data_4ACA
#
_model_server_result.job_id            h1U6ZNkdm_LvP6onuAHTZg 
_model_server_result.datetime_utc      '2024-11-26 22:46:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4aca 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1474}' 
#
_entry.id    4ACA 
#
_exptl.entry_id    4ACA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4ACA 
_cell.length_a            146.86 
_cell.length_b            146.86 
_cell.length_c            297.83 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ACA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        151 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 1 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A 1 1 
B,E,F,G,H 2 1 
C,I,J,K,L,M,N,O,P,Q,R,S 3 1 
D 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 277 A GLY 263 1_555 A N CMH 278 A CMH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C CMH 278 A CMH 264 1_555 A N ILE 279 A ILE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C GLU 351 A GLU 337 1_555 A N CMH 352 A CMH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C CMH 352 A CMH 338 1_555 A N TYR 353 A TYR 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale5 A C TYR 353 A TYR 339 1_555 A N CMH 354 A CMH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 A C CMH 354 A CMH 340 1_555 A N ALA 355 A ALA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale7 A C ILE 384 A ILE 370 1_555 A N CMH 385 A CMH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale8 A C CMH 385 A CMH 371 1_555 A N GLY 386 A GLY 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale9 B C GLY 277 B GLY 263 1_555 B N CMH 278 B CMH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale10 B C CMH 278 B CMH 264 1_555 B N ILE 279 B ILE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale11 B C GLU 351 B GLU 337 1_555 B N CMH 352 B CMH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale12 B C CMH 352 B CMH 338 1_555 B N TYR 353 B TYR 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale13 B C TYR 353 B TYR 339 1_555 B N CMH 354 B CMH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale14 B C CMH 354 B CMH 340 1_555 B N ALA 355 B ALA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale15 B C ILE 384 B ILE 370 1_555 B N CMH 385 B CMH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale16 B C CMH 385 B CMH 371 1_555 B N GLY 386 B GLY 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale17 C C GLY 277 C GLY 263 1_555 C N CMH 278 C CMH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale18 C C CMH 278 C CMH 264 1_555 C N ILE 279 C ILE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale19 C C GLU 351 C GLU 337 1_555 C N CMH 352 C CMH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale20 C C CMH 352 C CMH 338 1_555 C N TYR 353 C TYR 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale21 C C TYR 353 C TYR 339 1_555 C N CMH 354 C CMH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale22 C C CMH 354 C CMH 340 1_555 C N ALA 355 C ALA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale23 C C ILE 384 C ILE 370 1_555 C N CMH 385 C CMH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale24 C C CMH 385 C CMH 371 1_555 C N GLY 386 C GLY 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale25 D C GLY 277 D GLY 263 1_555 D N CMH 278 D CMH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale26 D C CMH 278 D CMH 264 1_555 D N ILE 279 D ILE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale27 D C GLU 351 D GLU 337 1_555 D N CMH 352 D CMH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale28 D C CMH 352 D CMH 338 1_555 D N TYR 353 D TYR 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale29 D C TYR 353 D TYR 339 1_555 D N CMH 354 D CMH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale30 D C CMH 354 D CMH 340 1_555 D N ALA 355 D ALA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale31 D C ILE 384 D ILE 370 1_555 D N CMH 385 D CMH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale32 D C CMH 385 D CMH 371 1_555 D N GLY 386 D GLY 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 B O GLU 351 B GLU 337 1_555 B HG CMH 352 B CMH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? 
metalc ? metalc2 C O TYR 275 C TYR 261 1_555 C HG CMH 278 C CMH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? 
metalc ? metalc3 C O GLU 351 C GLU 337 1_555 C HG CMH 352 C CMH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                5GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 5GP doub 1 n n 
P O2P 5GP sing 2 n n 
P O3P 5GP sing 3 n n 
P O5' 5GP sing 4 n n 
O2P HOP2 5GP sing 5 n n 
O3P HOP3 5GP sing 6 n n 
O5' C5' 5GP sing 7 n n 
C5' C4' 5GP sing 8 n n 
C5' "H5'1" 5GP sing 9 n n 
C5' "H5'2" 5GP sing 10 n n 
C4' O4' 5GP sing 11 n n 
C4' C3' 5GP sing 12 n n 
C4' H4' 5GP sing 13 n n 
O4' C1' 5GP sing 14 n n 
C3' O3' 5GP sing 15 n n 
C3' C2' 5GP sing 16 n n 
C3' H3' 5GP sing 17 n n 
O3' HO3' 5GP sing 18 n n 
C2' O2' 5GP sing 19 n n 
C2' C1' 5GP sing 20 n n 
C2' H2' 5GP sing 21 n n 
O2' HO2' 5GP sing 22 n n 
C1' N9 5GP sing 23 n n 
C1' H1' 5GP sing 24 n n 
N9 C8 5GP sing 25 n y 
N9 C4 5GP sing 26 n y 
C8 N7 5GP doub 27 n y 
C8 H8 5GP sing 28 n n 
N7 C5 5GP sing 29 n y 
C5 C6 5GP sing 30 n n 
C5 C4 5GP doub 31 n y 
C6 O6 5GP doub 32 n n 
C6 N1 5GP sing 33 n n 
N1 C2 5GP sing 34 n n 
N1 HN1 5GP sing 35 n n 
C2 N2 5GP sing 36 n n 
C2 N3 5GP doub 37 n n 
N2 HN21 5GP sing 38 n n 
N2 HN22 5GP sing 39 n n 
N3 C4 5GP sing 40 n n 
#
_atom_sites.entry_id                     4ACA 
_atom_sites.fract_transf_matrix[1][1]    0.006809 
_atom_sites.fract_transf_matrix[1][2]    0.003931 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007863 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003358 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 B 1 1471 1471 SO4 SO4 . 
F 2 SO4 B 1 1472 1472 SO4 SO4 . 
G 3 DXC B 1 1473 1473 DXC DXC . 
H 4 5GP B 1 1474 1474 5GP 5GP . 
I 2 SO4 C 1 1471 1471 SO4 SO4 . 
J 2 SO4 C 1 1472 1472 SO4 SO4 . 
K 2 SO4 C 1 1473 1473 SO4 SO4 . 
L 2 SO4 C 1 1474 1474 SO4 SO4 . 
M 3 DXC C 1 1475 1475 DXC DXC . 
N 3 DXC C 1 1476 1476 DXC DXC . 
O 3 DXC C 1 1477 1477 DXC DXC . 
P 3 DXC C 1 1478 1478 DXC DXC . 
Q 3 DXC C 1 1479 1479 DXC DXC . 
R 3 DXC C 1 1480 1480 DXC DXC . 
S 2 SO4 C 1 1481 1481 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 5GP . . . H 4 32.216 -21.821 -19.129 1 248.87 ? P 5GP 1474 B 1 
HETATM 2 O O1P 5GP . . . H 4 31.182 -21.426 -20.157 1 243.83 ? O1P 5GP 1474 B 1 
HETATM 3 O O2P 5GP . . . H 4 32.854 -20.701 -18.35 1 237.37 ? O2P 5GP 1474 B 1 
HETATM 4 O O3P 5GP . . . H 4 33.168 -22.901 -19.584 1 238.03 ? O3P 5GP 1474 B 1 
HETATM 5 O O5' 5GP . . . H 4 31.345 -22.509 -17.997 1 237.65 ? O5' 5GP 1474 B 1 
HETATM 6 C C5' 5GP . . . H 4 30.352 -21.764 -17.313 1 233.51 ? C5' 5GP 1474 B 1 
HETATM 7 C C4' 5GP . . . H 4 29.457 -22.659 -16.501 1 227.75 ? C4' 5GP 1474 B 1 
HETATM 8 O O4' 5GP . . . H 4 29.936 -22.687 -15.128 1 236.49 ? O4' 5GP 1474 B 1 
HETATM 9 C C3' 5GP . . . H 4 28.002 -22.207 -16.434 1 213.13 ? C3' 5GP 1474 B 1 
HETATM 10 O O3' 5GP . . . H 4 27.159 -23.355 -16.365 1 204.44 ? O3' 5GP 1474 B 1 
HETATM 11 C C2' 5GP . . . H 4 27.948 -21.456 -15.109 1 227.16 ? C2' 5GP 1474 B 1 
HETATM 12 O O2' 5GP . . . H 4 26.658 -21.385 -14.544 1 224.44 ? O2' 5GP 1474 B 1 
HETATM 13 C C1' 5GP . . . H 4 28.896 -22.291 -14.255 1 241.68 ? C1' 5GP 1474 B 1 
HETATM 14 N N9 5GP . . . H 4 29.51 -21.579 -13.128 1 265.76 ? N9 5GP 1474 B 1 
HETATM 15 C C8 5GP . . . H 4 30.415 -20.592 -13.22 1 276.71 ? C8 5GP 1474 B 1 
HETATM 16 N N7 5GP . . . H 4 30.781 -20.203 -11.977 1 275.08 ? N7 5GP 1474 B 1 
HETATM 17 C C5 5GP . . . H 4 30.103 -20.969 -11.098 1 276.28 ? C5 5GP 1474 B 1 
HETATM 18 C C6 5GP . . . H 4 30.074 -21.021 -9.711 1 274.94 ? C6 5GP 1474 B 1 
HETATM 19 O O6 5GP . . . H 4 30.778 -20.244 -9.034 1 273.8 ? O6 5GP 1474 B 1 
HETATM 20 N N1 5GP . . . H 4 29.284 -21.908 -9.102 1 284.03 ? N1 5GP 1474 B 1 
HETATM 21 C C2 5GP . . . H 4 28.52 -22.751 -9.813 1 287.6 ? C2 5GP 1474 B 1 
HETATM 22 N N2 5GP . . . H 4 27.736 -23.638 -9.155 1 292.2 ? N2 5GP 1474 B 1 
HETATM 23 N N3 5GP . . . H 4 28.521 -22.73 -11.169 1 273.76 ? N3 5GP 1474 B 1 
HETATM 24 C C4 5GP . . . H 4 29.313 -21.845 -11.828 1 273.75 ? C4 5GP 1474 B 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#