data_4AC5
#
_model_server_result.job_id            by5MSSdw15DDjLoLo8wqHQ 
_model_server_result.datetime_utc      '2025-02-22 23:08:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ac5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1334}' 
#
_entry.id    4AC5 
#
_exptl.entry_id    4AC5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4AC5 
_cell.length_a            57.5 
_cell.length_b            84.6 
_cell.length_c            375.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AC5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C FME 1 H FME 1 1_555 B N TYR 2 H TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A NE2 HIS 91 C HIS 91 1_555 E FE HEM . C HEM 1333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc2 A NE2 HIS 124 C HIS 124 1_555 H FE HEM . C HEM 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc3 A NE2 HIS 136 C HIS 136 1_555 F FE HEM . C HEM 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc4 A NE2 HIS 248 C HIS 248 1_555 G FE HEM . C HEM 1335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc5 A NE2 HIS 309 C HIS 309 1_555 H FE HEM . C HEM 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc6 C NE2 HIS 174 L HIS 173 1_555 I MG BCB . L BCB 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc7 C NE2 HIS 191 L HIS 190 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc8 C NE2 HIS 231 L HIS 230 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc9 D NE2 HIS 201 M HIS 200 1_555 M MG BCB . M BCB 1325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc10 D NE2 HIS 218 M HIS 217 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc11 D OE2 GLU 233 M GLU 232 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc12 D NE2 HIS 265 M HIS 264 1_555 O FE FE2 . M FE2 1327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 440 n n 
CHA C4D HEM doub 441 n n 
CHA HHA HEM sing 442 n n 
CHB C4A HEM sing 443 n n 
CHB C1B HEM doub 444 n n 
CHB HHB HEM sing 445 n n 
CHC C4B HEM sing 446 n n 
CHC C1C HEM doub 447 n n 
CHC HHC HEM sing 448 n n 
CHD C4C HEM doub 449 n n 
CHD C1D HEM sing 450 n n 
CHD HHD HEM sing 451 n n 
C1A C2A HEM doub 452 n y 
C1A NA HEM sing 453 n y 
C2A C3A HEM sing 454 n y 
C2A CAA HEM sing 455 n n 
C3A C4A HEM doub 456 n y 
C3A CMA HEM sing 457 n n 
C4A NA HEM sing 458 n y 
CMA HMA HEM sing 459 n n 
CMA HMAA HEM sing 460 n n 
CMA HMAB HEM sing 461 n n 
CAA CBA HEM sing 462 n n 
CAA HAA HEM sing 463 n n 
CAA HAAA HEM sing 464 n n 
CBA CGA HEM sing 465 n n 
CBA HBA HEM sing 466 n n 
CBA HBAA HEM sing 467 n n 
CGA O1A HEM doub 468 n n 
CGA O2A HEM sing 469 n n 
C1B C2B HEM sing 470 n n 
C1B NB HEM sing 471 n n 
C2B C3B HEM doub 472 n n 
