data_4AD0 # _model_server_result.job_id rnYZHwdK9UcW_J1vzf3l2A _model_server_result.datetime_utc '2024-11-13 04:40:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ad0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":500}' # _entry.id 4AD0 # _exptl.entry_id 4AD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.334 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.08 _cell.angle_gamma 90 _cell.entry_id 4AD0 _cell.length_a 65.993 _cell.length_b 168.428 _cell.length_c 72.433 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C11 H26 N2 O6' _chem_comp.formula_weight 282.334 _chem_comp.id B3P _chem_comp.mon_nstd_flag . _chem_comp.name 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 B3P sing 70 n n C1 C3 B3P sing 71 n n C1 H11 B3P sing 72 n n C1 H12 B3P sing 73 n n C2 N2 B3P sing 74 n n C2 H21 B3P sing 75 n n C2 H22 B3P sing 76 n n C3 N1 B3P sing 77 n n C3 H31 B3P sing 78 n n C3 H32 B3P sing 79 n n N1 C4 B3P sing 80 n n N1 HN1 B3P sing 81 n n C4 C5 B3P sing 82 n n C4 C6 B3P sing 83 n n C4 C7 B3P sing 84 n n C5 O4 B3P sing 85 n n C5 H51 B3P sing 86 n n C5 H52 B3P sing 87 n n C6 O5 B3P sing 88 n n C6 H61 B3P sing 89 n n C6 H62 B3P sing 90 n n C7 O6 B3P sing 91 n n C7 H71 B3P sing 92 n n C7 H72 B3P sing 93 n n N2 C8 B3P sing 94 n n N2 HN2 B3P sing 95 n n C8 C9 B3P sing 96 n n C8 C10 B3P sing 97 n n C8 C11 B3P sing 98 n n C9 O1 B3P sing 99 n n C9 H91 B3P sing 100 n n C9 H92 B3P sing 101 n n C10 O2 B3P sing 102 n n C10 H101 B3P sing 103 n n C10 H102 B3P sing 104 n n C11 O3 B3P sing 105 n n C11 H111 B3P sing 106 n n C11 H112 B3P sing 107 n n O1 HO1 B3P sing 108 n n O2 HO2 B3P sing 109 n n O3 HO3 B3P sing 110 n n O4 HO4 B3P sing 111 n n O5 HO5 B3P sing 112 n n O6 HO6 B3P sing 113 n n # _atom_sites.entry_id 4AD0 _atom_sites.fract_transf_matrix[1][1] 0.015153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007748 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 B3P A 1 500 500 B3P B3P . F 3 GOL A 1 1378 1378 GOL GOL . G 2 B3P B 1 500 500 B3P B3P . H 3 GOL B 1 1379 1379 GOL GOL . I 2 B3P C 1 500 500 B3P B3P . J 3 GOL C 1 1379 1379 GOL GOL . K 2 B3P D 1 500 500 B3P B3P . L 3 GOL D 1 1378 1378 GOL GOL . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . M 4 HOH A 5 2005 2005 HOH HOH . M 4 HOH A 6 2006 2006 HOH HOH . M 4 HOH A 7 2007 2007 HOH HOH . M 4 HOH A 8 2008 2008 HOH HOH . M 4 HOH A 9 2009 2009 HOH HOH . M 4 HOH A 10 2010 2010 HOH HOH . M 4 HOH A 11 2011 2011 HOH HOH . M 4 HOH A 12 2012 2012 HOH HOH . M 4 HOH A 13 2013 2013 HOH HOH . M 4 HOH A 14 2014 2014 HOH HOH . M 4 HOH A 15 2015 2015 HOH HOH . M 4 HOH A 16 2016 2016 HOH HOH . M 4 HOH A 17 2017 2017 HOH HOH . M 4 HOH A 18 2018 2018 HOH HOH . M 4 HOH A 19 2019 2019 HOH HOH . M 4 HOH A 20 2020 2020 HOH HOH . M 4 HOH A 21 2021 2021 HOH HOH . M 4 HOH A 22 2022 2022 HOH HOH . M 4 HOH A 23 2023 2023 HOH HOH . M 4 HOH A 24 2024 2024 HOH HOH . M 4 HOH A 25 2025 2025 HOH HOH . M 4 HOH A 26 2026 2026 HOH HOH . M 4 HOH A 27 2027 2027 HOH HOH . M 4 HOH A 28 2028 2028 HOH HOH . M 4 HOH A 29 2029 2029 HOH HOH . M 4 HOH A 30 2030 2030 HOH HOH . M 4 HOH A 31 2031 2031 HOH HOH . M 4 HOH A 32 2032 2032 HOH HOH . M 4 HOH A 33 2033 2033 HOH HOH . M 4 HOH A 34 2034 2034 HOH HOH . M 4 HOH A 35 2035 2035 HOH HOH . M 4 HOH A 36 2036 2036 HOH HOH . M 4 HOH A 37 2037 2037 HOH HOH . M 4 HOH A 38 2038 2038 HOH HOH . M 4 HOH A 39 2039 2039 HOH HOH . M 4 HOH A 40 2040 2040 HOH HOH . M 4 HOH A 41 2041 2041 HOH HOH . M 4 HOH A 42 2042 2042 HOH HOH . M 4 HOH A 43 2043 2043 HOH HOH . M 4 HOH A 44 2044 2044 HOH HOH . M 4 HOH A 45 2045 2045 HOH HOH . M 4 HOH A 46 2046 2046 HOH HOH . M 4 HOH A 47 2047 2047 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . N 4 HOH B 4 2004 2004 HOH HOH . N 4 HOH B 5 2005 2005 HOH HOH . N 4 HOH B 6 2006 2006 HOH HOH . N 4 HOH B 7 2007 2007 HOH HOH . N 4 HOH B 8 2008 2008 HOH HOH . N 4 HOH B 9 2009 2009 HOH HOH . N 4 HOH B 10 2010 2010 HOH HOH . N 4 HOH B 11 2011 2011 HOH HOH . N 4 HOH B 12 2012 2012 HOH HOH . N 4 HOH B 13 2013 2013 HOH HOH . N 4 HOH B 14 2014 2014 HOH HOH . N 4 HOH B 15 2015 2015 HOH HOH . N 4 HOH B 16 2016 2016 HOH HOH . N 4 HOH B 17 2017 2017 HOH HOH . N 4 HOH B 18 2018 2018 HOH HOH . N 4 HOH B 19 2019 2019 HOH HOH . N 4 HOH B 20 2020 2020 HOH HOH . N 4 HOH B 21 2021 2021 HOH HOH . N 4 HOH B 22 2022 2022 HOH HOH . N 4 HOH B 23 2023 2023 HOH HOH . N 4 HOH B 24 2024 2024 HOH HOH . N 4 HOH B 25 2025 2025 HOH HOH . N 4 HOH B 26 2026 2026 HOH HOH . N 4 HOH B 27 2027 2027 HOH HOH . N 4 HOH B 28 2028 2028 HOH HOH . N 4 HOH B 29 2029 2029 HOH HOH . N 4 HOH B 30 2030 2030 HOH HOH . N 4 HOH B 31 2031 2031 HOH HOH . N 4 HOH B 32 2032 2032 HOH HOH . N 4 HOH B 33 2033 2033 HOH HOH . N 4 HOH B 34 2034 2034 HOH HOH . N 4 HOH B 35 2035 2035 HOH HOH . N 4 HOH B 36 2036 2036 HOH HOH . N 4 HOH B 37 2037 2037 HOH HOH . N 4 HOH B 38 2038 2038 HOH HOH . N 4 HOH B 39 2039 2039 HOH HOH . O 4 HOH C 1 2001 2001 HOH HOH . O 4 HOH C 2 2002 2002 HOH HOH . O 4 HOH C 3 2003 2003 HOH HOH . O 4 HOH C 4 2004 2004 HOH HOH . O 4 HOH C 5 2005 2005 HOH HOH . O 4 HOH C 6 2006 2006 HOH HOH . O 4 HOH C 7 2007 2007 HOH HOH . O 4 HOH C 8 2008 2008 HOH HOH . O 4 HOH C 9 2009 2009 HOH HOH . O 4 HOH C 10 2010 2010 HOH HOH . O 4 HOH C 11 2011 2011 HOH HOH . O 4 HOH C 12 2012 2012 HOH HOH . O 4 HOH C 13 2013 2013 HOH HOH . O 4 HOH C 14 2014 2014 HOH HOH . O 4 HOH C 15 2015 2015 HOH HOH . O 4 HOH C 16 2016 2016 HOH HOH . O 4 HOH C 17 2017 2017 HOH HOH . O 4 HOH C 18 2018 2018 HOH HOH . O 4 HOH C 19 2019 2019 HOH HOH . O 4 HOH C 20 2020 2020 HOH HOH . O 4 HOH C 21 2021 2021 HOH HOH . O 4 HOH C 22 2022 2022 HOH HOH . O 4 HOH C 23 2023 2023 HOH HOH . O 4 HOH C 24 2024 2024 HOH HOH . O 4 HOH C 25 2025 2025 HOH HOH . O 4 HOH C 26 2026 2026 HOH HOH . O 4 HOH C 27 2027 2027 HOH HOH . O 4 HOH C 28 2028 2028 HOH HOH . O 4 HOH C 29 2029 2029 HOH HOH . O 4 HOH C 30 2030 2030 HOH HOH . O 4 HOH C 31 2031 2031 HOH HOH . O 4 HOH C 32 2032 2032 HOH HOH . O 4 HOH C 33 2033 2033 HOH HOH . O 4 HOH C 34 2034 2034 HOH HOH . O 4 HOH C 35 2035 2035 HOH HOH . O 4 HOH C 36 2036 2036 HOH HOH . O 4 HOH C 37 2037 2037 HOH HOH . O 4 HOH C 38 2038 2038 HOH HOH . O 4 HOH C 39 2039 2039 HOH HOH . O 4 HOH C 40 2040 2040 HOH HOH . O 4 HOH C 41 2041 2041 HOH HOH . O 4 HOH C 42 2042 2042 HOH HOH . O 4 HOH C 43 2043 2043 HOH HOH . O 4 HOH C 44 2044 2044 HOH HOH . O 4 HOH C 45 2045 2045 HOH HOH . O 4 HOH C 46 2046 2046 HOH HOH . P 4 HOH D 1 2001 2001 HOH HOH . P 4 HOH D 2 2002 2002 HOH HOH . P 4 HOH D 3 2003 2003 HOH HOH . P 4 HOH D 4 2004 2004 HOH HOH . P 4 HOH D 5 2005 2005 HOH HOH . P 4 HOH D 6 2006 2006 HOH HOH . P 4 HOH D 7 2007 2007 HOH HOH . P 4 HOH D 8 2008 2008 HOH HOH . P 4 HOH D 9 2009 2009 HOH HOH . P 4 HOH D 10 2010 2010 HOH HOH . P 4 HOH D 11 2011 2011 HOH HOH . P 4 HOH D 12 2012 2012 HOH HOH . P 4 HOH D 13 2013 2013 HOH HOH . P 4 HOH D 14 2014 2014 HOH HOH . P 4 HOH D 15 2015 2015 HOH HOH . P 4 HOH D 16 2016 2016 HOH HOH . P 4 HOH D 17 2017 2017 HOH HOH . P 4 HOH D 18 2018 2018 HOH HOH . P 4 HOH D 19 2019 2019 HOH HOH . P 4 HOH D 20 2020 2020 HOH HOH . P 4 HOH D 21 2021 2021 HOH HOH . P 4 HOH D 22 2022 2022 HOH HOH . P 4 HOH D 23 2023 2023 HOH HOH . P 4 HOH D 24 2024 2024 HOH HOH . P 4 HOH D 25 2025 2025 HOH HOH . P 4 HOH D 26 2026 2026 HOH HOH . P 4 HOH D 27 2027 2027 HOH HOH . P 4 HOH D 28 2028 2028 HOH HOH . P 4 HOH D 29 2029 2029 HOH HOH . P 4 HOH D 30 2030 2030 HOH HOH . P 4 HOH D 31 2031 2031 HOH HOH . P 4 HOH D 32 2032 2032 HOH HOH . P 4 HOH D 33 2033 2033 HOH HOH . P 4 HOH D 34 2034 2034 HOH HOH . P 4 HOH D 35 2035 2035 HOH HOH . P 4 HOH D 36 2036 2036 HOH HOH . P 4 HOH D 37 2037 2037 HOH HOH . P 4 HOH D 38 2038 2038 HOH HOH . P 4 HOH D 39 2039 2039 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B3P . . . I 2 77.889 -48.162 -28.799 1 22.83 ? C1 B3P 500 C 1 HETATM 2 C C2 B3P . . . I 2 78.585 -47.003 -29.517 1 22.86 ? C2 B3P 500 C 1 HETATM 3 C C3 B3P . . . I 2 78.661 -49.471 -28.847 1 21.81 ? C3 B3P 500 C 1 HETATM 4 N N1 B3P . . . I 2 77.808 -50.615 -29.183 1 21.67 ? N1 B3P 500 C 1 HETATM 5 C C4 B3P . . . I 2 77.754 -51.881 -28.451 1 21.03 ? C4 B3P 500 C 1 HETATM 6 C C5 B3P . . . I 2 76.311 -52.224 -28.127 1 21.77 ? C5 B3P 500 C 1 HETATM 7 C C6 B3P . . . I 2 78.283 -52.967 -29.395 1 20.86 ? C6 B3P 500 C 1 HETATM 8 C C7 B3P . . . I 2 78.467 -51.853 -27.098 1 20.67 ? C7 B3P 500 C 1 HETATM 9 N N2 B3P . . . I 2 79.644 -46.482 -28.672 1 23.95 ? N2 B3P 500 C 1 HETATM 10 C C8 B3P . . . I 2 80.072 -45.098 -28.502 1 25.19 ? C8 B3P 500 C 1 HETATM 11 C C9 B3P . . . I 2 81.514 -45.113 -29.007 1 26.88 ? C9 B3P 500 C 1 HETATM 12 C C10 B3P . . . I 2 79.277 -44.019 -29.24 1 23.72 ? C10 B3P 500 C 1 HETATM 13 C C11 B3P . . . I 2 79.948 -44.803 -27.017 1 25.92 ? C11 B3P 500 C 1 HETATM 14 O O1 B3P . . . I 2 81.555 -45.905 -30.236 1 28.11 ? O1 B3P 500 C 1 HETATM 15 O O2 B3P . . . I 2 79.866 -43.811 -30.54 1 22.04 ? O2 B3P 500 C 1 HETATM 16 O O3 B3P . . . I 2 78.662 -45.294 -26.593 1 29.25 ? O3 B3P 500 C 1 HETATM 17 O O4 B3P . . . I 2 75.544 -51.028 -28.224 1 25.15 ? O4 B3P 500 C 1 HETATM 18 O O5 B3P . . . I 2 77.717 -52.852 -30.724 1 19.44 ? O5 B3P 500 C 1 HETATM 19 O O6 B3P . . . I 2 79.888 -51.628 -27.188 1 21.68 ? O6 B3P 500 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #