data_4ACH
#
_model_server_result.job_id            Ja7mvAQzQQM944e2PZosSA 
_model_server_result.datetime_utc      '2024-11-26 10:08:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ach 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1386}' 
#
_entry.id    4ACH 
#
_exptl.entry_id    4ACH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              448.539 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-AMINO-N-(3-METHOXYPROPYL)-6-{4-[(4-METHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}PYRAZINE-2-CARBOXAMIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ACH 
_cell.length_a            83.949 
_cell.length_b            85.167 
_cell.length_c            178.389 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ACH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C20 H28 N6 O4 S' 
_chem_comp.formula_weight    448.539 
_chem_comp.id                KDI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-AMINO-N-(3-METHOXYPROPYL)-6-{4-[(4-METHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}PYRAZINE-2-CARBOXAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N2 KDI sing 173 n n 
N2 C3 KDI sing 174 n n 
N2 C4 KDI sing 175 n n 
C3 C6 KDI sing 176 n n 
C4 C5 KDI sing 177 n n 
C5 N6 KDI sing 178 n n 
N6 S7 KDI sing 179 n n 
N6 C6 KDI sing 180 n n 
S7 O8 KDI doub 181 n n 
S7 O9 KDI doub 182 n n 
S7 C10 KDI sing 183 n n 
C10 C11 KDI sing 184 n y 
C10 C15 KDI doub 185 n y 
C11 C12 KDI doub 186 n y 
C12 C13 KDI sing 187 n y 
C13 C14 KDI doub 188 n y 
C13 C16 KDI sing 189 n n 
C14 C15 KDI sing 190 n y 
C16 C17 KDI sing 191 n y 
C16 N21 KDI doub 192 n y 
C17 N18 KDI doub 193 n y 
N18 C19 KDI sing 194 n y 
C19 C20 KDI doub 195 n y 
C19 N31 KDI sing 196 n n 
C20 N21 KDI sing 197 n y 
C20 C22 KDI sing 198 n n 
C22 O23 KDI doub 199 n n 
C22 N24 KDI sing 200 n n 
N24 C25 KDI sing 201 n n 
C25 C30 KDI sing 202 n n 
C27 O29 KDI sing 203 n n 
C30 C28 KDI sing 204 n n 
C28 O29 KDI sing 205 n n 
C1 H11C KDI sing 206 n n 
C1 H12C KDI sing 207 n n 
C1 H13C KDI sing 208 n n 
C3 H31C KDI sing 209 n n 
C3 H32C KDI sing 210 n n 
C4 H41C KDI sing 211 n n 
C4 H42C KDI sing 212 n n 
C6 H61C KDI sing 213 n n 
C6 H62C KDI sing 214 n n 
C5 H51C KDI sing 215 n n 
C5 H52C KDI sing 216 n n 
C11 H11 KDI sing 217 n n 
C15 H15 KDI sing 218 n n 
C12 H12 KDI sing 219 n n 
C14 H14 KDI sing 220 n n 
C17 H17 KDI sing 221 n n 
N31 H311 KDI sing 222 n n 
N31 H312 KDI sing 223 n n 
N24 H24 KDI sing 224 n n 
C25 H251 KDI sing 225 n n 
C25 H252 KDI sing 226 n n 
C30 H301 KDI sing 227 n n 
C30 H302 KDI sing 228 n n 
C27 H271 KDI sing 229 n n 
C27 H272 KDI sing 230 n n 
C27 H273 KDI sing 231 n n 
C28 H281 KDI sing 232 n n 
C28 H282 KDI sing 233 n n 
#
_atom_sites.entry_id                     4ACH 
_atom_sites.fract_transf_matrix[1][1]    0.011912 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011742 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005606 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 KDI A 1 1386 1386 KDI KDI . 
D 2 KDI B 1 1386 1386 KDI KDI . 
E 3 HOH A 1 2001 2001 HOH HOH . 
E 3 HOH A 2 2002 2002 HOH HOH . 
E 3 HOH A 3 2003 2003 HOH HOH . 
E 3 HOH A 4 2004 2004 HOH HOH . 
E 3 HOH A 5 2005 2005 HOH HOH . 
E 3 HOH A 6 2006 2006 HOH HOH . 
E 3 HOH A 7 2007 2007 HOH HOH . 
E 3 HOH A 8 2008 2008 HOH HOH . 
E 3 HOH A 9 2009 2009 HOH HOH . 
E 3 HOH A 10 2010 2010 HOH HOH . 
E 3 HOH A 11 2011 2011 HOH HOH . 
E 3 HOH A 12 2012 2012 HOH HOH . 
E 3 HOH A 13 2013 2013 HOH HOH . 
E 3 HOH A 14 2014 2014 HOH HOH . 
