data_4AC5 # _model_server_result.job_id pLsmEK7VXU0NHOkkWvH4iA _model_server_result.datetime_utc '2025-02-22 23:19:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ac5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1333}' # _entry.id 4AC5 # _exptl.entry_id 4AC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AC5 _cell.length_a 57.5 _cell.length_b 84.6 _cell.length_c 375.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C FME 1 H FME 1 1_555 B N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A NE2 HIS 91 C HIS 91 1_555 E FE HEM . C HEM 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc2 A NE2 HIS 124 C HIS 124 1_555 H FE HEM . C HEM 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc3 A NE2 HIS 136 C HIS 136 1_555 F FE HEM . C HEM 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc4 A NE2 HIS 248 C HIS 248 1_555 G FE HEM . C HEM 1335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc5 A NE2 HIS 309 C HIS 309 1_555 H FE HEM . C HEM 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc6 C NE2 HIS 174 L HIS 173 1_555 I MG BCB . L BCB 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc7 C NE2 HIS 191 L HIS 190 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc8 C NE2 HIS 231 L HIS 230 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc9 D NE2 HIS 201 M HIS 200 1_555 M MG BCB . M BCB 1325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc10 D NE2 HIS 218 M HIS 217 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc11 D OE2 GLU 233 M GLU 232 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc12 D NE2 HIS 265 M HIS 264 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 440 n n CHA C4D HEM doub 441 n n CHA HHA HEM sing 442 n n CHB C4A HEM sing 443 n n CHB C1B HEM doub 444 n n CHB HHB HEM sing 445 n n CHC C4B HEM sing 446 n n CHC C1C HEM doub 447 n n CHC HHC HEM sing 448 n n CHD C4C HEM doub 449 n n CHD C1D HEM sing 450 n n CHD HHD HEM sing 451 n n C1A C2A HEM doub 452 n y C1A NA HEM sing 453 n y C2A C3A HEM sing 454 n y C2A CAA HEM sing 455 n n C3A C4A HEM doub 456 n y C3A CMA HEM sing 457 n n C4A NA HEM sing 458 n y CMA HMA HEM sing 459 n n CMA HMAA HEM sing 460 n n CMA HMAB HEM sing 461 n n CAA CBA HEM sing 462 n n CAA HAA HEM sing 463 n n CAA HAAA HEM sing 464 n n CBA CGA HEM sing 465 n n CBA HBA HEM sing 466 n n CBA HBAA HEM sing 467 n n CGA O1A HEM doub 468 n n CGA O2A HEM sing 469 n n C1B C2B HEM sing 470 n n C1B NB HEM sing 471 n n C2B C3B HEM doub 472 n n C2B CMB HEM sing 473 n n C3B C4B HEM sing 474 n n C3B CAB HEM sing 475 n n C4B NB HEM doub 476 n n CMB HMB HEM sing 477 n n CMB HMBA HEM sing 478 n n CMB HMBB HEM sing 479 n n CAB CBB HEM doub 480 n n CAB HAB HEM sing 481 n n CBB HBB HEM sing 482 n n CBB HBBA HEM sing 483 n n C1C C2C HEM sing 484 n y C1C NC HEM sing 485 n y C2C C3C HEM doub 486 n y C2C CMC HEM sing 487 n n C3C C4C HEM sing 488 n y C3C CAC HEM sing 489 n n C4C NC HEM sing 490 n y CMC HMC HEM sing 491 n n CMC HMCA HEM sing 492 n n CMC HMCB HEM sing 493 n n CAC CBC HEM doub 494 n n CAC HAC HEM sing 495 n n CBC HBC HEM sing 496 n n CBC HBCA HEM sing 497 n n C1D C2D HEM sing 498 n n C1D ND HEM doub 499 n n C2D C3D HEM doub 500 n n C2D CMD HEM sing 501 n n C3D C4D HEM sing 502 n n C3D CAD HEM sing 503 n n C4D ND HEM sing 504 n n CMD HMD HEM sing 505 n n CMD HMDA HEM sing 506 n n CMD HMDB HEM sing 507 n n CAD CBD HEM sing 508 n n CAD HAD HEM sing 509 n n CAD HADA HEM sing 510 n n CBD CGD HEM sing 511 n n CBD HBD HEM sing 512 n n CBD HBDA HEM sing 513 n n CGD O1D HEM doub 514 n n CGD O2D HEM sing 515 n n O2A H2A HEM sing 516 n n O2D H2D HEM sing 517 n n FE NA HEM sing 518 n n FE NB HEM sing 519 n n FE NC HEM sing 520 n n FE ND HEM sing 521 n n # _atom_sites.entry_id 4AC5 _atom_sites.fract_transf_matrix[1][1] 0.017391 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEM C 1 1333 1333 HEM HEM . F 5 HEM C 1 1334 1334 HEM HEM . G 5 HEM C 1 1335 1335 HEM HEM . H 5 HEM C 1 1336 1336 HEM HEM . I 6 BCB L 1 1274 1274 BCB BCB . J 6 BCB L 1 1275 1275 BCB BCB . K 7 BPB L 1 1276 1276 BPB BPB . L 6 BCB M 1 1324 1324 BCB BCB . M 6 BCB M 1 1325 1325 BCB BCB . N 7 BPB M 1 1326 1326 BPB BPB . O 8 FE2 M 1 1327 1327 FE2 FE2 . P 9 MQ7 M 1 1328 1328 MQ7 MQ7 . Q 10 NS5 M 1 1329 1329 NS5 NS5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 5 -12.484 38.622 -110.662 1 16.13 ? CHA HEM 1333 C 1 HETATM 2 C CHB HEM . . . E 5 -17.337 38.607 -110.527 1 16.2 ? CHB HEM 1333 C 1 HETATM 3 C CHC HEM . . . E 5 -17.273 39.062 -105.694 1 16.14 ? CHC HEM 1333 C 1 HETATM 4 C CHD HEM . . . E 5 -12.419 39.1 -105.787 1 16.1 ? CHD HEM 1333 C 1 HETATM 5 C C1A HEM . . . E 5 -13.804 38.632 -111.065 1 16.13 ? C1A HEM 1333 C 1 HETATM 6 C C2A HEM . . . E 5 -14.298 38.666 -112.431 1 16.09 ? C2A HEM 1333 C 1 HETATM 7 C C3A HEM . . . E 5 -15.638 38.662 -112.386 1 16.14 ? C3A HEM 1333 C 1 HETATM 8 C C4A HEM . . . E 5 -16.04 38.625 -110.994 1 16.17 ? C4A HEM 1333 C 1 HETATM 9 C CMA HEM . . . E 5 -16.611 38.69 -113.59 1 16.17 ? CMA HEM 1333 C 1 HETATM 10 C CAA HEM . . . E 5 -13.424 38.701 -113.706 1 16 ? CAA HEM 1333 C 1 HETATM 11 C CBA HEM . . . E 5 -13.353 40.132 -114.229 1 15.9 ? CBA HEM 1333 C 1 HETATM 12 C CGA HEM . . . E 5 -12.48 