data_4AED # _model_server_result.job_id CLb4EKP43HGGvI55y5RIQA _model_server_result.datetime_utc '2024-10-19 04:48:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4aed # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1255}' # _entry.id 4AED # _exptl.entry_id 4AED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AED _cell.length_a 600.2 _cell.length_b 610.6 _cell.length_c 851.8 _cell.Z_PDB 960 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AED _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 240-MERIC 240 'complete icosahedral assembly' 1 ? tetrameric 4 'icosahedral asymmetric unit' 2 ? eicosameric 20 'icosahedral pentamer' 3 ? 24-meric 24 'icosahedral 23 hexamer' 4 ? tetrameric 4 'icosahedral asymmetric unit, std point frame' 5 ? 480-meric 480 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 (1-60) A,B,C,D,E,F,G,H,I,J 2 1 A,B,C,D,E,F,G,H,I,J 3 (1-5) A,B,C,D,E,F,G,H,I,J 4 (1,2,6,10,23,24) A,B,C,D,E,F,G,H,I,J 5 P A,B,C,D,E,F,G,H,I,J 6 (X0)(1-60) A,B,C,D,E,F,G,H,I,J 6 (X1)(1-60) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.127906 0.560919 -0.81793 -0.838214 0.379683 0.391456 0.53013 0.73567 0.421607 105.28401 -15.52132 -282.27591 X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 X1 'transform to crystal frame' ? ? 0.923291 0.139366 -0.357926 -0.314425 0.80946 -0.495894 0.220616 0.570396 0.791187 216.77599 330.16638 137.66064 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.30909 -0.530952 0.789021 0.542678 0.779785 0.312149 -0.781002 0.331702 0.529159 19.09526 -113.35815 165.42151 3 'point symmetry operation' ? ? -0.808826 -0.31642 0.49566 0.34712 0.423468 0.836769 -0.474667 0.848854 -0.232677 215.70611 -139.75442 200.4413 4 'point symmetry operation' ? ? -0.808826 0.34712 -0.474667 -0.31642 0.423468 0.848854 0.49566 0.836769 -0.232677 318.12304 -42.71006 56.6632 5 'point symmetry operation' ? ? 0.30909 0.542678 -0.781002 -0.530952 0.779785 0.331702 0.789021 0.312149 0.529159 184.80933 43.66292 -67.21633 6 'point symmetry operation' ? ? -0.437925 0.780001 0.447012 0.780001 0.082421 0.620327 0.447012 0.620327 -0.644496 0.91246 -106.32523 184.3818 7 'point symmetry operation' ? ? -0.061186 0.989025 0.134485 -0.198658 -0.144109 0.969416 0.978157 0.032599 0.205295 -21.92387 1.84136 15.98505 8 'point symmetry operation' ? ? 0.412777 0.848322 0.331609 -0.896724 0.314662 0.311248 0.159693 -0.425838 0.890595 -112.95958 174.74612 64.92808 9 'point symmetry operation' ? ? 0.328964 0.552339 0.765966 -0.349493 0.824727 -0.444613 -0.87729 -0.121439 0.464344 -146.38641 173.44055 263.57329 10 'point symmetry operation' ? ? -0.196799 0.510114 0.837289 0.686779 0.681194 -0.253591 -0.699717 0.525126 -0.484395 -76.00961 -0.2711 337.39975 11 'point symmetry operation' ? ? 0.405206 -0.636512 -0.656248 -0.636512 -0.711681 0.297259 -0.656248 0.297259 -0.693524 326.21845 297.21233 410.24871 12 'point symmetry operation' ? ? 0.292355 -0.929165 -0.22623 -0.815113 -0.1184 -0.567074 0.50012 0.35019 -0.791989 297.55219 414.90582 249.29697 13 'point symmetry operation' ? ? -0.237187 -0.954816 -0.179075 0.12669 0.15236 -0.980172 0.963168 -0.255171 0.084828 371.03987 318.9564 88.1379 14 'point symmetry operation' ? ? -0.451612 -0.678016 -0.57995 0.887357 -0.273583 -0.371148 0.092979 -0.682237 0.725195 445.12402 141.9629 149.48786 15 'point symmetry operation' ? ? -0.054591 -0.481293 -0.874858 0.415672 -0.80759 0.418348 -0.907875 -0.340816 0.244147 417.42285 128.52433 348.56329 16 'point symmetry operation' ? ? -0.96728 -0.143489 0.209236 -0.143489 -0.37074 -0.917585 0.209236 -0.917585 0.33802 273.26523 427.11029 250.17057 17 'point symmetry operation' ? ? -0.540259 0.471092 -0.697275 0.471092 -0.517276 -0.714491 -0.697275 -0.714491 0.057535 305.67257 314.60836 414.09755 18 'point symmetry operation' ? ? 0.633236 0.422914 -0.648194 0.422914 -0.890489 -0.167845 -0.648194 -0.167845 -0.742746 126.60974 264.04929 491.2938 19 'point symmetry operation' ? ? 