E 3 HOH A 15 2015 2015 HOH HOH . 
E 3 HOH A 16 2016 2016 HOH HOH . 
E 3 HOH A 17 2017 2017 HOH HOH . 
E 3 HOH A 18 2018 2018 HOH HOH . 
E 3 HOH A 19 2019 2019 HOH HOH . 
E 3 HOH A 20 2020 2020 HOH HOH . 
E 3 HOH A 21 2021 2021 HOH HOH . 
E 3 HOH A 22 2022 2022 HOH HOH . 
E 3 HOH A 23 2023 2023 HOH HOH . 
E 3 HOH A 24 2024 2024 HOH HOH . 
E 3 HOH A 25 2025 2025 HOH HOH . 
E 3 HOH A 26 2026 2026 HOH HOH . 
E 3 HOH A 27 2027 2027 HOH HOH . 
E 3 HOH A 28 2028 2028 HOH HOH . 
E 3 HOH A 29 2029 2029 HOH HOH . 
E 3 HOH A 30 2030 2030 HOH HOH . 
E 3 HOH A 31 2031 2031 HOH HOH . 
E 3 HOH A 32 2032 2032 HOH HOH . 
E 3 HOH A 33 2033 2033 HOH HOH . 
E 3 HOH A 34 2034 2034 HOH HOH . 
E 3 HOH A 35 2035 2035 HOH HOH . 
E 3 HOH A 36 2036 2036 HOH HOH . 
E 3 HOH A 37 2037 2037 HOH HOH . 
E 3 HOH A 38 2038 2038 HOH HOH . 
E 3 HOH A 39 2039 2039 HOH HOH . 
E 3 HOH A 40 2040 2040 HOH HOH . 
E 3 HOH A 41 2041 2041 HOH HOH . 
E 3 HOH A 42 2042 2042 HOH HOH . 
E 3 HOH A 43 2043 2043 HOH HOH . 
E 3 HOH A 44 2044 2044 HOH HOH . 
E 3 HOH A 45 2045 2045 HOH HOH . 
E 3 HOH A 46 2046 2046 HOH HOH . 
E 3 HOH A 47 2047 2047 HOH HOH . 
E 3 HOH A 48 2048 2048 HOH HOH . 
E 3 HOH A 49 2049 2049 HOH HOH . 
E 3 HOH A 50 2050 2050 HOH HOH . 
E 3 HOH A 51 2051 2051 HOH HOH . 
E 3 HOH A 52 2052 2052 HOH HOH . 
E 3 HOH A 53 2053 2053 HOH HOH . 
E 3 HOH A 54 2054 2054 HOH HOH . 
E 3 HOH A 55 2055 2055 HOH HOH . 
E 3 HOH A 56 2056 2056 HOH HOH . 
E 3 HOH A 57 2057 2057 HOH HOH . 
E 3 HOH A 58 2058 2058 HOH HOH . 
E 3 HOH A 59 2059 2059 HOH HOH . 
E 3 HOH A 60 2060 2060 HOH HOH . 
E 3 HOH A 61 2061 2061 HOH HOH . 
E 3 HOH A 62 2062 2062 HOH HOH . 
E 3 HOH A 63 2063 2063 HOH HOH . 
E 3 HOH A 64 2064 2064 HOH HOH . 
E 3 HOH A 65 2065 2065 HOH HOH . 
F 3 HOH B 1 2001 2001 HOH HOH . 
F 3 HOH B 2 2002 2002 HOH HOH . 
F 3 HOH B 3 2003 2003 HOH HOH . 
F 3 HOH B 4 2004 2004 HOH HOH . 
F 3 HOH B 5 2005 2005 HOH HOH . 
F 3 HOH B 6 2006 2006 HOH HOH . 
F 3 HOH B 7 2007 2007 HOH HOH . 
F 3 HOH B 8 2008 2008 HOH HOH . 
F 3 HOH B 9 2009 2009 HOH HOH . 
F 3 HOH B 10 2010 2010 HOH HOH . 
F 3 HOH B 11 2011 2011 HOH HOH . 
F 3 HOH B 12 2012 2012 HOH HOH . 
F 3 HOH B 13 2013 2013 HOH HOH . 
F 3 HOH B 14 2014 2014 HOH HOH . 
F 3 HOH B 15 2015 2015 HOH HOH . 
F 3 HOH B 16 2016 2016 HOH HOH . 
F 3 HOH B 17 2017 2017 HOH HOH . 
F 3 HOH B 18 2018 2018 HOH HOH . 
F 3 HOH B 19 2019 2019 HOH HOH . 
F 3 HOH B 20 2020 2020 HOH HOH . 
F 3 HOH B 21 2021 2021 HOH HOH . 
F 3 HOH B 22 2022 2022 HOH HOH . 
F 3 HOH B 23 2023 2023 HOH HOH . 
F 3 HOH B 24 2024 2024 HOH HOH . 
F 3 HOH B 25 2025 2025 HOH HOH . 
F 3 HOH B 26 2026 2026 HOH HOH . 
F 3 HOH B 27 2027 2027 HOH HOH . 
F 3 HOH B 28 2028 2028 HOH HOH . 
F 3 HOH B 29 2029 2029 HOH HOH . 
F 3 HOH B 30 2030 2030 HOH HOH . 
F 3 HOH B 31 2031 2031 HOH HOH . 
F 3 HOH B 32 2032 2032 HOH HOH . 
F 3 HOH B 33 2033 2033 HOH HOH . 
F 3 HOH B 34 2034 2034 HOH HOH . 
F 3 HOH B 35 2035 2035 HOH HOH . 
F 3 HOH B 36 2036 2036 HOH HOH . 
F 3 HOH B 37 2037 2037 HOH HOH . 
F 3 HOH B 38 2038 2038 HOH HOH . 
F 3 HOH B 39 2039 2039 HOH HOH . 
F 3 HOH B 40 2040 2040 HOH HOH . 
F 3 HOH B 41 2041 2041 HOH HOH . 
F 3 HOH B 42 2042 2042 HOH HOH . 
F 3 HOH B 43 2043 2043 HOH HOH . 
F 3 HOH B 44 2044 2044 HOH HOH . 
F 3 HOH B 45 2045 2045 HOH HOH . 
F 3 HOH B 46 2046 2046 HOH HOH . 
F 3 HOH B 47 2047 2047 HOH HOH . 
F 3 HOH B 48 2048 2048 HOH HOH . 
F 3 HOH B 49 2049 2049 HOH HOH . 
F 3 HOH B 50 2050 2050 HOH HOH . 
F 3 HOH B 51 2051 2051 HOH HOH . 
F 3 HOH B 52 2052 2052 HOH HOH . 
F 3 HOH B 53 2053 2053 HOH HOH . 
F 3 HOH B 54 2054 2054 HOH HOH . 
F 3 HOH B 55 2055 2055 HOH HOH . 
F 3 HOH B 56 2056 2056 HOH HOH . 
F 3 HOH B 57 2057 2057 HOH HOH . 
F 3 HOH B 58 2058 2058 HOH HOH . 
F 3 HOH B 59 2059 2059 HOH HOH . 
F 3 HOH B 60 2060 2060 HOH HOH . 
F 3 HOH B 61 2061 2061 HOH HOH . 
F 3 HOH B 62 2062 2062 HOH HOH . 
F 3 HOH B 63 2063 2063 HOH HOH . 
F 3 HOH B 64 2064 2064 HOH HOH . 
F 3 HOH B 65 2065 2065 HOH HOH . 
F 3 HOH B 66 2066 2066 HOH HOH . 
F 3 HOH B 67 2067 2067 HOH HOH . 
F 3 HOH B 68 2068 2068 HOH HOH . 
F 3 HOH B 69 2069 2069 HOH HOH . 
F 3 HOH B 70 2070 2070 HOH HOH . 
F 3 HOH B 71 2071 2071 HOH HOH . 
F 3 HOH B 72 2072 2072 HOH HOH . 
F 3 HOH B 73 2073 2073 HOH HOH . 
F 3 HOH B 74 2074 2074 HOH HOH . 
F 3 HOH B 75 2075 2075 HOH HOH . 
F 3 HOH B 76 2076 2076 HOH HOH . 
F 3 HOH B 77 2077 2077 HOH HOH . 
F 3 HOH B 78 2078 2078 HOH HOH . 
F 3 HOH B 79 2079 2079 HOH HOH . 
F 3 HOH B 80 2080 2080 HOH HOH . 
F 3 HOH B 81 2081 2081 HOH HOH . 
F 3 HOH B 82 2082 2082 HOH HOH . 
F 3 HOH B 83 2083 2083 HOH HOH . 
F 3 HOH B 84 2084 2084 HOH HOH . 
F 3 HOH B 85 2085 2085 HOH HOH . 
F 3 HOH B 86 2086 2086 HOH HOH . 
F 3 HOH B 87 2087 2087 HOH HOH . 
F 3 HOH B 88 2088 2088 HOH HOH . 
F 3 HOH B 89 2089 2089 HOH HOH . 
F 3 HOH B 90 2090 2090 HOH HOH . 
F 3 HOH B 91 2091 2091 HOH HOH . 
F 3 HOH B 92 2092 2092 HOH HOH . 
F 3 HOH B 93 2093 2093 HOH HOH . 
F 3 HOH B 94 2094 2094 HOH HOH . 
F 3 HOH B 95 2095 2095 HOH HOH . 
F 3 HOH B 96 2096 2096 HOH HOH . 
F 3 HOH B 97 2097 2097 HOH HOH . 
F 3 HOH B 98 2098 2098 HOH HOH . 
F 3 HOH B 99 2099 2099 HOH HOH . 
F 3 HOH B 100 2100 2100 HOH HOH . 
F 3 HOH B 101 2101 2101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 KDI . . . D 2 28.04 67.493 78.115 1 108.81 ? C1 KDI 1386 B 1 
HETATM 2 N N2 KDI . . . D 2 28.185 66.032 78.04 1 108.13 ? N2 KDI 1386 B 1 
HETATM 3 C C3 KDI . . . D 2 28.212 65.424 79.38 1 108.81 ? C3 KDI 1386 B 1 
HETATM 4 C C4 KDI . . . D 2 27.119 65.443 77.216 1 106.95 ? C4 KDI 1386 B 1 
HETATM 5 C C5 KDI . . . D 2 27.368 63.938 76.979 1 106.68 ? C5 KDI 1386 B 1 
HETATM 6 N N6 KDI . . . D 2 27.91 63.234 78.18 1 106.79 ? N6 KDI 1386 B 1 
HETATM 7 S S7 KDI . . . D 2 27.645 61.594 78.368 1 105.3 ? S7 KDI 1386 B 1 
HETATM 8 O O8 KDI . . . D 2 27.544 61.028 77.069 1 101.87 ? O8 KDI 1386 B 1 
HETATM 9 O O9 KDI . . . D 2 28.563 61.105 79.353 1 107.78 ? O9 KDI 1386 B 1 
HETATM 10 C C10 KDI . . . D 2 26.05 61.497 79.142 1 106.94 ? C10 KDI 1386 B 1 
HETATM 11 C C11 KDI . . . D 2 24.865 61.696 78.414 1 107.29 ? C11 KDI 1386 B 1 
HETATM 12 C C12 KDI . . . D 2 23.623 61.657 79.047 1 106.73 ? C12 KDI 1386 B 1 
HETATM 13 C C13 KDI . . . D 2 23.57 61.457 80.435 1 106.95 ? C13 KDI 1386 B 1 
HETATM 14 C C14 KDI . . . D 2 24.76 61.241 81.155 1 106.23 ? C14 KDI 1386 B 1 
HETATM 15 C C15 KDI . . . D 2 25.985 61.286 80.52 1 106.59 ? C15 KDI 1386 B 1 
HETATM 16 C C16 KDI . . . D 2 22.281 61.385 81.183 1 107.77 ? C16 KDI 1386 B 1 
HETATM 17 C C17 KDI . . . D 2 22.055 62.262 82.267 1 106.74 ? C17 KDI 1386 B 1 
HETATM 18 N N18 KDI . . . D 2 20.935 62.158 82.969 1 106.31 ? N18 KDI 1386 B 1 
HETATM 19 C C19 KDI . . . D 2 20.025 61.21 82.673 1 107.17 ? C19 KDI 1386 B 1 
HETATM 20 C C20 KDI . . . D 2 20.235 60.303 81.612 1 104.75 ? C20 KDI 1386 B 1 
HETATM 21 N N21 KDI . . . D 2 21.382 60.423 80.917 1 107.77 ? N21 KDI 1386 B 1 
HETATM 22 C C22 KDI . . . D 2 19.237 59.252 81.255 1 98.44 ? C22 KDI 1386 B 1 
HETATM 23 O O23 KDI . . . D 2 18.501 58.743 82.092 1 95.5 ? O23 KDI 1386 B 1 
HETATM 24 N N24 KDI . . . D 2 19.168 58.918 79.944 1 95.11 ? N24 KDI 1386 B 1 
HETATM 25 C C25 KDI . . . D 2 18.316 57.893 79.322 1 89.9 ? C25 KDI 1386 B 1 
HETATM 26 C C27 KDI . . . D 2 22.603 57.786 79.009 1 74.22 ? C27 KDI 1386 B 1 
HETATM 27 C C30 KDI . . . D 2 19.198 56.914 78.526 1 85.28 ? C30 KDI 1386 B 1 
HETATM 28 N N31 KDI . . . D 2 18.881 61.158 83.443 1 109.04 ? N31 KDI 1386 B 1 
HETATM 29 C C6 KDI . . . D 2 28.68 63.965 79.231 1 108.28 ? C6 KDI 1386 B 1 
HETATM 30 C C28 KDI . . . D 2 20.429 57.575 77.869 1 81.94 ? C28 KDI 1386 B 1 
HETATM 31 O O29 KDI . . . D 2 21.636 56.948 78.353 1 78.59 ? O29 KDI 1386 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#