data_4ABO
#
_model_server_result.job_id            shHmi05bd033yssOu2I24Q 
_model_server_result.datetime_utc      '2024-10-19 16:31:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4abo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1438}' 
#
_entry.id    4ABO 
#
_exptl.entry_id    4ABO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              539.246 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ABO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ABO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 L N N 
? 4 N N N 
? 4 P N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3 S' 
_chem_comp.formula_weight    539.246 
_chem_comp.id                GSP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O3B GSP sing 129 n n 
PG S1G GSP doub 130 n n 
PG O2G GSP sing 131 n n 
PG O3G GSP sing 132 n n 
O3B PB GSP sing 133 n n 
O2G HOG2 GSP sing 134 n n 
O3G HOG3 GSP sing 135 n n 
PB O1B GSP doub 136 n n 
PB O2B GSP sing 137 n n 
PB O3A GSP sing 138 n n 
O2B HOB2 GSP sing 139 n n 
PA O1A GSP doub 140 n n 
PA O2A GSP sing 141 n n 
PA O3A GSP sing 142 n n 
PA O5' GSP sing 143 n n 
O2A HOA2 GSP sing 144 n n 
O5' C5' GSP sing 145 n n 
C5' C4' GSP sing 146 n n 
C5' "H5'1" GSP sing 147 n n 
C5' "H5'2" GSP sing 148 n n 
C4' O4' GSP sing 149 n n 
C4' C3' GSP sing 150 n n 
C4' H4' GSP sing 151 n n 
O4' C1' GSP sing 152 n n 
C3' O3' GSP sing 153 n n 
C3' C2' GSP sing 154 n n 
C3' H3' GSP sing 155 n n 
O3' HO3' GSP sing 156 n n 
C2' O2' GSP sing 157 n n 
C2' C1' GSP sing 158 n n 
C2' H2' GSP sing 159 n n 
O2' HO2' GSP sing 160 n n 
C1' N9 GSP sing 161 n n 
C1' H1' GSP sing 162 n n 
N9 C8 GSP sing 163 n y 
N9 C4 GSP sing 164 n y 
C8 N7 GSP doub 165 n y 
C8 H8 GSP sing 166 n n 
N7 C5 GSP sing 167 n y 
C5 C6 GSP sing 168 n n 
C5 C4 GSP doub 169 n y 
C6 O6 GSP doub 170 n n 
C6 N1 GSP sing 171 n n 
N1 C2 GSP sing 172 n n 
N1 HN1 GSP sing 173 n n 
C2 N2 GSP sing 174 n n 
C2 N3 GSP doub 175 n n 
N2 HN21 GSP sing 176 n n 
N2 HN22 GSP sing 177 n n 
N3 C4 GSP sing 178 n n 
#
_atom_sites.entry_id                     4ABO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 GSP A 1 1438 1438 GSP GSP . 
K 5 GTP B 1 500 500 GTP GTP . 
L 4 GSP C 1 1438 1438 GSP GSP . 
M 5 GTP D 1 500 500 GTP GTP . 
N 4 GSP E 1 1438 1438 GSP GSP . 
O 5 GTP F 1 500 500 GTP GTP . 
P 4 GSP G 1 1438 1438 GSP GSP . 
Q 5 GTP H 1 500 500 GTP GTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GSP . . . P 4 263.434 190.117 296.657 1 59.35 ? PG GSP 1438 G 1 
HETATM 2 O O3B GSP . . . P 4 264.594 190.227 295.5 1 53.95 ? O3B GSP 1438 G 1 
HETATM 3 S S1G GSP . . . P 4 264.586 189.764 298.087 1 65.34 ? S1G GSP 1438 G 1 
HETATM 4 O O2G GSP . . . P 4 262.743 191.422 296.52 1 59.89 ? O2G GSP 1438 G 1 
HETATM 5 O O3G GSP . . . P 4 262.676 188.832 296.583 1 60.25 ? O3G GSP 1438 G 1 
HETATM 6 P PB GSP . . . P 4 264.398 190.634 293.9 1 47.85 ? PB GSP 1438 G 1 
HETATM 7 O O1B GSP . . . P 4 263.295 189.778 293.525 1 46.64 ? O1B GSP 1438 G 1 
HETATM 8 O O2B GSP . . . P 4 264.214 192.07 293.526 1 46.4 ? O2B GSP 1438 G 1 
HETATM 9 P PA GSP . . . P 4 267.18 190.831 293.502 1 50.25 ? PA GSP 1438 G 1 
HETATM 10 O O1A GSP . . . P 4 267.242 192.173 292.842 1 48.59 ? O1A GSP 1438 G 1 
HETATM 11 O O2A GSP . . . P 4 267.453 190.635 294.964 1 48.42 ? O2A GSP 1438 G 1 
HETATM 12 O O3A GSP . . . P 4 265.785 190.185 293.202 1 49.84 ? O3A GSP 1438 G 1 
HETATM 13 O O5' GSP . . . P 4 268.212 189.825 292.688 1 49.24 ? O5' GSP 1438 G 1 
HETATM 14 C C5' GSP . . . P 4 268.882 188.661 293.287 1 47.21 ? C5' GSP 1438 G 1 
HETATM 15 C C4' GSP . . . P 4 269.893 188.167 292.266 1 46.28 ? C4' GSP 1438 G 1 
HETATM 16 O O4' GSP . . . P 4 270.156 189.212 291.262 1 44.15 ? O4' GSP 1438 G 1 
HETATM 17 C C3' GSP . . . P 4 271.303 187.877 292.888 1 46.53 ? C3' GSP 1438 G 1 
HETATM 18 O O3' GSP . . . P 4 271.854 186.735 292.163 1 47.44 ? O3' GSP 1438 G 1 
HETATM 19 C C2' GSP . . . P 4 272.163 189.173 292.585 1 45.46 ? C2' GSP 1438 G 1 
HETATM 20 O O2' GSP . . . P 4 273.575 188.837 292.396 1 48.24 ? O2' GSP 1438 G 1 
HETATM 21 C C1' GSP . . . P 4 271.503 189.749 291.269 1 42.23 ? C1' GSP 1438 G 1 
HETATM 22 N N9 GSP . . . P 4 271.249 191.226 291.223 1 37.17 ? N9 GSP 1438 G 1 
HETATM 23 C C8 GSP . . . P 4 270.527 192.092 292.028 1 36 ? C8 GSP 1438 G 1 
HETATM 24 N N7 GSP . . . P 4 270.514 193.344 291.67 1 33.55 ? N7 GSP 1438 G 1 
HETATM 25 C C5 GSP . . . P 4 271.301 193.319 290.509 1 33.09 ? C5 GSP 1438 G 1 
HETATM 26 C C6 GSP . . . P 4 271.663 194.428 289.632 1 32.14 ? C6 GSP 1438 G 1 
HETATM 27 O O6 GSP . . . P 4 271.287 195.59 289.829 1 27.94 ? O6 GSP 1438 G 1 
HETATM 28 N N1 GSP . . . P 4 272.468 193.964 288.578 1 29.02 ? N1 GSP 1438 G 1 
HETATM 29 C C2 GSP . . . P 4 272.889 192.65 288.353 1 29.87 ? C2 GSP 1438 G 1 
HETATM 30 N N2 GSP . . . P 4 273.651 192.369 287.313 1 31.61 ? N2 GSP 1438 G 1 
HETATM 31 N N3 GSP . . . P 4 272.546 191.618 289.177 1 31.96 ? N3 GSP 1438 G 1 
HETATM 32 C C4 GSP . . . P 4 271.748 192.026 290.234 1 33.8 ? C4 GSP 1438 G 1 
#
_model_server_stats.io_time_ms              77 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#