data_4AAR # _model_server_result.job_id '_mO9KZWzWSZtmHKPgz1pyg' _model_server_result.datetime_utc '2024-10-18 11:22:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4aar # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":1525}' # _entry.id 4AAR # _exptl.entry_id 4AAR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AAR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AAR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 O N N ? 2 R N N ? 2 V N N ? 2 X N N ? 2 CA N N ? 2 FA N N ? 2 IA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 87 A ASP 87 1_555 Q MG MG . A MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc2 A OD2 ASP 87 A ASP 87 1_555 Q MG MG . A MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc3 O O3G ATP . A ATP 1525 1_555 Q MG MG . A MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? metalc ? metalc4 O O1B ATP . A ATP 1525 1_555 Q MG MG . A MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? metalc ? metalc5 O O2A ATP . A ATP 1525 1_555 Q MG MG . A MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? metalc ? metalc6 B OD1 ASP 87 B ASP 87 1_555 T MG MG . B MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? metalc ? metalc7 B OD2 ASP 87 B ASP 87 1_555 T MG MG . B MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc8 R O2A ATP . B ATP 1525 1_555 T MG MG . B MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc9 R O3G ATP . B ATP 1525 1_555 T MG MG . B MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc10 R O1B ATP . B ATP 1525 1_555 T MG MG . B MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc11 C OD2 ASP 87 C ASP 87 1_555 U MG MG . C MG 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc12 C OD1 ASP 87 C ASP 87 1_555 U MG MG . C MG 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? metalc ? metalc13 U MG MG . C MG 1525 1_555 V O2A ATP . C ATP 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? metalc ? metalc14 U MG MG . C MG 1525 1_555 V O1B ATP . C ATP 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? metalc ? metalc15 U MG MG . C MG 1525 1_555 V O3G ATP . C ATP 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc16 D OD1 ASP 87 D ASP 87 1_555 Z MG MG . D MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc17 D OD2 ASP 87 D ASP 87 1_555 Z MG MG . D MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc18 X O3G ATP . D ATP 1525 1_555 Z MG MG . D MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc19 X O2A ATP . D ATP 1525 1_555 Z MG MG . D MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc20 X O1B ATP . D ATP 1525 1_555 Z MG MG . D MG 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? metalc ? metalc21 E OD2 ASP 87 E ASP 87 1_555 AA MG MG . E MG 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc22 E OD1 ASP 87 E ASP 87 1_555 AA MG MG . E MG 1525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? metalc ? metalc23 AA MG MG . E MG 1525 1_555 CA O2A ATP . E ATP 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? metalc ? metalc24 AA MG MG . E MG 1525 1_555 CA O1B ATP . E ATP 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? metalc ? metalc25 AA MG MG . E MG 1525 1_555 CA O3G ATP . E ATP 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc26 F OD1 ASP 87 F ASP 87 1_555 EA MG MG . F MG 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? metalc ? metalc27 F OD2 ASP 87 F ASP 87 1_555 EA MG MG . F MG 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc28 EA MG MG . F MG 1526 1_555 FA O2A ATP . F ATP 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc29 EA MG MG . F MG 1526 1_555 FA O1B ATP . F ATP 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc30 EA MG MG . F MG 1526 1_555 FA O3G ATP . F ATP 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc31 G OD1 ASP 87 G ASP 87 1_555 HA MG MG . G MG 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc32 G OD2 ASP 87 G ASP 87 1_555 HA MG MG . G MG 1526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc33 HA MG MG . G MG 1526 1_555 IA O2A ATP . G ATP 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc34 HA MG MG . G MG 1526 1_555 IA O1B ATP . G ATP 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? metalc ? metalc35 HA MG MG . G MG 1526 1_555 IA O3G ATP . G ATP 1527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4AAR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 2 ATP A 1 1525 1525 ATP ATP . P 3 PO4 A 1 1526 1526 PO4 PO4 . Q 4 MG A 1 1527 1527 MG MG . R 2 ATP B 1 1525 1525 ATP ATP . S 3 PO4 B 1 1526 1526 PO4 PO4 . T 4 MG B 1 1527 1527 MG MG . U 4 MG C 1 1525 1525 MG MG . V 2 ATP C 1 1526 1526 ATP ATP . W 3 PO4 C 1 1527 1527 PO4 PO4 . X 2 ATP D 1 1525 1525 ATP ATP . Y 3 PO4 D 1 1526 1526 PO4 PO4 . Z 4 MG D 1 1527 1527 MG MG . AA 4 MG E 1 1525 1525 MG MG . BA 3 PO4 E 1 1526 1526 PO4 PO4 . CA 2 ATP E 1 1527 1527 ATP ATP . DA 3 PO4 F 1 1525 1525 PO4 PO4 . EA 4 MG F 1 1526 1526 MG MG . FA 2 ATP F 1 1527 1527 ATP ATP . GA 3 PO4 G 1 1525 1525 PO4 PO4 . HA 4 MG G 1 1526 1526 MG MG . IA 2 ATP G 1 1527 1527 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . X 2 37.694 -30.328 23.049 1 0 ? PG ATP 1525 D 1 HETATM 2 O O1G ATP . . . X 2 37.243 -28.991 22.538 1 0 ? O1G ATP 1525 D 1 HETATM 3 O O2G ATP . . . X 2 36.644 -31.188 23.666 1 0 ? O2G ATP 1525 D 1 HETATM 4 O O3G ATP . . . X 2 39.047 -30.323 23.728 1 0 ? O3G ATP 1525 D 1 HETATM 5 P PB ATP . . . X 2 38.694 -32.453 21.674 1 0 ? PB ATP 1525 D 1 HETATM 6 O O1B ATP . . . X 2 39.236 -32.825 23.058 1 0 ? O1B ATP 1525 D 1 HETATM 7 O O2B ATP . . . X 2 37.746 -33.477 21.072 1 0 ? O2B ATP 1525 D 1 HETATM 8 O O3B ATP . . . X 2 37.951 -31.021 21.649 1 0 ? O3B ATP 1525 D 1 HETATM 9 P PA ATP . . . X 2 40.898 -31.282 21.089 1 0 ? PA ATP 1525 D 1 HETATM 10 O O1A ATP . . . X 2 40.57 -30.003 20.431 1 0 ? O1A ATP 1525 D 1 HETATM 11 O O2A ATP . . . X 2 41.182 -31.267 22.563 1 0 ? O2A ATP 1525 D 1 HETATM 12 O O3A ATP . . . X 2 39.885 -32.304 20.648 1 0 ? O3A ATP 1525 D 1 HETATM 13 O O5' ATP . . . X 2 42.165 -31.84 20.373 1 0 ? O5' ATP 1525 D 1 HETATM 14 C C5' ATP . . . X 2 42.665 -33.151 20.731 1 0 ? C5' ATP 1525 D 1 HETATM 15 C C4' ATP . . . X 2 42.722 -34.077 19.507 1 0 ? C4' ATP 1525 D 1 HETATM 16 O O4' ATP . . . X 2 43.833 -33.692 18.623 1 0 ? O4' ATP 1525 D 1 HETATM 17 C C3' ATP . . . X 2 43.068 -35.509 19.974 1 0 ? C3' ATP 1525 D 1 HETATM 18 O O3' ATP . . . X 2 42.561 -36.591 19.175 1 0 ? O3' ATP 1525 D 1 HETATM 19 C C2' ATP . . . X 2 44.585 -35.423 19.976 1 0 ? C2' ATP 1525 D 1 HETATM 20 O O2' ATP . . . X 2 45.25 -36.667 19.997 1 0 ? O2' ATP 1525 D 1 HETATM 21 C C1' ATP . . . X 2 44.796 -34.722 18.69 1 0 ? C1' ATP 1525 D 1 HETATM 22 N N9 ATP . . . X 2 46.142 -34.227 18.602 1 0 ? N9 ATP 1525 D 1 HETATM 23 C C8 ATP . . . X 2 46.793 -33.362 19.445 1 0 ? C8 ATP 1525 D 1 HETATM 24 N N7 ATP . . . X 2 48.035 -33.128 19.087 1 0 ? N7 ATP 1525 D 1 HETATM 25 C C5 ATP . . . X 2 48.195 -33.93 17.961 1 0 ? C5 ATP 1525 D 1 HETATM 26 C C6 ATP . . . X 2 49.275 -34.137 17.085 1 0 ? C6 ATP 1525 D 1 HETATM 27 N N6 ATP . . . X 2 50.388 -33.389 17.065 1 0 ? N6 ATP 1525 D 1 HETATM 28 N N1 ATP . . . X 2 49.162 -35.119 16.167 1 0 ? N1 ATP 1525 D 1 HETATM 29 C C2 ATP . . . X 2 48.015 -35.804 16.094 1 0 ? C2 ATP 1525 D 1 HETATM 30 N N3 ATP . . . X 2 46.867 -35.534 16.7 1 0 ? N3 ATP 1525 D 1 HETATM 31 C C4 ATP . . . X 2 47.046 -34.634 17.68 1 0 ? C4 ATP 1525 D 1 HETATM 32 H "H5'1" ATP . . . X 2 43.679 -33.03 21.168 1 0 ? "H5'1" ATP 1525 D 1 HETATM 33 H H4' ATP . . . X 2 41.754 -34.086 18.96 1 0 ? H4' ATP 1525 D 1 HETATM 34 H H3' ATP . . . X 2 42.702 -35.641 21.018 1 0 ? H3' ATP 1525 D 1 HETATM 35 H HO3' ATP . . . X 2 42.773 -37.413 19.679 1 0 ? HO3' ATP 1525 D 1 HETATM 36 H H2' ATP . . . X 2 44.911 -34.817 20.851 1 0 ? H2' ATP 1525 D 1 HETATM 37 H HO2' ATP . . . X 2 44.888 -37.108 20.81 1 0 ? HO2' ATP 1525 D 1 HETATM 38 H H1' ATP . . . X 2 44.556 -35.418 17.852 1 0 ? H1' ATP 1525 D 1 HETATM 39 H H8 ATP . . . X 2 46.275 -32.9 20.29 1 0 ? H8 ATP 1525 D 1 HETATM 40 H H2 ATP . . . X 2 47.965 -36.575 15.315 1 0 ? H2 ATP 1525 D 1 HETATM 41 H H5' ATP . . . X 2 42.052 -33.662 21.517 1 0 ? H5' ATP 1525 D 1 HETATM 42 H H62 ATP . . . X 2 50.574 -32.799 17.846 1 0 ? H62 ATP 1525 D 1 HETATM 43 H H61 ATP . . . X 2 51.171 -33.837 16.614 1 0 ? H61 ATP 1525 D 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 63 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #