data_4ABZ # _model_server_result.job_id IBnKoBzIHiqUGi5jo2hEIg _model_server_result.datetime_utc '2024-11-18 10:27:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4abz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4ABZ # _exptl.entry_id 4ABZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 587.665 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TIGECYCLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ABZ _cell.length_a 68.49 _cell.length_b 68.49 _cell.length_c 179.25 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ABZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 68.49 68.49 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O12 T1C . AAA T1C 301 1_555 C MG MG . AAA MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc2 B O11 T1C . AAA T1C 301 1_555 C MG MG . AAA MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc3 C MG MG . AAA MG 302 1_555 G O HOH . AAA HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc4 C MG MG . AAA MG 302 1_555 G O HOH . AAA HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc5 C MG MG . AAA MG 302 1_555 G O HOH . AAA HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'C29 H41 N5 O8 2' _chem_comp.formula_weight 587.665 _chem_comp.id T1C _chem_comp.mon_nstd_flag . _chem_comp.name TIGECYCLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C94 C93 T1C sing 277 n n C93 C95 T1C sing 278 n n C93 C96 T1C sing 279 n n C93 N92 T1C sing 280 n n N92 C92 T1C sing 281 n n C92 C91 T1C sing 282 n n C91 O91 T1C doub 283 n n C91 N9 T1C sing 284 n n N9 C9 T1C sing 285 n n C9 C8 T1C doub 286 n y C9 C10 T1C sing 287 n y C8 C7 T1C sing 288 n y C7 N7 T1C sing 289 n n C7 C61 T1C doub 290 n y C6 C61 T1C sing 291 n n N7 C71 T1C sing 292 n n N7 C72 T1C sing 293 n n C61 C1A T1C sing 294 n y C6 C51 T1C sing 295 n n C51 C5 T1C sing 296 n n C51 C1B T1C sing 297 n n C5 C41 T1C sing 298 n n C41 C4 T1C sing 299 n n C41 C1C T1C sing 300 n n C4 N4 T1C sing 301 n n C4 C3 T1C sing 302 n n N4 C43 T1C sing 303 n n N4 C42 T1C sing 304 n n C3 O3 T1C sing 305 n n C3 C2 T1C doub 306 n n C2 C21 T1C sing 307 n n C2 C1 T1C sing 308 n n C21 O21 T1C doub 309 n n C21 N21 T1C sing 310 n n C1 O1 T1C doub 311 n n C1 C1C T1C sing 312 n n C1C O1C T1C sing 313 n n C1C C12 T1C sing 314 n n C12 O12 T1C sing 315 n n C12 C1B T1C doub 316 n n C1B C11 T1C sing 317 n n C11 O11 T1C doub 318 n n C11 C1A T1C sing 319 n n C1A C10 T1C doub 320 n y C10 O10 T1C sing 321 n n C94 H941 T1C sing 322 n n C94 H942 T1C sing 323 n n C94 H943 T1C sing 324 n n C95 H951 T1C sing 325 n n C95 H952 T1C sing 326 n n C95 H953 T1C sing 327 n n C96 H961 T1C sing 328 n n C96 H962 T1C sing 329 n n C96 H963 T1C sing 330 n n N92 H92 T1C sing 331 n n C92 H921 T1C sing 332 n n C92 H922 T1C sing 333 n n N9 H9 T1C sing 334 n n C8 H8 T1C sing 335 n n C71 H711 T1C sing 336 n n C71 H712 T1C sing 337 n n C71 H713 T1C sing 338 n n C72 H721 T1C sing 339 n n C72 H722 T1C sing 340 n n C72 H723 T1C sing 341 n n C6 H61C T1C sing 342 n n C6 H62C T1C sing 343 n n C51 H51 T1C sing 344 n n C5 H51C T1C sing 345 n n C5 H52C T1C sing 346 n n C41 H41 T1C sing 347 n n C4 H4 T1C sing 348 n n C43 H431 T1C sing 349 n n C43 H432 T1C sing 350 n n C43 H433 T1C sing 351 n n C42 H421 T1C sing 352 n n C42 H422 T1C sing 353 n n C42 H423 T1C sing 354 n n O3 H3 T1C sing 355 n n N21 H211 T1C sing 356 n n N21 H212 T1C sing 357 n n O1C H1C T1C sing 358 n n O12 H12 T1C sing 359 n n O10 H10 T1C sing 360 n n N4 H42 T1C sing 361 n n N7 H7 T1C sing 362 n n # _atom_sites.entry_id 4ABZ _atom_sites.fract_transf_matrix[1][1] 0.014601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T1C AAA 1 301 1209 T1C T1C . C 3 MG AAA 1 302 1210 MG MG . D 4 CL AAA 1 303 1211 CL CL . E 4 CL AAA 1 304 1212 CL CL . F 4 CL AAA 1 305 1213 CL CL . G 5 HOH AAA 1 401 2004 HOH HOH . G 5 HOH AAA 2 402 2007 HOH HOH . G 5 HOH AAA 3 403 2028 HOH HOH . G 5 HOH AAA 4 404 2045 HOH HOH . G 5 HOH AAA 5 405 2021 HOH HOH . G 5 HOH AAA 6 406 2043 HOH HOH . G 5 HOH AAA 7 407 2016 HOH HOH . G 5 HOH AAA 8 408 2029 HOH HOH . G 5 HOH AAA 9 409 2047 HOH HOH . G 5 HOH AAA 10 410 2042 HOH HOH . G 5 HOH AAA 11 411 2015 HOH HOH . G 5 HOH AAA 12 412 2017 HOH HOH . G 5 HOH AAA 13 413 2013 HOH HOH . G 5 HOH AAA 14 414 2008 HOH HOH . G 5 HOH AAA 15 415 2023 HOH HOH . G 5 HOH AAA 16 416 2041 HOH HOH . G 5 HOH AAA 17 417 2038 HOH HOH . G 5 HOH AAA 18 418 2022 HOH HOH . G 5 HOH AAA 19 419 2040 HOH HOH . G 5 HOH AAA 20 420 2026 HOH HOH . G 5 HOH AAA 21 421 2034 HOH HOH . G 5 HOH AAA 22 422 2010 HOH HOH . G 5 HOH AAA 23 423 2018 HOH HOH . G 5 HOH AAA 24 424 2035 HOH HOH . G 5 HOH AAA 25 425 2025 HOH HOH . G 5 HOH AAA 26 426 2024 HOH HOH . G 5 HOH AAA 27 427 2012 HOH HOH . G 5 HOH AAA 28 428 2005 HOH HOH . G 5 HOH AAA 29 429 2003 HOH HOH . G 5 HOH AAA 30 430 2049 HOH HOH . G 5 HOH AAA 31 431 2036 HOH HOH . G 5 HOH AAA 32 432 2020 HOH HOH . G 5 HOH AAA 33 433 2050 HOH HOH . G 5 HOH AAA 34 434 2044 HOH HOH . G 5 HOH AAA 35 435 2039 HOH HOH . G 5 HOH AAA 36 436 2032 HOH HOH . G 5 HOH AAA 37 437 2037 HOH HOH . G 5 HOH AAA 38 438 2033 HOH HOH . G 5 HOH AAA 39 439 2011 HOH HOH . G 5 HOH AAA 40 440 2051 HOH HOH . G 5 HOH AAA 41 441 2052 HOH HOH . G 5 HOH AAA 42 442 2048 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C94 T1C . . . B 2 27.972 47.067 31.292 1 66.85 ? C94 T1C 301 AAA 1 HETATM 2 C C93 T1C . . . B 2 26.463 46.787 31.137 1 70.15 ? C93 T1C 301 AAA 1 HETATM 3 C C95 T1C . . . B 2 26.076 46.921 29.658 1 68.85 ? C95 T1C 301 AAA 1 HETATM 4 C C96 T1C . . . B 2 25.492 47.72 31.929 1 74.28 ? C96 T1C 301 AAA 1 HETATM 5 N N92 T1C . . . B 2 26.286 45.388 31.63 1 65.66 ? N92 T1C 301 AAA 1 HETATM 6 C C92 T1C . . . B 2 25.022 44.709 31.312 1 62.97 ? C92 T1C 301 AAA 1 HETATM 7 C C91 T1C . . . B 2 24.617 43.839 32.464 1 59.53 ? C91 T1C 301 AAA 1 HETATM 8 O O91 T1C . . . B 2 25.019 43.994 33.61 1 64.83 ? O91 T1C 301 AAA 1 HETATM 9 N N9 T1C . . . B 2 23.796 42.901 32.125 1 50.72 ? N9 T1C 301 AAA 1 HETATM 10 C C9 T1C . . . B 2 23.193 41.985 32.937 1 47 ? C9 T1C 301 AAA 1 HETATM 11 C C8 T1C . . . B 2 22.565 42.314 34.119 1 43.45 ? C8 T1C 301 AAA 1 HETATM 12 C C7 T1C . . . B 2 21.867 41.336 34.851 1 45.87 ? C7 T1C 301 AAA 1 HETATM 13 N N7 T1C . . . B 2 21.219 41.624 36.089 1 47.54 ? N7 T1C 301 AAA 1 HETATM 14 C C71 T1C . . . B 2 22.246 41.227 37.091 1 48.87 ? C71 T1C 301 AAA 1 HETATM 15 C C72 T1C . . . B 2 20.908 43.046 36.387 1 47.36 ? C72 T1C 301 AAA 1 HETATM 16 C C61 T1C . . . B 2 21.908 39.991 34.392 1 39.56 ? C61 T1C 301 AAA 1 HETATM 17 C C6 T1C . . . B 2 21.209 38.946 35.185 1 39 ? C6 T1C 301 AAA 1 HETATM 18 C C51 T1C . . . B 2 21.877 37.602 35.11 1 36.31 ? C51 T1C 301 AAA 1 HETATM 19 C C5 T1C . . . B 2 20.933 36.611 35.809 1 33.25 ? C5 T1C 301 AAA 1 HETATM 20 C C41 T1C . . . B 2 21.646 35.22 35.621 1 32.58 ? C41 T1C 301 AAA 1 HETATM 21 C C4 T1C . . . B 2 21.036 34.169 36.588 1 31.95 ? C4 T1C 301 AAA 1 HETATM 22 N N4 T1C . . . B 2 22.029 33.297 37.364 1 32 ? N4 T1C 301 AAA 1 HETATM 23 C C43 T1C . . . B 2 23.155 32.611 36.607 1 31.89 ? C43 T1C 301 AAA 1 HETATM 24 C C42 T1C . . . B 2 22.67 34.076 38.445 1 31.44 ? C42 T1C 301 AAA 1 HETATM 25 C C3 T1C . . . B 2 20.049 33.296 35.909 1 33.96 ? C3 T1C 301 AAA 1 HETATM 26 O O3 T1C . . . B 2 19.89 32.09 36.433 1 32.5 ? O3 T1C 301 AAA 1 HETATM 27 C C2 T1C . . . B 2 19.409 33.624 34.745 1 32.77 ? C2 T1C 301 AAA 1 HETATM 28 C C21 T1C . . . B 2 18.134 32.939 34.322 1 33.74 ? C21 T1C 301 AAA 1 HETATM 29 O O21 T1C . . . B 2 17.527 32.055 34.93 1 33.29 ? O21 T1C 301 AAA 1 HETATM 30 N N21 T1C . . . B 2 17.592 33.193 33.128 1 34.77 ? N21 T1C 301 AAA 1 HETATM 31 C C1 T1C . . . B 2 20.045 34.471 33.915 1 34.72 ? C1 T1C 301 AAA 1 HETATM 32 O O1 T1C . . . B 2 19.439 34.892 32.893 1 33.59 ? O1 T1C 301 AAA 1 HETATM 33 C C1C T1C . . . B 2 21.515 34.82 34.154 1 32.36 ? C1C T1C 301 AAA 1 HETATM 34 O O1C T1C . . . B 2 22.321 33.653 33.781 1 31.48 ? O1C T1C 301 AAA 1 HETATM 35 C C12 T1C . . . B 2 22.094 35.931 33.251 1 36.8 ? C12 T1C 301 AAA 1 HETATM 36 O O12 T1C . . . B 2 22.599 35.616 32.03 1 34.42 ? O12 T1C 301 AAA 1 HETATM 37 C C1B T1C . . . B 2 22.186 37.245 33.648 1 36.64 ? C1B T1C 301 AAA 1 HETATM 38 C C11 T1C . . . B 2 22.572 38.216 32.802 1 38.62 ? C11 T1C 301 AAA 1 HETATM 39 O O11 T1C . . . B 2 23.039 37.997 31.71 1 34.88 ? O11 T1C 301 AAA 1 HETATM 40 C C1A T1C . . . B 2 22.581 39.65 33.247 1 40.26 ? C1A T1C 301 AAA 1 HETATM 41 C C10 T1C . . . B 2 23.215 40.648 32.522 1 43.92 ? C10 T1C 301 AAA 1 HETATM 42 O O10 T1C . . . B 2 23.816 40.415 31.358 1 47.24 ? O10 T1C 301 AAA 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #