data_4AC5
#
_model_server_result.job_id            cM63WmAJl8P1fXFS0zfDVw 
_model_server_result.datetime_utc      '2024-10-19 16:49:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ac5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1328}' 
#
_entry.id    4AC5 
#
_exptl.entry_id    4AC5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              648.999 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            MENAQUINONE-7 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4AC5 
_cell.length_a            57.5 
_cell.length_b            84.6 
_cell.length_c            375.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AC5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      9 
_struct_asym.id                             P 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C FME 1 H FME 1 1_555 B N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A NE2 HIS 91 C HIS 91 1_555 E FE HEM . C HEM 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc2 A NE2 HIS 124 C HIS 124 1_555 H FE HEM . C HEM 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc3 A NE2 HIS 136 C HIS 136 1_555 F FE HEM . C HEM 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc4 A NE2 HIS 248 C HIS 248 1_555 G FE HEM . C HEM 1335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc5 A NE2 HIS 309 C HIS 309 1_555 H FE HEM . C HEM 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc6 C NE2 HIS 174 L HIS 173 1_555 I MG BCB . L BCB 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc7 C NE2 HIS 191 L HIS 190 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc8 C NE2 HIS 231 L HIS 230 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc9 D NE2 HIS 201 M HIS 200 1_555 M MG BCB . M BCB 1325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc10 D NE2 HIS 218 M HIS 217 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc11 D OE2 GLU 233 M GLU 232 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc12 D NE2 HIS 265 M HIS 264 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
#
_chem_comp.formula           'C46 H64 O2' 
_chem_comp.formula_weight    648.999 
_chem_comp.id                MQ7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              MENAQUINONE-7 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MQ7 doub 628 n n 
C1 C2 MQ7 sing 629 n n 
C1 C10 MQ7 sing 630 n n 
C2 C2M MQ7 sing 631 n n 
C2 C3 MQ7 doub 632 n n 
C2M H2M1 MQ7 sing 633 n n 
C2M H2M2 MQ7 sing 634 n n 
C2M H2M3 MQ7 sing 635 n n 
C3 C4 MQ7 sing 636 n n 
C3 C11 MQ7 sing 637 n n 
C4 O4 MQ7 doub 638 n n 
C4 C5 MQ7 sing 639 n n 
C5 C6 MQ7 doub 640 n y 
C5 C10 MQ7 sing 641 n y 
C6 C7 MQ7 sing 642 n y 
C6 H6 MQ7 sing 643 n n 
C7 C8 MQ7 doub 644 n y 
C7 H7 MQ7 sing 645 n n 
C8 C9 MQ7 sing 646 n y 
C8 H8 MQ7 sing 647 n n 
C9 C10 MQ7 doub 648 n y 
C9 H9 MQ7 sing 649 n n 
C11 C12 MQ7 sing 650 n n 