40.182 -115.45 1 15.85 ? CGA HEM 1333 C 1 HETATM 13 O O1A HEM . . . E 5 -11.236 40.163 -115.285 1 15.81 ? O1A HEM 1333 C 1 HETATM 14 O O2A HEM . . . E 5 -13.024 40.246 -116.582 1 15.83 ? O2A HEM 1333 C 1 HETATM 15 C C1B HEM . . . E 5 -17.75 38.656 -109.212 1 16.21 ? C1B HEM 1333 C 1 HETATM 16 C C2B HEM . . . E 5 -19.108 38.475 -108.733 1 16.21 ? C2B HEM 1333 C 1 HETATM 17 C C3B HEM . . . E 5 -19.093 38.598 -107.399 1 16.2 ? C3B HEM 1333 C 1 HETATM 18 C C4B HEM . . . E 5 -17.725 38.865 -106.984 1 16.18 ? C4B HEM 1333 C 1 HETATM 19 C CMB HEM . . . E 5 -20.341 38.189 -109.625 1 16.2 ? CMB HEM 1333 C 1 HETATM 20 C CAB HEM . . . E 5 -20.311 38.484 -106.452 1 16.21 ? CAB HEM 1333 C 1 HETATM 21 C CBB HEM . . . E 5 -20.994 37.34 -106.343 1 16.2 ? CBB HEM 1333 C 1 HETATM 22 C C1C HEM . . . E 5 -15.954 39.08 -105.28 1 16.09 ? C1C HEM 1333 C 1 HETATM 23 C C2C HEM . . . E 5 -15.476 39.096 -103.908 1 16.04 ? C2C HEM 1333 C 1 HETATM 24 C C3C HEM . . . E 5 -14.133 39.101 -103.939 1 16.03 ? C3C HEM 1333 C 1 HETATM 25 C C4C HEM . . . E 5 -13.719 39.096 -105.328 1 16.07 ? C4C HEM 1333 C 1 HETATM 26 C CMC HEM . . . E 5 -16.383 39.102 -102.653 1 16.01 ? CMC HEM 1333 C 1 HETATM 27 C CAC HEM . . . E 5 -13.143 39.123 -102.748 1 15.99 ? CAC HEM 1333 C 1 HETATM 28 C CBC HEM . . . E 5 -13.323 38.416 -101.628 1 15.97 ? CBC HEM 1333 C 1 HETATM 29 C C1D HEM . . . E 5 -11.986 38.812 -107.066 1 16.14 ? C1D HEM 1333 C 1 HETATM 30 C C2D HEM . . . E 5 -10.672 38.318 -107.42 1 16.16 ? C2D HEM 1333 C 1 HETATM 31 C C3D HEM . . . E 5 -10.687 38.164 -108.949 1 16.19 ? C3D HEM 1333 C 1 HETATM 32 C C4D HEM . . . E 5 -12.012 38.586 -109.363 1 16.16 ? C4D HEM 1333 C 1 HETATM 33 C CMD HEM . . . E 5 -9.501 38.008 -106.46 1 16.16 ? CMD HEM 1333 C 1 HETATM 34 C CAD HEM . . . E 5 -9.525 37.667 -109.843 1 16.25 ? CAD HEM 1333 C 1 HETATM 35 C CBD HEM . . . E 5 -9.843 36.286 -110.412 1 16.33 ? CBD HEM 1333 C 1 HETATM 36 C CGD HEM . . . E 5 -8.735 35.313 -110.096 1 16.38 ? CGD HEM 1333 C 1 HETATM 37 O O1D HEM . . . E 5 -7.606 35.483 -110.628 1 16.43 ? O1D HEM 1333 C 1 HETATM 38 O O2D HEM . . . E 5 -8.985 34.359 -109.313 1 16.4 ? O2D HEM 1333 C 1 HETATM 39 N NA HEM . . . E 5 -14.895 38.613 -110.219 1 16.16 ? NA HEM 1333 C 1 HETATM 40 N NB HEM . . . E 5 -16.937 38.885 -108.119 1 16.19 ? NB HEM 1333 C 1 HETATM 41 N NC HEM . . . E 5 -14.851 39.088 -106.114 1 16.11 ? NC HEM 1333 C 1 HETATM 42 N ND HEM . . . E 5 -12.737 38.945 -108.229 1 16.15 ? ND HEM 1333 C 1 HETATM 43 FE FE HEM . . . E 5 -14.861 38.879 -108.167 1 16.17 ? FE HEM 1333 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #