data_4ACA # _model_server_result.job_id AOk9315Yfys1WqeUmOcbjA _model_server_result.datetime_utc '2024-11-23 05:43:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4aca # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1475}' # _entry.id 4ACA # _exptl.entry_id 4ACA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.572 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ACA _cell.length_a 146.86 _cell.length_b 146.86 _cell.length_c 297.83 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ACA _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 1 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A 1 1 B,E,F,G,H 2 1 C,I,J,K,L,M,N,O,P,Q,R,S 3 1 D 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 277 A GLY 263 1_555 A N CMH 278 A CMH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C CMH 278 A CMH 264 1_555 A N ILE 279 A ILE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C GLU 351 A GLU 337 1_555 A N CMH 352 A CMH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C CMH 352 A CMH 338 1_555 A N TYR 353 A TYR 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 A C TYR 353 A TYR 339 1_555 A N CMH 354 A CMH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C CMH 354 A CMH 340 1_555 A N ALA 355 A ALA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C ILE 384 A ILE 370 1_555 A N CMH 385 A CMH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 A C CMH 385 A CMH 371 1_555 A N GLY 386 A GLY 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale9 B C GLY 277 B GLY 263 1_555 B N CMH 278 B CMH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 B C CMH 278 B CMH 264 1_555 B N ILE 279 B ILE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 B C GLU 351 B GLU 337 1_555 B N CMH 352 B CMH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 B C CMH 352 B CMH 338 1_555 B N TYR 353 B TYR 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale13 B C TYR 353 B TYR 339 1_555 B N CMH 354 B CMH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 B C CMH 354 B CMH 340 1_555 B N ALA 355 B ALA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale15 B C ILE 384 B ILE 370 1_555 B N CMH 385 B CMH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 B C CMH 385 B CMH 371 1_555 B N GLY 386 B GLY 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 C C GLY 277 C GLY 263 1_555 C N CMH 278 C CMH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 C C CMH 278 C CMH 264 1_555 C N ILE 279 C ILE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 C C GLU 351 C GLU 337 1_555 C N CMH 352 C CMH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 C C CMH 352 C CMH 338 1_555 C N TYR 353 C TYR 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale21 C C TYR 353 C TYR 339 1_555 C N CMH 354 C CMH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale22 C C CMH 354 C CMH 340 1_555 C N ALA 355 C ALA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale23 C C ILE 384 C ILE 370 1_555 C N CMH 385 C CMH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale24 C C CMH 385 C CMH 371 1_555 C N GLY 386 C GLY 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale25 D C GLY 277 D GLY 263 1_555 D N CMH 278 D CMH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale26 D C CMH 278 D CMH 264 1_555 D N ILE 279 D ILE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale27 D C GLU 351 D GLU 337 1_555 D N CMH 352 D CMH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale28 D C CMH 352 D CMH 338 1_555 D N TYR 353 D TYR 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale29 D C TYR 353 D TYR 339 1_555 D N CMH 354 D CMH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale30 D C CMH 354 D CMH 340 1_555 D N ALA 355 D ALA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale31 D C ILE 384 D ILE 370 1_555 D N CMH 385 D CMH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale32 D C CMH 385 D CMH 371 1_555 D N GLY 386 D GLY 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 B O GLU 351 B GLU 337 1_555 B HG CMH 352 B CMH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc2 C O TYR 275 C TYR 261 1_555 C HG CMH 278 C CMH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? metalc ? metalc3 C O GLU 351 C GLU 337 1_555 C HG CMH 352 C CMH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? # _chem_comp.formula 'C24 H40 O4' _chem_comp.formula_weight 392.572 _chem_comp.id DXC _chem_comp.mon_nstd_flag . _chem_comp.name '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DEOXYCHOLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DXC sing 127 n n C1 C6 DXC sing 128 n n C1 O2 DXC sing 129 n n C1 H1 DXC sing 130 n n C2 C3 DXC sing 131 n n C2 H22 DXC sing 132 n n C2 H21 DXC sing 133 n n C3 C4 DXC sing 134 n n C3 C7 DXC sing 135 n n C3 H3 DXC sing 136 n n C4 C5 DXC sing 137 n n C4 C10 DXC sing 138 n n C4 C18 DXC sing 139 n n C5 C6 DXC sing 140 n n C5 H52 DXC sing 141 n n C5 H51 DXC sing 142 n n C6 H62 DXC sing 143 n n C6 H61 DXC sing 144 n n C7 C8 DXC sing 145 n n C7 H72 DXC sing 146 n n C7 H71 DXC sing 147 n n C8 C9 DXC sing 148 n n C8 H82 DXC sing 149 n n C8 H81 DXC sing 150 n n C9 C10 DXC sing 151 n n C9 C11 DXC sing 152 n n C9 H9 DXC sing 153 n n C10 C14 DXC sing 154 n n C10 H10 DXC sing 155 n n C11 C12 DXC sing 156 n n C11 C15 DXC sing 157 n n C11 H11 DXC sing 158 n n C12 C13 DXC sing 159 n n C12 C17 DXC sing 160 n n C12 C20 DXC sing 161 n n C13 C14 DXC sing 162 n n C13 O1 DXC sing 163 n n C13 H13 DXC sing 164 n n C14 H142 DXC sing 165 n n C14 H141 DXC sing 166 n n C15 C16 DXC sing 167 n n C15 H152 DXC sing 168 n n C15 H151 DXC sing 169 n n C16 C17 DXC sing 170 n n C16 H162 DXC sing 171 n n C16 H161 DXC sing 172 n n C17 C19 DXC sing 173 n n C17 H17 DXC sing 174 n n C18 H183 DXC sing 175 n n C18 H182 DXC sing 176 n n C18 H181 DXC sing 177 n n C19 C21 DXC sing 178 n n C19 C24 DXC sing 179 n n C19 H19 DXC sing 180 n n O1 H1O1 DXC sing 181 n n O2 H2 DXC sing 182 n n C20 H203 DXC sing 183 n n C20 H202 DXC sing 184 n n C20 H201 DXC sing 185 n n C21 C22 DXC sing 186 n n C21 H212 DXC sing 187 n n C21 H211 DXC sing 188 n n C22 C23 DXC sing 189 n n C22 H222 DXC sing 190 n n C22 H221 DXC sing 191 n n C23 O3 DXC doub 192 n n C23 O4 DXC sing 193 n n O4 HO4 DXC sing 194 n n C24 H243 DXC sing 195 n n C24 H242 DXC sing 196 n n C24 H241 DXC sing 197 n n # _atom_sites.entry_id 4ACA _atom_sites.fract_transf_matrix[1][1] 0.006809 _atom_sites.fract_transf_matrix[1][2] 0.003931 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 B 1 1471 1471 SO4 SO4 . F 2 SO4 B 1 1472 1472 SO4 SO4 . G 3 DXC B 1 1473 1473 DXC DXC . H 4 5GP B 1 1474 1474 5GP 5GP . I 2 SO4 C 1 1471 1471 SO4 SO4 . J 2 SO4 C 1 1472 1472 SO4 SO4 . K 2 SO4 C 1 1473 1473 SO4 SO4 . L 2 SO4 C 1 1474 1474 SO4 SO4 . M 3 DXC C 1 1475 1475 DXC DXC . N 3 DXC C 1 1476 1476 DXC DXC . O 3 DXC C 1 1477 1477 DXC DXC . P 3 DXC C 1 1478 1478 DXC DXC . Q 3 DXC C 1 1479 1479 DXC DXC . R 3 DXC C 1 1480 1480 DXC DXC . S 2 SO4 C 1 1481 1481 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DXC . . . M 3 86.153 -46.503 1.178 1 85.92 ? C1 DXC 1475 C 1 HETATM 2 C C2 DXC . . . M 3 86.407 -46.904 2.579 1 66.42 ? C2 DXC 1475 C 1 HETATM 3 C C3 DXC . . . M 3 86.999 -48.288 2.568 1 65.79 ? C3 DXC 1475 C 1 HETATM 4 C C4 DXC . . . M 3 86.02 -49.276 1.96 1 83.8 ? C4 DXC 1475 C 1 HETATM 5 C C5 DXC . . . M 3 85.648 -48.808 0.563 1 84.21 ? C5 DXC 1475 C 1 HETATM 6 C C6 DXC . . . M 3 85.113 -47.408 0.618 1 70.96 ? C6 DXC 1475 C 1 HETATM 7 C C7 DXC . . . M 3 87.446 -48.745 3.957 1 79.75 ? C7 DXC 1475 C 1 HETATM 8 C C8 DXC . . . M 3 86.221 -48.811 4.86 1 82.39 ? C8 DXC 1475 C 1 HETATM 9 C C9 DXC . . . M 3 85.284 -49.852 4.29 1 65.41 ? C9 DXC 1475 C 1 HETATM 10 C C10 DXC . . . M 3 84.83 -49.498 2.892 1 69.71 ? C10 DXC 1475 C 1 HETATM 11 C C11 DXC . . . M 3 83.992 -49.971 5.15 1 77.06 ? C11 DXC 1475 C 1 HETATM 12 C C12 DXC . . . M 3 82.994 -50.995 4.702 1 67.16 ? C12 DXC 1475 C 1 HETATM 13 C C13 DXC . . . M 3 82.584 -50.537 3.369 1 82.37 ? C13 DXC 1475 C 1 HETATM 14 C C14 DXC . . . M 3 83.776 -50.517 2.403 1 102.43 ? C14 DXC 1475 C 1 HETATM 15 C C15 DXC . . . M 3 84.146 -50.279 6.624 1 64.61 ? C15 DXC 1475 C 1 HETATM 16 C C16 DXC . . . M 3 82.701 -50.544 7.037 1 68.24 ? C16 DXC 1475 C 1 HETATM 17 C C17 DXC . . . M 3 81.937 -50.899 5.776 1 84.56 ? C17 DXC 1475 C 1 HETATM 18 C C18 DXC . . . M 3 86.84 -50.495 1.715 1 76.53 ? C18 DXC 1475 C 1 HETATM 19 C C19 DXC . . . M 3 80.968 -52.087 5.975 1 68.15 ? C19 DXC 1475 C 1 HETATM 20 O O1 DXC . . . M 3 82.096 -49.254 3.564 1 109.56 ? O1 DXC 1475 C 1 HETATM 21 O O2 DXC . . . M 3 85.705 -45.193 1.147 1 83.85 ? O2 DXC 1475 C 1 HETATM 22 C C20 DXC . . . M 3 83.503 -52.386 4.625 1 66.66 ? C20 DXC 1475 C 1 HETATM 23 C C21 DXC . . . M 3 80.18 -51.939 7.269 1 79.46 ? C21 DXC 1475 C 1 HETATM 24 C C22 DXC . . . M 3 79.218 -53.1 7.472 1 119.94 ? C22 DXC 1475 C 1 HETATM 25 C C23 DXC . . . M 3 78.145 -52.735 8.446 1 132.75 ? C23 DXC 1475 C 1 HETATM 26 O O3 DXC . . . M 3 78.423 -52.443 9.64 1 103.44 ? O3 DXC 1475 C 1 HETATM 27 O O4 DXC . . . M 3 76.94 -52.731 8.069 1 144.37 ? O4 DXC 1475 C 1 HETATM 28 C C24 DXC . . . M 3 79.961 -52.163 4.884 1 109.32 ? C24 DXC 1475 C 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 28 #