data_4ADU
#
_model_server_result.job_id            rToDR9RKAey2SJSNK-ng6w 
_model_server_result.datetime_utc      '2024-11-17 15:31:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4adu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1084}' 
#
_entry.id    4ADU 
#
_exptl.entry_id    4ADU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              230.11 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            RIBOSE-5-PHOSPHATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4ADU 
_cell.length_a            180.471 
_cell.length_b            180.471 
_cell.length_c            102.042 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ADU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
5 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
6 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 84 A LYS 84 1_555 H C1 R5P . A R5P 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale2 B NZ LYS 84 B LYS 84 1_555 I C1 R5P . B R5P 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
#
_chem_comp.formula           'C5 H11 O8 P' 
_chem_comp.formula_weight    230.11 
_chem_comp.id                R5P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RIBOSE-5-PHOSPHATE 
_chem_comp.type              saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 R5P doub 286 n n 
C1 C2 R5P sing 287 n n 
C2 O2 R5P sing 288 n n 
C2 C3 R5P sing 289 n n 
C3 O3 R5P sing 290 n n 
C3 C4 R5P sing 291 n n 
C4 O4 R5P sing 292 n n 
C4 C5 R5P sing 293 n n 
C5 O5 R5P sing 294 n n 
O5 P R5P sing 295 n n 
P O1P R5P doub 296 n n 
P O2P R5P sing 297 n n 
P O3P R5P sing 298 n n 
C1 H11 R5P sing 299 n n 
C2 HC2 R5P sing 300 n n 
O2 HO2 R5P sing 301 n n 
C3 HC3 R5P sing 302 n n 
O3 HO3 R5P sing 303 n n 
C4 HC4 R5P sing 304 n n 
O4 HO4 R5P sing 305 n n 
C5 H51 R5P sing 306 n n 
C5 H52 R5P sing 307 n n 
O2P HOP2 R5P sing 308 n n 
O3P HOP3 R5P sing 309 n n 
#
_atom_sites.entry_id                     4ADU 
_atom_sites.fract_transf_matrix[1][1]    0.005541 
_atom_sites.fract_transf_matrix[1][2]    0.003199 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006398 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0098 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 302 302 EDO EDO . 
D 2 EDO A 1 303 303 EDO EDO . 
E 2 EDO A 1 304 304 EDO EDO . 
F 2 EDO A 1 305 305 EDO EDO . 
G 2 EDO A 1 306 306 EDO EDO . 
H 3 R5P A 1 1084 1084 R5P R5P . 
I 3 R5P B 1 1084 1084 R5P R5P . 
J 4 HOH A 1 2001 2001 HOH HOH . 
J 4 HOH A 2 2002 2002 HOH HOH . 
J 4 HOH A 3 2003 2003 HOH HOH . 
J 4 HOH A 4 2004 2004 HOH HOH . 
J 4 HOH A 5 2005 2005 HOH HOH . 
J 4 HOH A 6 2006 2006 HOH HOH . 
J 4 HOH A 7 2007 2007 HOH HOH . 
J 4 HOH A 8 2008 2008 HOH HOH . 
J 4 HOH A 9 2009 2009 HOH HOH . 
J 4 HOH A 10 2010 2010 HOH HOH . 
J 4 HOH A 11 2011 2011 HOH HOH . 
J 4 HOH A 12 2012 2012 HOH HOH . 
J 4 HOH A 13 2013 2013 HOH HOH . 
J 4 HOH A 14 2014 2014 HOH HOH . 
J 4 HOH A 15 2015 2015 HOH HOH . 
J 4 HOH A 16 2016 2016 HOH HOH . 
J 4 HOH A 17 2017 2017 HOH HOH . 
J 4 HOH A 18 2018 2018 HOH HOH . 
J 4 HOH A 19 2019 2019 HOH HOH . 
J 4 HOH A 20 2020 2020 HOH HOH . 
J 4 HOH A 21 2021 2021 HOH HOH . 
J 4 HOH A 22 2022 2022 HOH HOH . 
J 4 HOH A 23 2023 2023 HOH HOH . 
J 4 HOH A 24 2024 2024 HOH HOH . 
J 4 HOH A 25 2025 2025 HOH HOH . 
J 4 HOH A 26 2026 2026 HOH HOH . 
J 4 HOH A 27 2027 2027 HOH HOH . 
J 4 HOH A 28 2028 2028 HOH HOH . 
J 4 HOH A 29 2029 2029 HOH HOH . 
J 4 HOH A 30 2030 2030 HOH HOH . 
J 4 HOH A 31 2031 2031 HOH HOH . 
J 4 HOH A 32 2032 2032 HOH HOH . 
J 4 HOH A 33 2033 2033 HOH HOH . 
J 4 HOH A 34 2034 2034 HOH HOH . 
J 4 HOH A 35 2035 2035 HOH HOH . 
J 4 HOH A 36 2036 2036 HOH HOH . 
J 4 HOH A 37 2037 2037 HOH HOH . 
J 4 HOH A 38 2038 2038 HOH HOH . 
J 4 HOH A 39 2039 2039 HOH HOH . 
J 4 HOH A 40 2040 2040 HOH HOH . 
J 4 HOH A 41 2041 2041 HOH HOH . 
J 4 HOH A 42 2042 2042 HOH HOH . 
J 4 HOH A 43 2043 2043 HOH HOH . 
J 4 HOH A 44 2044 2044 HOH HOH . 
J 4 HOH A 45 2045 2045 HOH HOH . 
J 4 HOH A 46 2046 2046 HOH HOH . 
J 4 HOH A 47 2047 2047 HOH HOH . 
J 4 HOH A 48 2048 2048 HOH HOH . 
J 4 HOH A 49 2049 2049 HOH HOH . 
J 4 HOH A 50 2050 2050 HOH HOH . 
J 4 HOH A 51 2051 2051 HOH HOH . 
J 4 HOH A 52 2052 2052 HOH HOH . 
J 4 HOH A 53 2053 2053 HOH HOH . 
J 4 HOH A 54 2054 2054 HOH HOH . 
J 4 HOH A 55 2055 2055 HOH HOH . 
J 4 HOH A 56 2056 2056 HOH HOH . 
J 4 HOH A 57 2057 2057 HOH HOH . 
J 4 HOH A 58 2058 2058 HOH HOH . 
J 4 HOH A 59 2059 2059 HOH HOH . 
J 4 HOH A 60 2060 2060 HOH HOH . 
J 4 HOH A 61 2061 2061 HOH HOH . 
J 4 HOH A 62 2062 2062 HOH HOH . 
J 4 HOH A 63 2063 2063 HOH HOH . 
J 4 HOH A 64 2064 2064 HOH HOH . 
J 4 HOH A 65 2065 2065 HOH HOH . 
J 4 HOH A 66 2066 2066 HOH HOH . 
J 4 HOH A 67 2067 2067 HOH HOH . 
J 4 HOH A 68 2068 2068 HOH HOH . 
J 4 HOH A 69 2069 2069 HOH HOH . 
J 4 HOH A 70 2070 2070 HOH HOH . 
J 4 HOH A 71 2071 2071 HOH HOH . 
J 4 HOH A 72 2072 2072 HOH HOH . 
J 4 HOH A 73 2073 2073 HOH HOH . 
J 4 HOH A 74 2074 2074 HOH HOH . 
J 4 HOH A 75 2075 2075 HOH HOH . 
J 4 HOH A 76 2076 2076 HOH HOH . 
J 4 HOH A 77 2077 2077 HOH HOH . 
J 4 HOH A 78 2078 2078 HOH HOH . 
J 4 HOH A 79 2079 2079 HOH HOH . 
J 4 HOH A 80 2080 2080 HOH HOH . 
J 4 HOH A 81 2081 2081 HOH HOH . 
J 4 HOH A 82 2082 2082 HOH HOH . 
J 4 HOH A 83 2083 2083 HOH HOH . 
J 4 HOH A 84 2084 2084 HOH HOH . 
J 4 HOH A 85 2085 2085 HOH HOH . 
J 4 HOH A 86 2086 2086 HOH HOH . 
J 4 HOH A 87 2087 2087 HOH HOH . 
J 4 HOH A 88 2088 2088 HOH HOH . 
K 4 HOH B 1 2001 2001 HOH HOH . 
K 4 HOH B 2 2002 2002 HOH HOH . 
K 4 HOH B 3 2003 2003 HOH HOH . 
K 4 HOH B 4 2004 2004 HOH HOH . 
K 4 HOH B 5 2005 2005 HOH HOH . 
K 4 HOH B 6 2006 2006 HOH HOH . 
K 4 HOH B 7 2007 2007 HOH HOH . 
K 4 HOH B 8 2008 2008 HOH HOH . 
K 4 HOH B 9 2009 2009 HOH HOH . 
K 4 HOH B 10 2010 2010 HOH HOH . 
K 4 HOH B 11 2011 2011 HOH HOH . 
K 4 HOH B 12 2012 2012 HOH HOH . 
K 4 HOH B 13 2013 2013 HOH HOH . 
K 4 HOH B 14 2014 2014 HOH HOH . 
K 4 HOH B 15 2015 2015 HOH HOH . 
K 4 HOH B 16 2016 2016 HOH HOH . 
K 4 HOH B 17 2017 2017 HOH HOH . 
K 4 HOH B 18 2018 2018 HOH HOH . 
K 4 HOH B 19 2019 2019 HOH HOH . 
K 4 HOH B 20 2020 2020 HOH HOH . 
K 4 HOH B 21 2021 2021 HOH HOH . 
K 4 HOH B 22 2022 2022 HOH HOH . 
K 4 HOH B 23 2023 2023 HOH HOH . 
K 4 HOH B 24 2024 2024 HOH HOH . 
K 4 HOH B 25 2025 2025 HOH HOH . 
K 4 HOH B 26 2026 2026 HOH HOH . 
K 4 HOH B 27 2027 2027 HOH HOH . 
K 4 HOH B 28 2028 2028 HOH HOH . 
K 4 HOH B 29 2029 2029 HOH HOH . 
K 4 HOH B 30 2030 2030 HOH HOH . 
K 4 HOH B 31 2031 2031 HOH HOH . 
K 4 HOH B 32 2032 2032 HOH HOH . 
K 4 HOH B 33 2033 2033 HOH HOH . 
K 4 HOH B 34 2034 2034 HOH HOH . 
K 4 HOH B 35 2035 2035 HOH HOH . 
K 4 HOH B 36 2036 2036 HOH HOH . 
K 4 HOH B 37 2037 2037 HOH HOH . 
K 4 HOH B 38 2038 2038 HOH HOH . 
K 4 HOH B 39 2039 2039 HOH HOH . 
K 4 HOH B 40 2040 2040 HOH HOH . 
K 4 HOH B 41 2041 2041 HOH HOH . 
K 4 HOH B 42 2042 2042 HOH HOH . 
K 4 HOH B 43 2043 2043 HOH HOH . 
K 4 HOH B 44 2044 2044 HOH HOH . 
K 4 HOH B 45 2045 2045 HOH HOH . 
K 4 HOH B 46 2046 2046 HOH HOH . 
K 4 HOH B 47 2047 2047 HOH HOH . 
K 4 HOH B 48 2048 2048 HOH HOH . 
K 4 HOH B 49 2049 2049 HOH HOH . 
K 4 HOH B 50 2050 2050 HOH HOH . 
K 4 HOH B 51 2051 2051 HOH HOH . 
K 4 HOH B 52 2052 2052 HOH HOH . 
K 4 HOH B 53 2053 2053 HOH HOH . 
K 4 HOH B 54 2054 2054 HOH HOH . 
K 4 HOH B 55 2055 2055 HOH HOH . 
K 4 HOH B 56 2056 2056 HOH HOH . 
K 4 HOH B 57 2057 2057 HOH HOH . 
K 4 HOH B 58 2058 2058 HOH HOH . 
K 4 HOH B 59 2059 2059 HOH HOH . 
K 4 HOH B 60 2060 2060 HOH HOH . 
K 4 HOH B 61 2061 2061 HOH HOH . 
K 4 HOH B 62 2062 2062 HOH HOH . 
K 4 HOH B 63 2063 2063 HOH HOH . 
K 4 HOH B 64 2064 2064 HOH HOH . 
K 4 HOH B 65 2065 2065 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 R5P . . . I 3 33.248 4.484 -25.489 1 48.49 ? C1 R5P 1084 B 1 
HETATM 2 C C2 R5P . . . I 3 33.701 5.615 -26.419 1 52.12 ? C2 R5P 1084 B 1 
HETATM 3 O O2 R5P . . . I 3 35.131 5.766 -26.389 1 54.31 ? O2 R5P 1084 B 1 
HETATM 4 C C3 R5P . . . I 3 33.115 6.974 -26.061 1 51.82 ? C3 R5P 1084 B 1 
HETATM 5 O O3 R5P . . . I 3 33.312 7.808 -27.194 1 52.65 ? O3 R5P 1084 B 1 
HETATM 6 C C4 R5P . . . I 3 31.618 6.976 -25.803 1 52.4 ? C4 R5P 1084 B 1 
HETATM 7 O O4 R5P . . . I 3 31.331 6.737 -24.394 1 53.09 ? O4 R5P 1084 B 1 
HETATM 8 C C5 R5P . . . I 3 31.03 8.325 -26.274 1 51.19 ? C5 R5P 1084 B 1 
HETATM 9 O O5 R5P . . . I 3 31.147 8.638 -27.672 1 47.15 ? O5 R5P 1084 B 1 
HETATM 10 P P R5P . . . I 3 30.116 9.655 -28.415 1 45.7 ? P R5P 1084 B 1 
HETATM 11 O O1P R5P . . . I 3 30.92 10.87 -28.82 1 45.88 ? O1P R5P 1084 B 1 
HETATM 12 O O2P R5P . . . I 3 29.63 8.834 -29.58 1 44.87 ? O2P R5P 1084 B 1 
HETATM 13 O O3P R5P . . . I 3 29.028 10.024 -27.44 1 43.33 ? O3P R5P 1084 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           13 
#