data_4AC0 # _model_server_result.job_id JPOK-0dx57ZavC_CYw54Dg _model_server_result.datetime_utc '2025-02-17 08:38:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ac0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1204}' # _entry.id 4AC0 # _exptl.entry_id 4AC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.476 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AC0 _cell.length_a 71.88 _cell.length_b 71.88 _cell.length_c 93.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 99 A HIS 100 1_555 C MG MG . A MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 B O6 MIY . A MIY 1204 1_555 C MG MG . A MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc3 B O5 MIY . A MIY 1204 1_555 C MG MG . A MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc4 C MG MG . A MG 1205 1_555 F O HOH . A HOH 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc5 C MG MG . A MG 1205 1_555 F O HOH . A HOH 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc6 C MG MG . A MG 1205 1_555 F O HOH . A HOH 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? # _chem_comp.formula 'C23 H27 N3 O7' _chem_comp.formula_weight 457.476 _chem_comp.id MIY _chem_comp.mon_nstd_flag . _chem_comp.name '(4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MINOCYCLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 C21 MIY doub 237 n n C21 N2 MIY sing 238 n n C21 C2 MIY sing 239 n n N2 HN21 MIY sing 240 n n N2 HN22 MIY sing 241 n n C2 C1 MIY sing 242 n n C2 C3 MIY doub 243 n n C1 O1 MIY doub 244 n n C1 C18 MIY sing 245 n n C3 O2 MIY sing 246 n n C3 C4 MIY sing 247 n n O2 HO2 MIY sing 248 n n C4 N1 MIY sing 249 n n C4 C5 MIY sing 250 n n C4 H4 MIY sing 251 n n N1 C20 MIY sing 252 n n N1 C19 MIY sing 253 n n C20 H201 MIY sing 254 n n C20 H202 MIY sing 255 n n C20 H203 MIY sing 256 n n C19 H191 MIY sing 257 n n C19 H192 MIY sing 258 n n C19 H193 MIY sing 259 n n C5 C18 MIY sing 260 n n C5 C6 MIY sing 261 n n C5 H5 MIY sing 262 n n C18 O7 MIY sing 263 n n C18 C17 MIY sing 264 n n O7 HO7 MIY sing 265 n n C17 O6 MIY sing 266 n n C17 C16 MIY doub 267 n n O6 HO6 MIY sing 268 n n C16 C7 MIY sing 269 n n C16 C15 MIY sing 270 n n C7 C6 MIY sing 271 n n C7 C8 MIY sing 272 n n C7 H7 MIY sing 273 n n C6 H61 MIY sing 274 n n C6 H62 MIY sing 275 n n C15 O5 MIY doub 276 n n C15 C14 MIY sing 277 n n C14 C9 MIY doub 278 n y C14 C13 MIY sing 279 n y C9 C8 MIY sing 280 n n C9 C10 MIY sing 281 n y C8 H81 MIY sing 282 n n C8 H82 MIY sing 283 n n C13 O4 MIY sing 284 n n C13 C12 MIY doub 285 n y O4 HO4 MIY sing 286 n n C12 C11 MIY sing 287 n y C12 H12 MIY sing 288 n n C11 C10 MIY doub 289 n y C11 H11 MIY sing 290 n n C10 N7 MIY sing 291 n n N7 CN7 MIY sing 292 n n N7 C71 MIY sing 293 n n CN7 HN71 MIY sing 294 n n CN7 HN72 MIY sing 295 n n CN7 HN73 MIY sing 296 n n C71 H711 MIY sing 297 n n C71 H712 MIY sing 298 n n C71 H713 MIY sing 299 n n # _atom_sites.entry_id 4AC0 _atom_sites.fract_transf_matrix[1][1] 0.013912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010703 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MIY A 1 1204 1204 MIY MIY . C 3 MG A 1 1205 1205 MG MG . D 4 PO4 A 1 1206 1206 PO4 PO4 . E 4 PO4 A 1 1207 1207 PO4 PO4 . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 MIY . . . B 2 16.537 -4.2 -8.072 1 41.53 ? O8 MIY 1204 A 1 HETATM 2 C C21 MIY . . . B 2 16.459 -3.007 -8.475 1 42.22 ? C21 MIY 1204 A 1 HETATM 3 N N2 MIY . . . B 2 17.446 -2.379 -9.164 1 43.2 ? N2 MIY 1204 A 1 HETATM 4 C C2 MIY . . . B 2 15.172 -2.39 -8.329 1 39.43 ? C2 MIY 1204 A 1 HETATM 5 C C1 MIY . . . B 2 14.978 -1.055 -8.792 1 40.98 ? C1 MIY 1204 A 1 HETATM 6 O O1 MIY . . . B 2 15.739 -0.51 -9.602 1 42.95 ? O1 MIY 1204 A 1 HETATM 7 C C3 MIY . . . B 2 14.193 -3.089 -7.757 1 42.99 ? C3 MIY 1204 A 1 HETATM 8 O O2 MIY . . . B 2 14.49 -4.309 -7.302 1 45.16 ? O2 MIY 1204 A 1 HETATM 9 C C4 MIY . . . B 2 12.769 -2.6 -7.653 1 41.61 ? C4 MIY 1204 A 1 HETATM 10 N N1 MIY . . . B 2 12.126 -2.931 -6.354 1 45.89 ? N1 MIY 1204 A 1 HETATM 11 C C20 MIY . . . B 2 10.666 -2.593 -6.427 1 43.9 ? C20 MIY 1204 A 1 HETATM 12 C C19 MIY . . . B 2 12.752 -2.266 -5.168 1 42.53 ? C19 MIY 1204 A 1 HETATM 13 C C5 MIY . . . B 2 12.612 -1.145 -8.177 1 44.06 ? C5 MIY 1204 A 1 HETATM 14 C C18 MIY . . . B 2 13.886 -0.319 -8.082 1 42.04 ? C18 MIY 1204 A 1 HETATM 15 O O7 MIY . . . B 2 14.257 -0.049 -6.716 1 45.84 ? O7 MIY 1204 A 1 HETATM 16 C C17 MIY . . . B 2 13.822 1.008 -8.751 1 42.62 ? C17 MIY 1204 A 1 HETATM 17 O O6 MIY . . . B 2 14.675 1.959 -8.331 1 40.78 ? O6 MIY 1204 A 1 HETATM 18 C C16 MIY . . . B 2 12.968 1.215 -9.735 1 44.84 ? C16 MIY 1204 A 1 HETATM 19 C C7 MIY . . . B 2 11.992 0.128 -10.16 1 47.62 ? C7 MIY 1204 A 1 HETATM 20 C C6 MIY . . . B 2 12.508 -1.21 -9.689 1 46.78 ? C6 MIY 1204 A 1 HETATM 21 C C15 MIY . . . B 2 12.913 2.515 -10.402 1 44.85 ? C15 MIY 1204 A 1 HETATM 22 O O5 MIY . . . B 2 13.679 3.467 -10.044 1 43.77 ? O5 MIY 1204 A 1 HETATM 23 C C14 MIY . . . B 2 12.083 2.609 -11.651 1 45.2 ? C14 MIY 1204 A 1 HETATM 24 C C9 MIY . . . B 2 11.5 1.454 -12.248 1 43.9 ? C9 MIY 1204 A 1 HETATM 25 C C8 MIY . . . B 2 11.746 0.06 -11.663 1 44.17 ? C8 MIY 1204 A 1 HETATM 26 C C13 MIY . . . B 2 11.922 3.88 -12.201 1 44.24 ? C13 MIY 1204 A 1 HETATM 27 O O4 MIY . . . B 2 12.491 4.896 -11.574 1 38.11 ? O4 MIY 1204 A 1 HETATM 28 C C12 MIY . . . B 2 11.13 4.032 -13.357 1 41.99 ? C12 MIY 1204 A 1 HETATM 29 C C11 MIY . . . B 2 10.552 2.886 -13.943 1 41.16 ? C11 MIY 1204 A 1 HETATM 30 C C10 MIY . . . B 2 10.743 1.567 -13.441 1 42.22 ? C10 MIY 1204 A 1 HETATM 31 N N7 MIY . . . B 2 10.126 0.38 -14.054 1 42.4 ? N7 MIY 1204 A 1 HETATM 32 C CN7 MIY . A . B 2 9.294 -0.422 -13.103 0.6 44.31 ? CN7 MIY 1204 A 1 HETATM 33 C CN7 MIY . B . B 2 10.909 -0.306 -15.07 0.4 36.56 ? CN7 MIY 1204 A 1 HETATM 34 C C71 MIY . A . B 2 9.276 0.781 -15.153 0.6 44.69 ? C71 MIY 1204 A 1 HETATM 35 C C71 MIY . B . B 2 8.8 0.75 -14.552 0.4 40.63 ? C71 MIY 1204 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #