH HOH . N 6 HOH A 59 2059 2059 HOH HOH . N 6 HOH A 60 2060 2060 HOH HOH . N 6 HOH A 61 2061 2061 HOH HOH . N 6 HOH A 62 2062 2062 HOH HOH . N 6 HOH A 63 2063 2063 HOH HOH . N 6 HOH A 64 2064 2064 HOH HOH . N 6 HOH A 65 2065 2065 HOH HOH . N 6 HOH A 66 2066 2066 HOH HOH . N 6 HOH A 67 2067 2067 HOH HOH . N 6 HOH A 68 2068 2068 HOH HOH . N 6 HOH A 69 2069 2069 HOH HOH . N 6 HOH A 70 2070 2070 HOH HOH . N 6 HOH A 71 2071 2071 HOH HOH . N 6 HOH A 72 2072 2072 HOH HOH . N 6 HOH A 73 2073 2073 HOH HOH . N 6 HOH A 74 2074 2074 HOH HOH . N 6 HOH A 75 2075 2075 HOH HOH . N 6 HOH A 76 2076 2076 HOH HOH . N 6 HOH A 77 2077 2077 HOH HOH . N 6 HOH A 78 2078 2078 HOH HOH . N 6 HOH A 79 2079 2079 HOH HOH . N 6 HOH A 80 2080 2080 HOH HOH . N 6 HOH A 81 2081 2081 HOH HOH . N 6 HOH A 82 2082 2082 HOH HOH . N 6 HOH A 83 2083 2083 HOH HOH . N 6 HOH A 84 2084 2084 HOH HOH . N 6 HOH A 85 2085 2085 HOH HOH . N 6 HOH A 86 2086 2086 HOH HOH . N 6 HOH A 87 2087 2087 HOH HOH . N 6 HOH A 88 2088 2088 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A9U . . . D 4 34.516 -33.425 12.67 1 41.89 ? C1 A9U 1516 A 1 HETATM 2 N N1 A9U . . . D 4 34.987 -32.432 13.613 1 39.66 ? N1 A9U 1516 A 1 HETATM 3 O O1 A9U . . . D 4 40.897 -30.563 3.078 1 64.54 ? O1 A9U 1516 A 1 HETATM 4 C C2 A9U . . . D 4 35.211 -33.587 11.32 1 38.54 ? C2 A9U 1516 A 1 HETATM 5 C C3 A9U . . . D 4 35.841 -32.569 10.773 1 38.82 ? C3 A9U 1516 A 1 HETATM 6 N N3 A9U . . . D 4 37.265 -31.855 8.61 1 43.2 ? N3 A9U 1516 A 1 HETATM 7 C C4 A9U . . . D 4 36.533 -32.738 9.418 1 40.44 ? C4 A9U 1516 A 1 HETATM 8 N N4 A9U . . . D 4 37.239 -33.765 7.524 1 44.78 ? N4 A9U 1516 A 1 HETATM 9 C C5 A9U . . . D 4 37.664 -32.558 7.426 1 45.91 ? C5 A9U 1516 A 1 HETATM 10 C C6 A9U . . . D 4 36.491 -33.896 8.807 1 40.6 ? C6 A9U 1516 A 1 HETATM 11 C C7 A9U . . . D 4 35.76 -35.077 9.444 1 38.8 ? C7 A9U 1516 A 1 HETATM 12 C C8 A9U . . . D 4 35.166 -34.933 10.61 1 36.46 ? C8 A9U 1516 A 1 HETATM 13 C C9 A9U . . . D 4 38.503 -32.011 6.273 1 48.65 ? C9 A9U 1516 A 1 HETATM 14 C C10 A9U . . . D 4 38.597 -32.799 4.967 1 49.09 ? C10 A9U 1516 A 1 HETATM 15 C C11 A9U . . . D 4 39.332 -32.344 3.972 1 52.15 ? C11 A9U 1516 A 1 HETATM 16 C C12 A9U . . . D 4 40.094 -31.029 4.125 1 57.41 ? C12 A9U 1516 A 1 HETATM 17 C C13 A9U . . . D 4 40.018 -30.353 5.254 1 54.62 ? C13 A9U 1516 A 1 HETATM 18 C C14 A9U . . . D 4 39.166 -30.88 6.409 1 50.17 ? C14 A9U 1516 A 1 HETATM 19 C C20 A9U . . . D 4 43.831 -29.71 0.642 1 80.18 ? C20 A9U 1516 A 1 HETATM 20 C C19 A9U . . . D 4 42.739 -29.904 1.697 1 78.4 ? C19 A9U 1516 A 1 HETATM 21 C C18 A9U . . . D 4 41.602 -29.08 1.456 1 75.92 ? C18 A9U 1516 A 1 HETATM 22 C C17 A9U . . . D 4 41.153 -29.207 0.114 1 76.92 ? C17 A9U 1516 A 1 HETATM 23 C C16 A9U . . . D 4 42.29 -29.009 -0.885 1 79.14 ? C16 A9U 1516 A 1 HETATM 24 N NBH A9U . . . D 4 43.302 -29.911 -0.621 1 80.48 ? NBH A9U 1516 A 1 HETATM 25 C CAS A9U . . . D 4 40.548 -29.409 2.368 1 71.47 ? CAS A9U 1516 A 1 HETATM 26 O OAB A9U . . . D 4 33.588 -34.109 12.946 1 47.44 ? OAB A9U 1516 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 26 #