data_4AAY # _model_server_result.job_id 6xq3rauE3p2nwurAiRJRvw _model_server_result.datetime_utc '2024-11-14 17:02:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4aay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":2005}' # _entry.id 4AAY # _exptl.entry_id 4AAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.795 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE3-S4 CLUSTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AAY _cell.length_a 149.13 _cell.length_b 232.96 _cell.length_c 141.87 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,E,F,O,P,Q,R,S,T,U,V,W,X,Y,Z,HA,IA 1 1 A,B,I,J,K,L,M,N,GA 2 1 G,H,AA,BA,CA,DA,EA,FA,JA 2 2 G,H,AA,BA,CA,DA,EA,FA,JA 3 1 A,B,I,J,K,L,M,N,GA 3 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_546 x+1/2,-y-1/2,-z+1 1 0 0 0 -1 0 0 0 -1 74.565 -116.48 141.87 3 'crystal symmetry operation' 4_446 x-1/2,-y-1/2,-z+1 1 0 0 0 -1 0 0 0 -1 -74.565 -116.48 141.87 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 S N N ? 6 Y N N ? 6 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 24 A CYS 24 1_555 M FE1 F3S . A F3S 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 A SG CYS 27 A CYS 27 1_555 M FE4 F3S . A F3S 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A SG CYS 31 A CYS 31 1_555 M FE3 F3S . A F3S 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc4 I S13 MGD . A MGD 2001 1_555 L MO 4MO . A 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc5 I S12 MGD . A MGD 2001 1_555 L MO 4MO . A 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc6 J S13 MGD . A MGD 2002 1_555 L MO 4MO . A 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc7 J S12 MGD . A MGD 2002 1_555 L MO 4MO . A 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc8 K O O . A O 2003 1_555 L MO 4MO . A 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? metalc ? metalc9 B SG CYS 103 B CYS 103 1_555 N FE2 FES . B FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc10 B ND1 HIS 105 B HIS 105 1_555 N FE1 FES . B FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc11 B SG CYS 121 B CYS 121 1_555 N FE2 FES . B FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc12 B ND1 HIS 124 B HIS 124 1_555 N FE1 FES . B FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc13 C SG CYS 24 C CYS 24 1_555 S FE1 F3S . C F3S 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc14 C SG CYS 27 C CYS 27 1_555 S FE4 F3S . C F3S 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc15 C SG CYS 31 C CYS 31 1_555 S FE3 F3S . C F3S 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc16 O S13 MGD . C MGD 2001 1_555 R MO 4MO . C 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc17 O S12 MGD . C MGD 2001 1_555 R MO 4MO . C 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc18 P S13 MGD . C MGD 2002 1_555 R MO 4MO . C 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc19 P S12 MGD . C MGD 2002 1_555 R MO 4MO . C 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc20 Q O O . C O 2003 1_555 R MO 4MO . C 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? metalc ? metalc21 D SG CYS 103 D CYS 103 1_555 T FE2 FES . D FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc22 D ND1 HIS 105 D HIS 105 1_555 T FE1 FES . D FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc23 D SG CYS 121 D CYS 121 1_555 T FE2 FES . D FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc24 D ND1 HIS 124 D HIS 124 1_555 T FE1 FES . D FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc25 E SG CYS 24 E CYS 24 1_555 Y FE1 F3S . E F3S 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc26 E SG CYS 27 E CYS 27 1_555 Y FE4 F3S . E F3S 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc27 E SG CYS 31 E CYS 31 1_555 Y FE3 F3S . E F3S 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc28 U S13 MGD . E MGD 2001 1_555 X MO 4MO . E 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc29 U S12 MGD . E MGD 2001 1_555 X MO 4MO . E 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc30 V S12 MGD . E MGD 2002 1_555 X MO 4MO . E 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc31 V S13 MGD . E MGD 2002 1_555 X MO 4MO . E 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc32 W O O . E O 2003 1_555 X MO 4MO . E 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc33 F SG CYS 103 F CYS 103 1_555 Z FE2 FES . F FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc34 F ND1 HIS 105 F HIS 105 1_555 Z FE1 FES . F FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc35 F SG CYS 121 F CYS 121 1_555 Z FE2 FES . F FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc36 F ND1 HIS 124 F HIS 124 1_555 Z FE1 FES . F FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc37 G SG CYS 24 G CYS 24 1_555 EA FE1 F3S . G F3S 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc38 G SG CYS 27 G CYS 27 1_555 EA FE4 F3S . G F3S 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc39 G SG CYS 31 G CYS 31 1_555 EA FE3 F3S . G F3S 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc40 AA S12 MGD . G MGD 2001 1_555 DA MO 4MO . G 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc41 AA S13 MGD . G MGD 2001 1_555 DA MO 4MO . G 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc42 BA S12 MGD . G MGD 2002 1_555 DA MO 4MO . G 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc43 BA S13 MGD . G MGD 2002 1_555 DA MO 4MO . G 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc44 CA O O . G O 2003 1_555 DA MO 4MO . G 4MO 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? metalc ? metalc45 H SG CYS 103 H CYS 103 1_555 FA FE2 FES . H FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc46 H ND1 HIS 105 H HIS 105 1_555 FA FE1 FES . H FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc47 H SG CYS 121 H CYS 121 1_555 FA FE2 FES . H FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc48 H ND1 HIS 124 H HIS 124 1_555 FA FE1 FES . H FES 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? # _chem_comp.formula 'Fe3 S4' _chem_comp.formula_weight 295.795 _chem_comp.id F3S _chem_comp.mon_nstd_flag . _chem_comp.name 'FE3-S4 CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 F3S sing 83 n n FE1 S2 F3S sing 84 n n FE1 S3 F3S sing 85 n n FE3 S1 F3S sing 86 n n FE3 S3 F3S sing 87 n n FE3 S4 F3S sing 88 n n FE4 S2 F3S sing 89 n n FE4 S3 F3S sing 90 n n FE4 S4 F3S sing 91 n n # _atom_sites.entry_id 4AAY _atom_sites.fract_transf_matrix[1][1] 0.006706 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007049 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 MGD A 1 2001 2001 MGD MGD . J 3 MGD A 1 2002 2002 MGD MGD . K 4 O A 1 2003 2003 O O . L 5 4MO A 1 2004 2004 4MO 4MO . M 6 F3S A 1 2005 2005 F3S F3S . N 7 FES B 1 2006 2006 FES FES . O 3 MGD C 1 2001 2001 MGD MGD . P 3 MGD C 1 2002 2002 MGD MGD . Q 4 O C 1 2003 2003 O O . R 5 4MO C 1 2004 2004 4MO 4MO . S 6 F3S C 1 2005 2005 F3S F3S . T 7 FES D 1 2006 2006 FES FES . U 3 MGD E 1 2001 2001 MGD MGD . V 3 MGD E 1 2002 2002 MGD MGD . W 4 O E 1 2003 2003 O O . X 5 4MO E 1 2004 2004 4MO 4MO . Y 6 F3S E 1 2005 2005 F3S F3S . Z 7 FES F 1 2006 2006 FES FES . AA 3 MGD G 1 2001 2001 MGD MGD . BA 3 MGD G 1 2002 2002 MGD MGD . CA 4 O G 1 2003 2003 O O . DA 5 4MO G 1 2004 2004 4MO 4MO . EA 6 F3S G 1 2005 2005 F3S F3S . FA 7 FES H 1 2006 2006 FES FES . GA 8 HOH A 1 3001 3001 HOH HOH . GA 8 HOH A 2 3002 3002 HOH HOH . GA 8 HOH A 3 3003 3003 HOH HOH . GA 8 HOH A 4 3004 3004 HOH HOH . GA 8 HOH A 5 3005 3005 HOH HOH . GA 8 HOH A 6 3006 3006 HOH HOH . HA 8 HOH C 1 3001 3001 HOH HOH . HA 8 HOH C 2 3002 3002 HOH HOH . IA 8 HOH E 1 3001 3001 HOH HOH . IA 8 HOH E 2 3002 3002 HOH HOH . IA 8 HOH E 3 3003 3003 HOH HOH . IA 8 HOH E 4 3004 3004 HOH HOH . IA 8 HOH E 5 3005 3005 HOH HOH . JA 8 HOH G 1 3001 3001 HOH HOH . JA 8 HOH G 2 3002 3002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 F3S . . . M 6 -3.573 -48.017 47.906 1 55.12 ? FE1 F3S 2005 A 1 HETATM 2 FE FE3 F3S . . . M 6 -6.025 -48.86 47.497 1 54.1 ? FE3 F3S 2005 A 1 HETATM 3 FE FE4 F3S . . . M 6 -5.575 -47.777 49.918 1 55.12 ? FE4 F3S 2005 A 1 HETATM 4 S S1 F3S . . . M 6 -4.671 -47.975 45.992 1 55.07 ? S1 F3S 2005 A 1 HETATM 5 S S2 F3S . . . M 6 -4.123 -46.321 49.196 1 53.71 ? S2 F3S 2005 A 1 HETATM 6 S S3 F3S . . . M 6 -4.642 -49.554 49.07 1 53.38 ? S3 F3S 2005 A 1 HETATM 7 S S4 F3S . . . M 6 -7.425 -47.626 48.674 1 54.58 ? S4 F3S 2005 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 375 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 7 #