0.931474 -0.221443 0.28865 -0.221443 -0.974612 -0.033094 0.28865 -0.033094 -0.956863 -16.4645 345.30401 375.07673 20 'point symmetry operation' ? ? -0.057699 -0.5715 0.818571 -0.5715 -0.653389 -0.496459 0.818571 -0.496459 -0.288912 74.17358 446.08125 226.05437 21 'point symmetry operation' ? ? -0.404956 -0.362985 0.839197 -0.367853 0.904944 0.213915 -0.837075 -0.222075 -0.499988 89.72487 24.72144 476.75248 22 'point symmetry operation' ? ? -0.977567 0.210326 0.011245 0.210326 0.97193 0.105429 0.011245 0.105429 -0.994363 261.96075 -49.49946 403.23352 23 'point symmetry operation' ? ? -0.196799 0.686779 -0.699717 0.510114 0.681194 0.525126 0.837289 -0.253591 -0.484395 221.31191 -138.21923 227.00795 24 'point symmetry operation' ? ? 0.858352 0.407933 -0.311164 0.117216 0.434524 0.893 0.499493 -0.802981 0.325158 23.95367 -118.83018 191.61353 25 'point symmetry operation' ? ? 0.729704 -0.240857 0.639938 -0.425398 0.572809 0.700661 -0.535321 -0.783503 0.315521 -57.37159 -18.12731 345.96413 26 'point symmetry operation' ? ? 0.269343 0.174793 -0.947049 0.962572 -0.079642 0.259059 -0.030143 -0.981379 -0.189701 282.68257 -32.39056 407.41212 27 'point symmetry operation' ? ? 0.917754 -0.320846 -0.234061 0.051976 -0.487253 0.871713 -0.393733 -0.812184 -0.430502 111.34931 37.87198 486.70315 28 'point symmetry operation' ? ? 0.292355 -0.815113 0.50012 -0.929165 -0.1184 0.35019 -0.22623 -0.567074 -0.791989 126.52578 238.2986 500.03813 29 'point symmetry operation' ? ? -0.742574 -0.624948 0.240881 -0.624948 0.517175 -0.584782 0.240881 -0.584782 -0.7746 307.23861 291.90652 428.98858 30 'point symmetry operation' ? ? -0.756796 -0.013153 -0.653518 0.54421 0.541128 -0.641105 0.36207 -0.840837 -0.402366 403.74881 124.61142 371.74256 31 'point symmetry operation' ? ? -0.483768 0.765548 -0.424152 -0.865445 -0.346301 0.36205 0.130282 0.542229 0.830069 194.01658 261.44012 -67.43972 32 'point symmetry operation' ? ? 0.597182 0.713127 -0.367182 -0.738192 0.309562 -0.599369 -0.313761 0.628984 0.71129 27.83389 344.06113 10.89328 33 'point symmetry operation' ? ? 0.858352 0.117216 0.499493 0.407933 0.434524 -0.802982 -0.311164 0.893 0.325158 -102.34144 195.72519 51.26416 34 'point symmetry operation' ? ? -0.061186 -0.198658 0.978157 0.989025 -0.144108 0.032599 0.134485 0.969416 0.205295 -16.61153 21.42752 -2.11827 35 'point symmetry operation' ? ? -0.890662 0.202034 0.407313 0.202034 -0.626685 0.752628 0.407313 0.752628 0.517347 166.5478 62.04158 -75.4813 36 'point symmetry operation' ? ? 0.619381 -0.577355 0.532004 0.270726 -0.479001 -0.835024 0.736936 0.661225 -0.140379 33.97213 364.2264 28.0762 37 'point symmetry operation' ? ? -0.53737 -0.602607 0.589999 0.47589 -0.794239 -0.377772 0.696249 0.077771 0.713575 199.2522 285.56375 -56.02887 38 'point symmetry operation' ? ? -0.953907 0.011118 -0.299895 0.011118 -0.997318 -0.072335 -0.299895 -0.072335 0.951226 354.8999 322.19285 66.49084 39 'point symmetry operation' ? ? -0.054591 0.415672 -0.907875 -0.481293 -0.80759 -0.340816 -0.874858 0.418348 0.244147 285.8154 423.49353 226.31724 40 'point symmetry operation' ? ? 0.917754 0.051976 -0.393733 -0.320846 -0.487253 -0.812184 -0.234061 0.871713 -0.430502 87.47113 449.4717 202.57569 41 'point symmetry operation' ? ? -0.404956 -0.367853 -0.837075 -0.362985 0.904944 -0.222075 0.839197 0.213915 -0.499988 444.5061 116.07203 157.78543 42 'point symmetry operation' ? ? 0.328964 -0.349493 -0.87729 0.552339 0.824727 -0.121439 0.765966 -0.444613 0.464344 340.00227 -30.17806 66.85228 43 'point symmetry operation' ? ? 0.597182 -0.738192 -0.313761 0.713127 0.309562 0.628984 -0.367182 -0.599369 0.71129 240.77922 -133.20907 208.69154 44 'point symmetry operation' ? ? 0.02903 -0.996781 0.074734 -0.102824 0.071391 0.992134 -0.994276 -0.036486 -0.100421 283.95984 -50.63565 387.28617 45 'point symmetry operation' ? ? -0.590325 -0.767899 -0.248692 -0.767899 0.439357 0.466151 -0.248692 0.466151 -0.849032 409.86997 103.42855 355.82446 46 'point symmetry operation' ? ? -0.483768 -0.865445 0.130282 0.765548 -0.346301 0.542229 -0.424152 0.36205 0.830069 328.90724 -21.42417 43.61786 47 'point symmetry operation' ? ? -0.720936 -0.374789 -0.58291 -0.374789 -0.496651 0.782861 -0.58291 0.782861 0.217587 439.32627 122.14652 131.78853 48 'point symmetry operation' ? ? 0.02903 -0.102824 -0.994276 -0.996781 0.071391 -0.036486 0.074734 0.992134 -0.100421 371.61924 300.79133 67.90764 49 'point symmetry operation' ? ? 0.729704 -0.425398 -0.535321 -0.240857 0.572809 -0.783503 0.639938 0.700661 0.315521 219.35496 267.62919 -59.7436 50 'point symmetry operation' ? ? 0.412777 -0.896724 0.159694 0.848322 0.314662 -0.425838 0.331609 0.311248 0.890595 192.95749 68.48906 -74.75551 51 'point symmetry operation' ? ? 0.619381 0.270726 0.736936 -0.577355 -0.479001 0.661225 0.532004 -0.835024 -0.140379 -140.3375 175.51426 290.00583 52 'point symmetry operation' ? ? -0.237187 0.12669 0.963168 -0.954816 0.15236 -0.255171 -0.179075 -0.980172 0.084828 -37.29413 328.16911 371.59958 53 'point symmetry operation' ? ? -0.756796 0.54421 0.36207 -0.013153 0.541128 -0.840837 -0.653518 -0.641105 -0.402366 103.14408 250.45464 493.32283 54 'point symmetry operation' ? ? -0.221364 0.946288 -0.235661 0.946288 0.15004 -0.286402 -0.235661 -0.286402 -0.928675 86.8963 49.76962 486.95817 55 'point symmetry operation' ? ? 0.62916 0.777266 -0.003981 0.597592 -0.480435 0.641923 0.497032 -0.406251 -0.766759 -63.58359 3.45392 361.30136 56 'point symmetry operation' ? ? 0.269343 0.962572 -0.030143 0.174793 -0.079642 -0.981379 -0.947049 0.259059 -0.189701 -32.67969 347.83528 353.39196 57 'point symmetry operation' ? ? 0.62916 0.597592 0.497032 0.777266 -0.480435 -0.406251 -0.003981 0.641923 -0.766759 -141.63826 197.85983 274.56068 58 'point symmetry operation' ? ? 0.130584 0.296806 0.945967 0.296806 -0.922081 0.24834 0.945967 0.24834 -0.208503 -115.14639 199.96049 74.87907 59 'point symmetry operation' ? ? -0.53737 0.47589 0.696249 -0.602607 -0.794239 0.077771 0.589999 -0.377772 0.713575 10.18505 351.23423 30.30034 60 'point symmetry operation' ? ? -0.451612 0.887357 0.092979 -0.678016 -0.273583 -0.682237 -0.57995 -0.371148 0.725195 61.15227 442.62587 202.43077 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 67 B ASP 67 1_555 F CA CA . B CA 1255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc2 B OD1 ASP 84 B ASP 84 1_555 G CA CA . B CA 1256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.005 ? metalc ? metalc3 B OH TYR 148 B TYR 148 1_555 G CA CA . B CA 1256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.186 ? metalc ? metalc4 B OD2 ASP 156 B ASP 156 1_555 F CA CA . B CA 1255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc5 B OD1 ASP 156 B ASP 156 1_555 F CA CA . B CA 1255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc6 B OD2 ASP 225 B ASP 225 1_555 H CA CA . C CA 1243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc7 C O ILE 206 C ILE 206 1_555 I CA CA . C CA 1244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.121 ? metalc ? metalc8 C O ALA 208 C ALA 208 1_555 H CA CA . C CA 1243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? metalc ? metalc9 C OD1 ASN 210 C ASN 210 1_555 H CA CA . C CA 1243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.144 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4AED _atom_sites.fract_transf_matrix[1][1] 0.001666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.001638 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 DAO A 1 1289 1289 DAO DAO . F 6 CA B 1 1255 1255 CA CA . G 6 CA B 1 1256 1256 CA CA . H 6 CA C 1 1243 1243 CA CA . I 6 CA C 1 1244 1244 CA CA . J 6 CA C 1 1245 1245 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 183.722 _atom_site.Cartn_y 292.522 _atom_site.Cartn_z 226.762 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 72.03 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1255 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #