data_4AAX
#
_model_server_result.job_id            lNGQbic5vuC7eG6IQmfDlA 
_model_server_result.datetime_utc      '2024-11-25 01:50:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4aax 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":4641}' 
#
_entry.id    4AAX 
#
_exptl.entry_id    4AAX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-galactopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.51 
_cell.angle_gamma         90 
_cell.entry_id            4AAX 
_cell.length_a            65.815 
_cell.length_b            37.268 
_cell.length_c            57.41 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AAX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PHE 49 A PHE 1381 1_555 B CA CA . A CA 2494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc2 A OD1 ASP 52 A ASP 1384 1_555 B CA CA . A CA 2494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc3 A O LYS 54 A LYS 1386 1_555 B CA CA . A CA 2494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc4 A O THR 57 A THR 1389 1_555 B CA CA . A CA 2494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc5 A OG1 THR 57 A THR 1389 1_555 B CA CA . A CA 2494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc6 A OE2 GLU 146 A GLU 1478 1_555 C NA NA . A NA 2495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? 
metalc ? metalc7 A O ALA 155 A ALA 1487 1_555 B CA CA . A CA 2494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc8 A OE2 GLU 156 A GLU 1488 1_555 B CA CA . A CA 2494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-galactopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-galactosamine;2-acetamido-2-deoxy-beta-D-galactose;2-acetamido-2-deoxy-D-galactose;2-acetamido-2-deoxy-galactose;N-ACETYL-D-GALACTOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NGA sing 224 n n 
C1 O1 NGA sing 225 n n 
C1 O5 NGA sing 226 n n 
C1 H1 NGA sing 227 n n 
C2 C3 NGA sing 228 n n 
C2 N2 NGA sing 229 n n 
C2 H2 NGA sing 230 n n 
C3 C4 NGA sing 231 n n 
C3 O3 NGA sing 232 n n 
C3 H3 NGA sing 233 n n 
C4 C5 NGA sing 234 n n 
C4 O4 NGA sing 235 n n 
C4 H4 NGA sing 236 n n 
C5 C6 NGA sing 237 n n 
C5 O5 NGA sing 238 n n 
C5 H5 NGA sing 239 n n 
C6 O6 NGA sing 240 n n 
C6 H61 NGA sing 241 n n 
C6 H62 NGA sing 242 n n 
C7 C8 NGA sing 243 n n 
C7 N2 NGA sing 244 n n 
C7 O7 NGA doub 245 n n 
C8 H81 NGA sing 246 n n 
C8 H82 NGA sing 247 n n 
C8 H83 NGA sing 248 n n 
N2 HN2 NGA sing 249 n n 
O1 HO1 NGA sing 250 n n 
O3 HO3 NGA sing 251 n n 
O4 HO4 NGA sing 252 n n 
O6 HO6 NGA sing 253 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NGA DGalpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NGA N-acetyl-b-D-galactopyranosamine 'COMMON NAME' GMML 1 
NGA b-D-GalpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NGA GalNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4AAX 
_atom_sites.fract_transf_matrix[1][1]    0.015194 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003651 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026833 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017914 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 2494 2494 CA CA . 
C 3 NA A 1 2495 2495 NA NA . 
D 4 NGA A 1 4641 4641 NGA NGA . 
E 5 HOH A 1 2001 2001 HOH HOH . 
E 5 HOH A 2 2002 2002 HOH HOH . 
E 5 HOH A 3 2003 2003 HOH HOH . 
E 5 HOH A 4 2004 2004 HOH HOH . 
E 5 HOH A 5 2005 2005 HOH HOH . 
E 5 HOH A 6 2006 2006 HOH HOH . 
E 5 HOH A 7 2007 2007 HOH HOH . 
E 5 HOH A 8 2008 2008 HOH HOH . 
E 5 HOH A 9 2009 2009 HOH HOH . 
E 5 HOH A 10 2010 2010 HOH HOH . 
E 5 HOH A 11 2011 2011 HOH HOH . 
E 5 HOH A 12 2012 2012 HOH HOH . 
E 5 HOH A 13 2013 2013 HOH HOH . 
E 5 HOH A 14 2014 2014 HOH HOH . 
E 5 HOH A 15 2015 2015 HOH HOH . 
E 5 HOH A 16 2016 2016 HOH HOH . 
E 5 HOH A 17 2017 2017 HOH HOH . 
E 5 HOH A 18 2018 2018 HOH HOH . 
E 5 HOH A 19 2019 2019 HOH HOH . 
E 5 HOH A 20 2020 2020 HOH HOH . 
E 5 HOH A 21 2021 2021 HOH HOH . 
E 5 HOH A 22 2022 2022 HOH HOH . 
E 5 HOH A 23 2023 2023 HOH HOH . 
E 5 HOH A 24 2024 2024 HOH HOH . 
E 5 HOH A 25 2025 2025 HOH HOH . 
E 5 HOH A 26 2026 2026 HOH HOH . 
E 5 HOH A 27 2027 2027 HOH HOH . 
E 5 HOH A 28 2028 2028 HOH HOH . 
E 5 HOH A 29 2029 2029 HOH HOH . 
E 5 HOH A 30 2030 2030 HOH HOH . 
E 5 HOH A 31 2031 2031 HOH HOH . 
E 5 HOH A 32 2032 2032 HOH HOH . 
E 5 HOH A 33 2033 2033 HOH HOH . 
E 5 HOH A 34 2034 2034 HOH HOH . 
E 5 HOH A 35 2035 2035 HOH HOH . 
E 5 HOH A 36 2036 2036 HOH HOH . 
E 5 HOH A 37 2037 2037 HOH HOH . 
E 5 HOH A 38 2038 2038 HOH HOH . 
E 5 HOH A 39 2039 2039 HOH HOH . 
E 5 HOH A 40 2040 2040 HOH HOH . 
E 5 HOH A 41 2041 2041 HOH HOH . 
E 5 HOH A 42 2042 2042 HOH HOH . 
E 5 HOH A 43 2043 2043 HOH HOH . 
E 5 HOH A 44 2044 2044 HOH HOH . 
E 5 HOH A 45 2045 2045 HOH HOH . 
E 5 HOH A 46 2046 2046 HOH HOH . 
E 5 HOH A 47 2047 2047 HOH HOH . 
E 5 HOH A 48 2048 2048 HOH HOH . 
E 5 HOH A 49 2049 2049 HOH HOH . 
E 5 HOH A 50 2050 2050 HOH HOH . 
E 5 HOH A 51 2051 2051 HOH HOH . 
E 5 HOH A 52 2052 2052 HOH HOH . 
E 5 HOH A 53 2053 2053 HOH HOH . 
E 5 HOH A 54 2054 2054 HOH HOH . 
E 5 HOH A 55 2055 2055 HOH HOH . 
E 5 HOH A 56 2056 2056 HOH HOH . 
E 5 HOH A 57 2057 2057 HOH HOH . 
E 5 HOH A 58 2058 2058 HOH HOH . 
E 5 HOH A 59 2059 2059 HOH HOH . 
E 5 HOH A 60 2060 2060 HOH HOH . 
E 5 HOH A 61 2061 2061 HOH HOH . 
E 5 HOH A 62 2062 2062 HOH HOH . 
E 5 HOH A 63 2063 2063 HOH HOH . 
E 5 HOH A 64 2064 2064 HOH HOH . 
E 5 HOH A 65 2065 2065 HOH HOH . 
E 5 HOH A 66 2066 2066 HOH HOH . 
E 5 HOH A 67 2067 2067 HOH HOH . 
E 5 HOH A 68 2068 2068 HOH HOH . 
E 5 HOH A 69 2069 2069 HOH HOH . 
E 5 HOH A 70 2070 2070 HOH HOH . 
E 5 HOH A 71 2071 2071 HOH HOH . 
E 5 HOH A 72 2072 2072 HOH HOH . 
E 5 HOH A 73 2073 2073 HOH HOH . 
E 5 HOH A 74 2074 2074 HOH HOH . 
E 5 HOH A 75 2075 2075 HOH HOH . 
E 5 HOH A 76 2076 2076 HOH HOH . 
E 5 HOH A 77 2077 2077 HOH HOH . 
E 5 HOH A 78 2078 2078 HOH HOH . 
E 5 HOH A 79 2079 2079 HOH HOH . 
E 5 HOH A 80 2080 2080 HOH HOH . 
E 5 HOH A 81 2081 2081 HOH HOH . 
E 5 HOH A 82 2082 2082 HOH HOH . 
E 5 HOH A 83 2083 2083 HOH HOH . 
E 5 HOH A 84 2084 2084 HOH HOH . 
E 5 HOH A 85 2085 2085 HOH HOH . 
E 5 HOH A 86 2086 2086 HOH HOH . 
E 5 HOH A 87 2087 2087 HOH HOH . 
E 5 HOH A 88 2088 2088 HOH HOH . 
E 5 HOH A 89 2089 2089 HOH HOH . 
E 5 HOH A 90 2090 2090 HOH HOH . 
E 5 HOH A 91 2091 2091 HOH HOH . 
E 5 HOH A 92 2092 2092 HOH HOH . 
E 5 HOH A 93 2093 2093 HOH HOH . 
E 5 HOH A 94 2094 2094 HOH HOH . 
E 5 HOH A 95 2095 2095 HOH HOH . 
E 5 HOH A 96 2096 2096 HOH HOH . 
E 5 HOH A 97 2097 2097 HOH HOH . 
E 5 HOH A 98 2098 2098 HOH HOH . 
E 5 HOH A 99 2099 2099 HOH HOH . 
E 5 HOH A 100 2100 2100 HOH HOH . 
E 5 HOH A 101 2101 2101 HOH HOH . 
E 5 HOH A 102 2102 2102 HOH HOH . 
E 5 HOH A 103 2103 2103 HOH HOH . 
E 5 HOH A 104 2104 2104 HOH HOH . 
E 5 HOH A 105 2105 2105 HOH HOH . 
E 5 HOH A 106 2106 2106 HOH HOH . 
E 5 HOH A 107 2107 2107 HOH HOH . 
E 5 HOH A 108 2108 2108 HOH HOH . 
E 5 HOH A 109 2109 2109 HOH HOH . 
E 5 HOH A 110 2110 2110 HOH HOH . 
E 5 HOH A 111 2111 2111 HOH HOH . 
E 5 HOH A 112 2112 2112 HOH HOH . 
E 5 HOH A 113 2113 2113 HOH HOH . 
E 5 HOH A 114 2114 2114 HOH HOH . 
E 5 HOH A 115 2115 2115 HOH HOH . 
E 5 HOH A 116 2116 2116 HOH HOH . 
E 5 HOH A 117 2117 2117 HOH HOH . 
E 5 HOH A 118 2118 2118 HOH HOH . 
E 5 HOH A 119 2119 2119 HOH HOH . 
E 5 HOH A 120 2120 2120 HOH HOH . 
E 5 HOH A 121 2121 2121 HOH HOH . 
E 5 HOH A 122 2122 2122 HOH HOH . 
E 5 HOH A 123 2123 2123 HOH HOH . 
E 5 HOH A 124 2124 2124 HOH HOH . 
E 5 HOH A 125 2125 2125 HOH HOH . 
E 5 HOH A 126 2126 2126 HOH HOH . 
E 5 HOH A 127 2127 2127 HOH HOH . 
E 5 HOH A 128 2128 2128 HOH HOH . 
E 5 HOH A 129 2129 2129 HOH HOH . 
E 5 HOH A 130 2130 2130 HOH HOH . 
E 5 HOH A 131 2131 2131 HOH HOH . 
E 5 HOH A 132 2132 2132 HOH HOH . 
E 5 HOH A 133 2133 2133 HOH HOH . 
E 5 HOH A 134 2134 2134 HOH HOH . 
E 5 HOH A 135 2135 2135 HOH HOH . 
E 5 HOH A 136 2136 2136 HOH HOH . 
E 5 HOH A 137 2137 2137 HOH HOH . 
E 5 HOH A 138 2138 2138 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NGA . . . D 4 -27.314 -9.345 -23.358 1 28.64 ? C1 NGA 4641 A 1 
HETATM 2 C C2 NGA . . . D 4 -26.645 -8.026 -23.019 1 25.91 ? C2 NGA 4641 A 1 
HETATM 3 C C3 NGA . . . D 4 -25.153 -8.366 -22.935 1 26.77 ? C3 NGA 4641 A 1 
HETATM 4 C C4 NGA . . . D 4 -24.914 -9.4 -21.834 1 28.16 ? C4 NGA 4641 A 1 
HETATM 5 C C5 NGA . . . D 4 -25.827 -10.617 -22.054 1 27.12 ? C5 NGA 4641 A 1 
HETATM 6 C C6 NGA . . . D 4 -25.742 -11.634 -20.923 1 30.2 ? C6 NGA 4641 A 1 
HETATM 7 C C7 NGA . . . D 4 -27.9 -6.021 -23.767 1 29.64 ? C7 NGA 4641 A 1 
HETATM 8 C C8 NGA . . . D 4 -28.149 -5.044 -24.885 1 29.42 ? C8 NGA 4641 A 1 
HETATM 9 N N2 NGA . . . D 4 -26.946 -6.954 -23.972 1 26.67 ? N2 NGA 4641 A 1 
HETATM 10 O O1 NGA . . . D 4 -28.681 -9.127 -23.669 1 37.68 ? O1 NGA 4641 A 1 
HETATM 11 O O3 NGA . . . D 4 -24.378 -7.182 -22.723 1 23.56 ? O3 NGA 4641 A 1 
HETATM 12 O O4 NGA . . . D 4 -25.151 -8.79 -20.541 1 29.41 ? O4 NGA 4641 A 1 
HETATM 13 O O5 NGA . . . D 4 -27.182 -10.129 -22.177 1 31.08 ? O5 NGA 4641 A 1 
HETATM 14 O O6 NGA . . . D 4 -26.199 -12.946 -21.297 1 30.65 ? O6 NGA 4641 A 1 
HETATM 15 O O7 NGA . . . D 4 -28.553 -5.962 -22.727 1 30.27 ? O7 NGA 4641 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#