C11 H111 MQ7 sing 651 n n 
C11 H112 MQ7 sing 652 n n 
C12 C13 MQ7 doub 653 e n 
C12 H12 MQ7 sing 654 n n 
C13 C14 MQ7 sing 655 n n 
C13 C15 MQ7 sing 656 n n 
C14 H141 MQ7 sing 657 n n 
C14 H142 MQ7 sing 658 n n 
C14 H143 MQ7 sing 659 n n 
C15 C16 MQ7 sing 660 n n 
C15 H151 MQ7 sing 661 n n 
C15 H152 MQ7 sing 662 n n 
C16 C17 MQ7 sing 663 n n 
C16 H161 MQ7 sing 664 n n 
C16 H162 MQ7 sing 665 n n 
C17 C18 MQ7 doub 666 e n 
C17 H17 MQ7 sing 667 n n 
C18 C19 MQ7 sing 668 n n 
C18 C20 MQ7 sing 669 n n 
C19 H191 MQ7 sing 670 n n 
C19 H192 MQ7 sing 671 n n 
C19 H193 MQ7 sing 672 n n 
C20 C21 MQ7 sing 673 n n 
C20 H201 MQ7 sing 674 n n 
C20 H202 MQ7 sing 675 n n 
C21 C22 MQ7 sing 676 n n 
C21 H211 MQ7 sing 677 n n 
C21 H212 MQ7 sing 678 n n 
C22 C23 MQ7 doub 679 e n 
C22 H22 MQ7 sing 680 n n 
C23 C24 MQ7 sing 681 n n 
C23 C25 MQ7 sing 682 n n 
C24 H241 MQ7 sing 683 n n 
C24 H242 MQ7 sing 684 n n 
C24 H243 MQ7 sing 685 n n 
C25 C26 MQ7 sing 686 n n 
C25 H251 MQ7 sing 687 n n 
C25 H252 MQ7 sing 688 n n 
C26 C27 MQ7 sing 689 n n 
C26 H261 MQ7 sing 690 n n 
C26 H262 MQ7 sing 691 n n 
C27 C28 MQ7 doub 692 e n 
C27 H27 MQ7 sing 693 n n 
C28 C29 MQ7 sing 694 n n 
C28 C30 MQ7 sing 695 n n 
C29 H291 MQ7 sing 696 n n 
C29 H292 MQ7 sing 697 n n 
C29 H293 MQ7 sing 698 n n 
C30 C31 MQ7 sing 699 n n 
C30 H301 MQ7 sing 700 n n 
C30 H302 MQ7 sing 701 n n 
C31 C32 MQ7 sing 702 n n 
C31 H311 MQ7 sing 703 n n 
C31 H312 MQ7 sing 704 n n 
C32 C33 MQ7 doub 705 e n 
C32 H32 MQ7 sing 706 n n 
C33 C34 MQ7 sing 707 n n 
C33 C35 MQ7 sing 708 n n 
C34 H341 MQ7 sing 709 n n 
C34 H342 MQ7 sing 710 n n 
C34 H343 MQ7 sing 711 n n 
C35 C36 MQ7 sing 712 n n 
C35 H351 MQ7 sing 713 n n 
C35 H352 MQ7 sing 714 n n 
C36 C37 MQ7 sing 715 n n 
C36 H361 MQ7 sing 716 n n 
C36 H362 MQ7 sing 717 n n 
C37 C38 MQ7 doub 718 e n 
C37 H37 MQ7 sing 719 n n 
C38 C39 MQ7 sing 720 n n 
C38 C40 MQ7 sing 721 n n 
C39 H391 MQ7 sing 722 n n 
C39 H392 MQ7 sing 723 n n 
C39 H393 MQ7 sing 724 n n 
C40 C41 MQ7 sing 725 n n 
C40 H401 MQ7 sing 726 n n 
C40 H402 MQ7 sing 727 n n 
C41 C42 MQ7 sing 728 n n 
C41 H411 MQ7 sing 729 n n 
C41 H412 MQ7 sing 730 n n 
C42 C43 MQ7 doub 731 n n 
C42 H42 MQ7 sing 732 n n 
C43 C44 MQ7 sing 733 n n 
C43 C45 MQ7 sing 734 n n 
C44 H441 MQ7 sing 735 n n 
C44 H442 MQ7 sing 736 n n 
C44 H443 MQ7 sing 737 n n 
C45 H451 MQ7 sing 738 n n 
C45 H452 MQ7 sing 739 n n 
C45 H453 MQ7 sing 740 n n 
#
_atom_sites.entry_id                     4AC5 
_atom_sites.fract_transf_matrix[1][1]    0.017391 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01182 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002661 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 HEM C 1 1333 1333 HEM HEM . 
F 5 HEM C 1 1334 1334 HEM HEM . 
G 5 HEM C 1 1335 1335 HEM HEM . 
H 5 HEM C 1 1336 1336 HEM HEM . 
I 6 BCB L 1 1274 1274 BCB BCB . 
J 6 BCB L 1 1275 1275 BCB BCB . 
K 7 BPB L 1 1276 1276 BPB BPB . 
L 6 BCB M 1 1324 1324 BCB BCB . 
M 6 BCB M 1 1325 1325 BCB BCB . 
N 7 BPB M 1 1326 1326 BPB BPB . 
O 8 FE2 M 1 1327 1327 FE2 FE2 . 
P 9 MQ7 M 1 1328 1328 MQ7 MQ7 . 
Q 10 NS5 M 1 1329 1329 NS5 NS5 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MQ7 . . . P 9 1.362 10.652 -29.362 1 9.92 ? C1 MQ7 1328 M 1 
HETATM 2 O O1 MQ7 . . . P 9 0.746 11.742 -29.354 1 9.96 ? O1 MQ7 1328 M 1 
HETATM 3 C C2 MQ7 . . . P 9 1.472 9.862 -30.624 1 9.9 ? C2 MQ7 1328 M 1 
HETATM 4 C C2M MQ7 . . . P 9 0.83 10.396 -31.884 1 9.9 ? C2M MQ7 1328 M 1 
HETATM 5 C C3 MQ7 . . . P 9 2.213 8.561 -30.63 1 9.88 ? C3 MQ7 1328 M 1 
HETATM 6 C C4 MQ7 . . . P 9 2.833 8.056 -29.369 1 9.88 ? C4 MQ7 1328 M 1 
HETATM 7 O O4 MQ7 . . . P 9 3.45 6.968 -29.364 1 9.87 ? O4 MQ7 1328 M 1 
HETATM 8 C C5 MQ7 . . . P 9 2.722 8.848 -28.108 1 9.89 ? C5 MQ7 1328 M 1 
HETATM 9 C C6 MQ7 . . . P 9 3.296 8.397 -26.92 1 9.89 ? C6 MQ7 1328 M 1 
HETATM 10 C C7 MQ7 . . . P 9 3.181 9.153 -25.753 1 9.88 ? C7 MQ7 1328 M 1 
HETATM 11 C C8 MQ7 . . . P 9 2.494 10.369 -25.749 1 9.89 ? C8 MQ7 1328 M 1 
HETATM 12 C C9 MQ7 . . . P 9 1.9 10.865 -26.911 1 9.91 ? C9 MQ7 1328 M 1 
HETATM 13 C C10 MQ7 . . . P 9 1.987 10.145 -28.103 1 9.91 ? C10 MQ7 1328 M 1 
HETATM 14 C C11 MQ7 . . . P 9 2.334 7.734 -31.896 1 9.87 ? C11 MQ7 1328 M 1 
HETATM 15 C C12 MQ7 . . . P 9 3.455 8.235 -32.781 1 9.88 ? C12 MQ7 1328 M 1 
HETATM 16 C C13 MQ7 . . . P 9 4.59 7.549 -33.007 1 9.9 ? C13 MQ7 1328 M 1 
HETATM 17 C C14 MQ7 . . . P 9 4.837 6.208 -32.368 1 9.9 ? C14 MQ7 1328 M 1 
HETATM 18 C C15 MQ7 . . . P 9 5.626 8.168 -33.921 1 9.95 ? C15 MQ7 1328 M 1 
HETATM 19 C C16 MQ7 . . . P 9 6.149 7.185 -34.97 1 10.05 ? C16 MQ7 1328 M 1 
HETATM 20 C C17 MQ7 . . . P 9 5.083 6.799 -35.977 1 10.15 ? C17 MQ7 1328 M 1 
HETATM 21 C C18 MQ7 . . . P 9 5 7.312 -37.22 1 10.22 ? C18 MQ7 1328 M 1 
HETATM 22 C C19 MQ7 . . . P 9 5.972 8.348 -37.715 1 10.23 ? C19 MQ7 1328 M 1 
HETATM 23 C C20 MQ7 . . . P 9 3.89 6.839 -38.136 1 10.28 ? C20 MQ7 1328 M 1 
HETATM 24 C C21 MQ7 . . . P 9 4.406 5.778 -39.109 1 10.31 ? C21 MQ7 1328 M 1 
HETATM 25 C C22 MQ7 . . . P 9 3.886 4.411 -38.711 1 10.35 ? C22 MQ7 1328 M 1 
HETATM 26 C C23 MQ7 . . . P 9 4.057 3.298 -39.454 1 10.37 ? C23 MQ7 1328 M 1 
HETATM 27 C C24 MQ7 . . . P 9 4.803 3.329 -40.761 1 10.32 ? C24 MQ7 1328 M 1 
HETATM 28 C C25 MQ7 . . . P 9 3.498 1.98 -38.956 1 10.42 ? C25 MQ7 1328 M 1 
HETATM 29 C C26 MQ7 . . . P 9 2.079 1.73 -39.469 1 10.46 ? C26 MQ7 1328 M 1 
HETATM 30 C C27 MQ7 . . . P 9 1.46 0.568 -38.715 1 10.47 ? C27 MQ7 1328 M 1 
HETATM 31 C C28 MQ7 . . . P 9 0.188 0.147 -38.883 1 10.46 ? C28 MQ7 1328 M 1 
HETATM 32 C C29 MQ7 . . . P 9 -0.747 0.818 -39.852 1 10.47 ? C29 MQ7 1328 M 1 
HETATM 33 C C30 MQ7 . . . P 9 -0.32 -1.024 -38.068 1 10.41 ? C30 MQ7 1328 M 1 
HETATM 34 C C31 MQ7 . . . P 9 -0.104 -2.348 -38.796 1 10.34 ? C31 MQ7 1328 M 1 
HETATM 35 C C32 MQ7 . . . P 9 -0.617 -3.488 -37.941 1 10.27 ? C32 MQ7 1328 M 1 
HETATM 36 C C33 MQ7 . . . P 9 -1.656 -4.268 -38.295 1 10.21 ? C33 MQ7 1328 M 1 
HETATM 37 C C34 MQ7 . . . P 9 -2.387 -4.059 -39.594 1 10.25 ? C34 MQ7 1328 M 1 
HETATM 38 C C35 MQ7 . . . P 9 -2.087 -5.387 -37.371 1 10.09 ? C35 MQ7 1328 M 1 
HETATM 39 C C36 MQ7 . . . P 9 -3.327 -5.013 -36.563 1 9.93 ? C36 MQ7 1328 M 1 
HETATM 40 C C37 MQ7 . . . P 9 -3.607 -6.128 -35.579 1 9.74 ? C37 MQ7 1328 M 1 
HETATM 41 C C38 MQ7 . . . P 9 -4.833 -6.603 -35.283 1 9.6 ? C38 MQ7 1328 M 1 
HETATM 42 C C39 MQ7 . . . P 9 -6.075 -6.043 -35.919 1 9.58 ? C39 MQ7 1328 M 1 
HETATM 43 C C40 MQ7 . . . P 9 -4.966 -7.726 -34.279 1 9.49 ? C40 MQ7 1328 M 1 
HETATM 44 C C41 MQ7 . . . P 9 -4.632 -9.069 -34.924 1 9.39 ? C41 MQ7 1328 M 1 
HETATM 45 C C42 MQ7 . . . P 9 -3.207 -9.458 -34.59 1 9.31 ? C42 MQ7 1328 M 1 
HETATM 46 C C43 MQ7 . . . P 9 -2.239 -9.598 -35.516 1 9.28 ? C43 MQ7 1328 M 1 
HETATM 47 C C44 MQ7 . . . P 9 -2.501 -9.378 -36.98 1 9.27 ? C44 MQ7 1328 M 1 
HETATM 48 C C45 MQ7 . . . P 9 -0.859 -9.987 -35.078 1 9.26 ? C45 MQ7 1328 M 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           48 
#