C2B CMB HEM sing 473 n n 
C3B C4B HEM sing 474 n n 
C3B CAB HEM sing 475 n n 
C4B NB HEM doub 476 n n 
CMB HMB HEM sing 477 n n 
CMB HMBA HEM sing 478 n n 
CMB HMBB HEM sing 479 n n 
CAB CBB HEM doub 480 n n 
CAB HAB HEM sing 481 n n 
CBB HBB HEM sing 482 n n 
CBB HBBA HEM sing 483 n n 
C1C C2C HEM sing 484 n y 
C1C NC HEM sing 485 n y 
C2C C3C HEM doub 486 n y 
C2C CMC HEM sing 487 n n 
C3C C4C HEM sing 488 n y 
C3C CAC HEM sing 489 n n 
C4C NC HEM sing 490 n y 
CMC HMC HEM sing 491 n n 
CMC HMCA HEM sing 492 n n 
CMC HMCB HEM sing 493 n n 
CAC CBC HEM doub 494 n n 
CAC HAC HEM sing 495 n n 
CBC HBC HEM sing 496 n n 
CBC HBCA HEM sing 497 n n 
C1D C2D HEM sing 498 n n 
C1D ND HEM doub 499 n n 
C2D C3D HEM doub 500 n n 
C2D CMD HEM sing 501 n n 
C3D C4D HEM sing 502 n n 
C3D CAD HEM sing 503 n n 
C4D ND HEM sing 504 n n 
CMD HMD HEM sing 505 n n 
CMD HMDA HEM sing 506 n n 
CMD HMDB HEM sing 507 n n 
CAD CBD HEM sing 508 n n 
CAD HAD HEM sing 509 n n 
CAD HADA HEM sing 510 n n 
CBD CGD HEM sing 511 n n 
CBD HBD HEM sing 512 n n 
CBD HBDA HEM sing 513 n n 
CGD O1D HEM doub 514 n n 
CGD O2D HEM sing 515 n n 
O2A H2A HEM sing 516 n n 
O2D H2D HEM sing 517 n n 
FE NA HEM sing 518 n n 
FE NB HEM sing 519 n n 
FE NC HEM sing 520 n n 
FE ND HEM sing 521 n n 
#
_atom_sites.entry_id                     4AC5 
_atom_sites.fract_transf_matrix[1][1]    0.017391 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01182 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002661 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 HEM C 1 1333 1333 HEM HEM . 
F 5 HEM C 1 1334 1334 HEM HEM . 
G 5 HEM C 1 1335 1335 HEM HEM . 
H 5 HEM C 1 1336 1336 HEM HEM . 
I 6 BCB L 1 1274 1274 BCB BCB . 
J 6 BCB L 1 1275 1275 BCB BCB . 
K 7 BPB L 1 1276 1276 BPB BPB . 
L 6 BCB M 1 1324 1324 BCB BCB . 
M 6 BCB M 1 1325 1325 BCB BCB . 
N 7 BPB M 1 1326 1326 BPB BPB . 
O 8 FE2 M 1 1327 1327 FE2 FE2 . 
P 9 MQ7 M 1 1328 1328 MQ7 MQ7 . 
Q 10 NS5 M 1 1329 1329 NS5 NS5 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 5 -7.76 39.803 -94.95 1 2 ? CHA HEM 1334 C 1 
HETATM 2 C CHB HEM . . . F 5 -10.438 37.671 -98.381 1 2 ? CHB HEM 1334 C 1 
HETATM 3 C CHC HEM . . . F 5 -9.237 33.312 -96.629 1 2 ? CHC HEM 1334 C 1 
HETATM 4 C CHD HEM . . . F 5 -7.452 35.477 -92.679 1 2 ? CHD HEM 1334 C 1 
HETATM 5 C C1A HEM . . . F 5 -8.624 39.63 -96.01 1 2 ? C1A HEM 1334 C 1 
HETATM 6 C C2A HEM . . . F 5 -9.315 40.671 -96.753 1 2 ? C2A HEM 1334 C 1 
HETATM 7 C C3A HEM . . . F 5 -10.053 40.074 -97.701 1 2 ? C3A HEM 1334 C 1 
HETATM 8 C C4A HEM . . . F 5 -9.857 38.64 -97.59 1 2 ? C4A HEM 1334 C 1 
HETATM 9 C CMA HEM . . . F 5 -10.963 40.771 -98.741 1 2 ? CMA HEM 1334 C 1 
HETATM 10 C CAA HEM . . . F 5 -9.209 42.195 -96.492 1 2 ? CAA HEM 1334 C 1 
HETATM 11 C CBA HEM . . . F 5 -10.291 42.635 -95.507 1 2 ? CBA HEM 1334 C 1 
HETATM 12 C CGA HEM . . . F 5 -10.122 44.086 -95.128 1 2 ? CGA HEM 1334 C 1 
HETATM 13 O O1A HEM . . . F 5 -11.052 44.887 -95.401 1 2 ? O1A HEM 1334 C 1 
HETATM 14 O O2A HEM . . . F 5 -9.065 44.447 -94.546 1 2 ? O2A HEM 1334 C 1 
HETATM 15 C C1B HEM . . . F 5 -10.231 36.31 -98.29 1 2 ? C1B HEM 1334 C 1 
HETATM 16 C C2B HEM . . . F 5 -10.491 35.325 -99.324 1 2 ? C2B HEM 1334 C 1 
HETATM 17 C C3B HEM . . . F 5 -10.157 34.12 -98.838 1 2 ? C3B HEM 1334 C 1 
HETATM 18 C C4B HEM . . . F 5 -9.677 34.301 -97.481 1 2 ? C4B HEM 1334 C 1 
HETATM 19 C CMB HEM . . . F 5 -11.054 35.635 -100.732 1 2 ? CMB HEM 1334 C 1 
HETATM 20 C CAB HEM . . . F 5 -10.255 32.759 -99.565 1 2 ? CAB HEM 1334 C 1 
HETATM 21 C CBB HEM . . . F 5 -9.584 32.525 -100.696 1 2 ? CBB HEM 1334 C 1 
HETATM 22 C C1C HEM . . . F 5 -8.608 33.51 -95.418 1 2 ? C1C HEM 1334 C 1 
HETATM 23 C C2C HEM . . . F 5 -7.976 32.494 -94.599 1 2 ? C2C HEM 1334 C 1 
HETATM 24 C C3C HEM . . . F 5 -7.482 33.095 -93.51 1 2 ? C3C HEM 1334 C 1 
HETATM 25 C C4C HEM . . . F 5 -7.784 34.509 -93.598 1 2 ? C4C HEM 1334 C 1 
HETATM 26 C CMC HEM . . . F 5 -7.89 30.986 -94.933 1 2 ? CMC HEM 1334 C 1 
HETATM 27 C CAC HEM . . . F 5 -6.719 32.413 -92.352 1 2 ? CAC HEM 1334 C 1 
HETATM 28 C CBC HEM . . . F 5 -5.426 32.684 -92.149 1 2 ? CBC HEM 1334 C 1 
HETATM 29 C C1D HEM . . . F 5 -7.286 36.822 -92.931 1 2 ? C1D HEM 1334 C 1 
HETATM 30 C C2D HEM . . . F 5 -6.589 37.755 -92.074 1 2 ? C2D HEM 1334 C 1 
HETATM 31 C C3D HEM . . . F 5 -6.686 39.113 -92.785 1 2 ? C3D HEM 1334 C 1 
HETATM 32 C C4D HEM . . . F 5 -7.433 38.859 -93.998 1 2 ? C4D HEM 1334 C 1 
HETATM 33 C CMD HEM . . . F 5 -5.894 37.448 -90.728 1 2 ? CMD HEM 1334 C 1 
HETATM 34 C CAD HEM . . . F 5 -6.106 40.464 -92.307 1 2 ? CAD HEM 1334 C 1 
HETATM 35 C CBD HEM . . . F 5 -7.137 41.198 -91.454 1 2 ? CBD HEM 1334 C 1 
HETATM 36 C CGD HEM . . . F 5 -7.79 42.298 -92.251 1 2 ? CGD HEM 1334 C 1 
HETATM 37 O O1D HEM . . . F 5 -9.021 42.207 -92.492 1 2 ? O1D HEM 1334 C 1 
HETATM 38 O O2D HEM . . . F 5 -7.09 43.27 -92.639 1 2 ? O2D HEM 1334 C 1 
HETATM 39 N NA HEM . . . F 5 -8.981 38.409 -96.547 1 2 ? NA HEM 1334 C 1 
HETATM 40 N NB HEM . . . F 5 -9.733 35.648 -97.185 1 2 ? NB HEM 1334 C 1 
HETATM 41 N NC HEM . . . F 5 -8.472 34.724 -94.773 1 2 ? NC HEM 1334 C 1 
HETATM 42 N ND HEM . . . F 5 -7.763 37.506 -94.044 1 2 ? ND HEM 1334 C 1 
HETATM 43 FE FE HEM . . . F 5 -8.716 36.565 -95.643 1 2 ? FE HEM 1334 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#