data_4AC5 # _model_server_result.job_id 6yDl7rAuTkZ6ydqEzCt8Tw _model_server_result.datetime_utc '2024-10-19 16:45:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ac5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1326}' # _entry.id 4AC5 # _exptl.entry_id 4AC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 887.199 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOPHEOPHYTIN B' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AC5 _cell.length_a 57.5 _cell.length_b 84.6 _cell.length_c 375.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C FME 1 H FME 1 1_555 B N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A NE2 HIS 91 C HIS 91 1_555 E FE HEM . C HEM 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc2 A NE2 HIS 124 C HIS 124 1_555 H FE HEM . C HEM 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc3 A NE2 HIS 136 C HIS 136 1_555 F FE HEM . C HEM 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc4 A NE2 HIS 248 C HIS 248 1_555 G FE HEM . C HEM 1335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc5 A NE2 HIS 309 C HIS 309 1_555 H FE HEM . C HEM 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc6 C NE2 HIS 174 L HIS 173 1_555 I MG BCB . L BCB 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc7 C NE2 HIS 191 L HIS 190 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc8 C NE2 HIS 231 L HIS 230 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc9 D NE2 HIS 201 M HIS 200 1_555 M MG BCB . M BCB 1325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc10 D NE2 HIS 218 M HIS 217 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc11 D OE2 GLU 233 M GLU 232 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc12 D NE2 HIS 265 M HIS 264 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'C55 H74 N4 O6' _chem_comp.formula_weight 887.199 _chem_comp.id BPB _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOPHEOPHYTIN B' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 BPB sing 216 n n C3 C2 BPB doub 217 e n C3 C4 BPB sing 218 n n C5 C3 BPB sing 219 n n C6 C5 BPB sing 220 n n C7 C6 BPB sing 221 n n C8 C7 BPB sing 222 n n C9 C8 BPB sing 223 n n NB C4B BPB sing 224 n y NC C1C BPB sing 225 n y NC C4C BPB doub 226 n y ND C1D BPB sing 227 n y C10 C8 BPB sing 228 n n C11 C10 BPB sing 229 n n C11 C12 BPB sing 230 n n C13 C12 BPB sing 231 n n C13 C14 BPB sing 232 n n C15 C13 BPB sing 233 n n C16 C15 BPB sing 234 n n C17 C16 BPB sing 235 n n C18 C17 BPB sing 236 n n C19 C18 BPB sing 237 n n C1A NA BPB doub 238 n y C1A CHA BPB sing 239 n y C1B NB BPB sing 240 n y C1B C2B BPB doub 241 n y C1C C2C BPB sing 242 n n C1D CHD BPB doub 243 n y O1D CGD BPB doub 244 n n C20 C18 BPB sing 245 n n C2A C1A BPB sing 246 n n C2A CAA BPB sing 247 n n O2A C1 BPB sing 248 n n O2A CGA BPB sing 249 n n C2B C3B BPB sing 250 n y C2C CMC BPB sing 251 n n C2D C1D BPB sing 252 n y C2D CMD BPB sing 253 n n O2D CGD BPB sing 254 n n C3A C2A BPB sing 255 n n C3A C4A BPB sing 256 n n C3B C4B BPB doub 257 n y C3B CAB BPB sing 258 n n C3C C2C BPB sing 259 n n C3C CAC BPB doub 260 e n C3D C2D BPB doub 261 n y C4A NA BPB sing 262 n y C4A CHB BPB doub 263 n y C4B CHC BPB sing 264 n y C4C C3C BPB sing 265 n n C4D ND BPB sing 266 n y C4D C3D BPB sing 267 n y CAB CBB BPB sing 268 n n CAB OBB BPB doub 269 n n CAC CBC BPB sing 270 n n CAD C3D BPB sing 271 n n CBA CAA BPB sing 272 n n CBA CGA BPB sing 273 n n CBD CAD BPB sing 274 n n CBD CHA BPB sing 275 n n OBD CAD BPB doub 276 n n CED O2D BPB sing 277 n n CGA O1A BPB doub 278 n n CGD CBD BPB sing 279 n n CHA C4D BPB doub 280 n y CHB C1B BPB sing 281 n y CHC C1C BPB doub 282 n y CHD C4C BPB sing 283 n y CMA C3A BPB sing 284 n n CMB C2B BPB sing 285 n n C1 H1 BPB sing 286 n n C1 H1A BPB sing 287 n n C2 H2 BPB sing 288 n n C4 H4 BPB sing 289 n n C4 H4A BPB sing 290 n n C4 H4B BPB sing 291 n n C5 H5 BPB sing 292 n n C5 H5A BPB sing 293 n n C6 H6 BPB sing 294 n n C6 H6A BPB sing 295 n n C7 H7 BPB sing 296 n n C7 H7A BPB sing 297 n n C8 H8 BPB sing 298 n n C9 H9 BPB sing 299 n n C9 H9A BPB sing 300 n n C9 H9B BPB sing 301 n n NB H171 BPB sing 302 n n ND H181 BPB sing 303 n n C10 H10 BPB sing 304 n n C10 H10A BPB sing 305 n n C11 H11 BPB sing 306 n n C11 H11A BPB sing 307 n n C12 H12 BPB sing 308 n n C12 H12A BPB sing 309 n n C13 H13 BPB sing 310 n n C14 H14 BPB sing 311 n n C14 H14A BPB sing 312 n n C14 H14B BPB sing 313 n n C15 H15 BPB sing 314 n n C15 H15A BPB sing 315 n n C16 H16 BPB sing 316 n n C16 H16A BPB sing 317 n n C17 H17 BPB sing 318 n n C17 H17A BPB sing 319 n n C18 H18 BPB sing 320 n n C19 H19 BPB sing 321 n n C19 H19A BPB sing 322 n n C19 H19B BPB sing 323 n n C20 H20 BPB sing 324 n n C20 H20A BPB sing 325 n n C20 H20B BPB sing 326 n n C2A H42 BPB sing 327 n n C2C H43 BPB sing 328 n n C3A H44 BPB sing 329 n n CAA HAA BPB sing 330 n n CAA HAAA BPB sing 331 n n CAC HAC BPB sing 332 n n CBA HBA BPB sing 333 n n CBA HBAA BPB sing 334 n n CBB HBB BPB sing 335 n n CBB HBBA BPB sing 336 n n CBB HBBB BPB sing 337 n n CBC HBC BPB sing 338 n n CBC HBCA BPB sing 339 n n CBC H55 BPB sing 340 n n CBD HBD BPB sing 341 n n CED HED BPB sing 342 n n CED HEDA BPB sing 343 n n CED HEDB BPB sing 344 n n CHB HHB BPB sing 345 n n CHC HHC BPB sing 346 n n CHD HHD BPB sing 347 n n CMA HMA BPB sing 348 n n CMA HMAA BPB sing 349 n n CMA HMAB BPB sing 350 n n CMB HMB BPB sing 351 n n CMB HMBA BPB sing 352 n n CMB HMBB BPB sing 353 n n CMC HMC BPB sing 354 n n CMC HMCA BPB sing 355 n n CMC HMCB BPB sing 356 n n CMD HMD BPB sing 357 n n CMD HMDA BPB sing 358 n n CMD HMDB BPB sing 359 n n # _atom_sites.entry_id 4AC5 _atom_sites.fract_transf_matrix[1][1] 0.017391 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEM C 1 1333 1333 HEM HEM . F 5 HEM C 1 1334 1334 HEM HEM . G 5 HEM C 1 1335 1335 HEM HEM . H 5 HEM C 1 1336 1336 HEM HEM . I 6 BCB L 1 1274 1274 BCB BCB . J 6 BCB L 1 1275 1275 BCB BCB . K 7 BPB L 1 1276 1276 BPB BPB . L 6 BCB M 1 1324 1324 BCB BCB . M 6 BCB M 1 1325 1325 BCB BCB . N 7 BPB M 1 1326 1326 BPB BPB . O 8 FE2 M 1 1327 1327 FE2 FE2 . P 9 MQ7 M 1 1328 1328 MQ7 MQ7 . Q 10 NS5 M 1 1329 1329 NS5 NS5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BPB . . . N 7 11.408 38.179 -42.414 1 26.42 ? C1 BPB 1326 M 1 HETATM 2 C C2 BPB . . . N 7 10.752 39.445 -42.92 1 26.47 ? C2 BPB 1326 M 1 HETATM 3 C C3 BPB . . . N 7 10.617 40.553 -42.168 1 26.53 ? C3 BPB 1326 M 1 HETATM 4 C C4 BPB . . . N 7 11.119 40.609 -40.752 1 26.54 ? C4 BPB 1326 M 1 HETATM 5 C C5 BPB . . . N 7 9.949 41.772 -42.765 1 26.6 ? C5 BPB 1326 M 1 HETATM 6 C C6 BPB . . . N 7 8.458 41.777 -42.443 1 26.69 ? C6 BPB 1326 M 1 HETATM 7 C C7 BPB . . . N 7 7.714 42.784 -43.313 1 26.78 ? C7 BPB 1326 M 1 HETATM 8 C C8 BPB . . . N 7 7.03 43.854 -42.462 1 26.85 ? C8 BPB 1326 M 1 HETATM 9 C C9 BPB . . . N 7 5.512 43.657 -42.436 1 26.88 ? C9 BPB 1326 M 1 HETATM 10 N NA BPB . . . N 7 8.061 31.329 -41.325 1 26.77 ? NA BPB 1326 M 1 HETATM 11 N NB BPB . . . N 7 6.756 29.659 -43.469 1 26.53 ? NB BPB 1326 M 1 HETATM 12 N NC BPB . . . N 7 7.993 27.043 -42.562 1 26.75 ? NC BPB 1326 M 1 HETATM 13 N ND BPB . . . N 7 9.111 28.616 -40.371 1 27.12 ? ND BPB 1326 M 1 HETATM 14 C C10 BPB . . . N 7 7.475 45.245 -42.93 1 26.88 ? C10 BPB 1326 M 1 HETATM 15 C C11 BPB . . . N 7 6.497 45.967 -43.858 1 26.9 ? C11 BPB 1326 M 1 HETATM 16 C C12 BPB . . . N 7 7.004 45.994 -45.299 1 26.9 ? C12 BPB 1326 M 1 HETATM 17 C C13 BPB . . . N 7 6.479 47.203 -46.07 1 26.91 ? C13 BPB 1326 M 1 HETATM 18 C C14 BPB . . . N 7 5.092 46.944 -46.654 1 26.94 ? C14 BPB 1326 M 1 HETATM 19 C C15 BPB . . . N 7 7.463 47.563 -47.176 1 26.88 ? C15 BPB 1326 M 1 HETATM 20 C C16 BPB . . . N 7 7.916 49.015 -47.066 1 26.86 ? C16 BPB 1326 M 1 HETATM 21 C C1A BPB . . . N 7 8.65 31.784 -40.299 1 26.87 ? C1A BPB 1326 M 1 HETATM 22 O O1A BPB . . . N 7 11.967 35.72 -41.176 1 26.33 ? O1A BPB 1326 M 1 HETATM 23 C C1B BPB . . . N 7 6.351 30.911 -43.813 1 26.53 ? C1B BPB 1326 M 1 HETATM 24 C C1C BPB . . . N 7 7.496 26.652 -43.736 1 26.7 ? C1C BPB 1326 M 1 HETATM 25 C C1D BPB . . . N 7 9.564 27.425 -39.946 1 27.07 ? C1D BPB 1326 M 1 HETATM 26 O O1D BPB . . . N 7 9.309 33.237 -36.79 1 27.46 ? O1D BPB 1326 M 1 HETATM 27 C C2A BPB . . . N 7 8.441 33.266 -40.164 1 26.71 ? C2A BPB 1326 M 1 HETATM 28 O O2A BPB . . . N 7 10.443 37.381 -41.729 1 26.38 ? O2A BPB 1326 M 1 HETATM 29 C C2B BPB . . . N 7 5.848 31.042 -45.21 1 26.51 ? C2B BPB 1326 M 1 HETATM 30 C C2C BPB . . . N 7 7.719 25.19 -43.98 1 26.74 ? C2C BPB 1326 M 1 HETATM 31 C C2D BPB . . . N 7 10.332 27.554 -38.681 1 27.13 ? C2D BPB 1326 M 1 HETATM 32 O O2D BPB . . . N 7 8.017 31.324 -36.58 1 27.5 ? O2D BPB 1326 M 1 HETATM 33 C C3A BPB . . . N 7 7.158 33.455 -40.948 1 26.68 ? C3A BPB 1326 M 1 HETATM 34 C C3B BPB . . . N 7 5.997 29.664 -45.701 1 26.5 ? C3B BPB 1326 M 1 HETATM 35 C C3C BPB . . . N 7 8.349 24.76 -42.67 1 26.77 ? C3C BPB 1326 M 1 HETATM 36 C C3D BPB . . . N 7 10.33 28.992 -38.318 1 27.21 ? C3D BPB 1326 M 1 HETATM 37 C C4A BPB . . . N 7 7.182 32.217 -41.787 1 26.67 ? C4A BPB 1326 M 1 HETATM 38 C C4B BPB . . . N 7 6.56 28.892 -44.568 1 26.54 ? C4B BPB 1326 M 1 HETATM 39 C C4C BPB . . . N 7 8.532 26.067 -41.958 1 26.81 ? C4C BPB 1326 M 1 HETATM 40 C C4D BPB . . . N 7 9.588 29.487 -39.383 1 27.16 ? C4D BPB 1326 M 1 HETATM 41 C CAA BPB . . . N 7 9.612 34.008 -40.798 1 26.58 ? CAA BPB 1326 M 1 HETATM 42 C CAB BPB . . . N 7 5.653 29.163 -47.063 1 26.47 ? CAB BPB 1326 M 1 HETATM 43 C CAC BPB . . . N 7 9.686 24.073 -42.897 1 26.76 ? CAC BPB 1326 M 1 HETATM 44 C CAD BPB . . . N 7 10.667 30.197 -37.476 1 27.31 ? CAD BPB 1326 M 1 HETATM 45 C CBA BPB . . . N 7 9.809 35.406 -40.223 1 26.45 ? CBA BPB 1326 M 1 HETATM 46 C CBB BPB . . . N 7 4.347 28.443 -47.204 1 26.45 ? CBB BPB 1326 M 1 HETATM 47 O OBB BPB . . . N 7 6.412 29.345 -48.001 1 26.45 ? OBB BPB 1326 M 1 HETATM 48 C CBC BPB . . . N 7 9.613 22.641 -42.41 1 26.77 ? CBC BPB 1326 M 1 HETATM 49 C CBD BPB . . . N 7 10.089 31.429 -38.092 1 27.29 ? CBD BPB 1326 M 1 HETATM 50 O OBD BPB . . . N 7 11.793 30.255 -36.857 1 27.37 ? OBD BPB 1326 M 1 HETATM 51 C CED BPB . . . N 7 6.692 31.852 -36.629 1 27.53 ? CED BPB 1326 M 1 HETATM 52 C CGA BPB . . . N 7 10.827 36.147 -41.058 1 26.38 ? CGA BPB 1326 M 1 HETATM 53 C CGD BPB . . . N 7 9.139 32.075 -37.126 1 27.41 ? CGD BPB 1326 M 1 HETATM 54 C CHA BPB . . . N 7 9.405 30.948 -39.31 1 27.11 ? CHA BPB 1326 M 1 HETATM 55 C CHB BPB . . . N 7 6.411 32.063 -42.876 1 26.59 ? CHB BPB 1326 M 1 HETATM 56 C CHC BPB . . . N 7 6.87 27.439 -44.629 1 26.62 ? CHC BPB 1326 M 1 HETATM 57 C CHD BPB . . . N 7 9.292 26.174 -40.693 1 26.92 ? CHD BPB 1326 M 1 HETATM 58 C CMA BPB . . . N 7 5.932 33.482 -40.043 1 26.67 ? CMA BPB 1326 M 1 HETATM 59 C CMB BPB . . . N 7 5.322 32.256 -45.928 1 26.49 ? CMB BPB 1326 M 1 HETATM 60 C CMC BPB . . . N 7 6.422 24.437 -44.249 1 26.76 ? CMC BPB 1326 M 1 HETATM 61 C CMD BPB . . . N 7 11.055 26.604 -37.762 1 27.14 ? CMD BPB 1326 M 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 61 #