data_4AF3
#
_model_server_result.job_id            MuYfYtvdqEDgkU6r4sejjA 
_model_server_result.datetime_utc      '2024-11-22 20:06:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4af3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    4AF3 
#
_exptl.entry_id    4AF3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              464.586 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4AF3 
_cell.length_a            80.145 
_cell.length_b            80.145 
_cell.length_c            92.542 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AF3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C23 H28 N8 O S' 
_chem_comp.formula_weight    464.586 
_chem_comp.id                VX6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 VX6 sing 376 n n 
N1 C6 VX6 sing 377 n n 
N1 C7 VX6 sing 378 n n 
C2 C3 VX6 sing 379 n n 
C2 H21 VX6 sing 380 n n 
C2 H22 VX6 sing 381 n n 
C3 N4 VX6 sing 382 n n 
C3 H31 VX6 sing 383 n n 
C3 H32 VX6 sing 384 n n 
N4 C5 VX6 sing 385 n n 
N4 C8 VX6 sing 386 n n 
C5 C6 VX6 sing 387 n n 
C5 H51 VX6 sing 388 n n 
C5 H52 VX6 sing 389 n n 
C6 H61 VX6 sing 390 n n 
C6 H62 VX6 sing 391 n n 
C7 H71 VX6 sing 392 n n 
C7 H72 VX6 sing 393 n n 
C7 H73 VX6 sing 394 n n 
C8 C9 VX6 sing 395 n y 
C8 N13 VX6 doub 396 n y 
C9 C10 VX6 doub 397 n y 
C9 H9 VX6 sing 398 n n 
C10 N11 VX6 sing 399 n y 
C10 N14 VX6 sing 400 n n 
N11 C12 VX6 doub 401 n y 
C12 N13 VX6 sing 402 n y 
C12 S23 VX6 sing 403 n n 
N14 C15 VX6 sing 404 n n 
N14 H14 VX6 sing 405 n n 
C15 C17 VX6 doub 406 n y 
C15 N20 VX6 sing 407 n y 
C17 C18 VX6 sing 408 n y 
C17 H17 VX6 sing 409 n n 
C18 N19 VX6 doub 410 n y 
C18 C21 VX6 sing 411 n n 
N19 N20 VX6 sing 412 n y 
N20 H20 VX6 sing 413 n n 
C21 H211 VX6 sing 414 n n 
C21 H212 VX6 sing 415 n n 
C21 H213 VX6 sing 416 n n 
S23 C24 VX6 sing 417 n n 
C24 C25 VX6 sing 418 n y 
C24 C29 VX6 doub 419 n y 
C25 C26 VX6 doub 420 n y 
C25 H25 VX6 sing 421 n n 
C26 C27 VX6 sing 422 n y 
C26 H26 VX6 sing 423 n n 
C27 C28 VX6 doub 424 n y 
C27 N30 VX6 sing 425 n n 
C28 C29 VX6 sing 426 n y 
C28 H28 VX6 sing 427 n n 
C29 H29 VX6 sing 428 n n 
N30 C31 VX6 sing 429 n n 
N30 H30 VX6 sing 430 n n 
C31 O32 VX6 doub 431 n n 
C31 C33 VX6 sing 432 n n 
C33 C34 VX6 sing 433 n n 
C33 C35 VX6 sing 434 n n 
C33 H33 VX6 sing 435 n n 
C34 C35 VX6 sing 436 n n 
C34 H341 VX6 sing 437 n n 
C34 H342 VX6 sing 438 n n 
C35 H351 VX6 sing 439 n n 
C35 H352 VX6 sing 440 n n 
#
_atom_sites.entry_id                     4AF3 
_atom_sites.fract_transf_matrix[1][1]    0.012477 
_atom_sites.fract_transf_matrix[1][2]    0.007204 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014408 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010806 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 VX6 A 1 500 500 VX6 VX6 . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
D 4 HOH A 14 2014 2014 HOH HOH . 
D 4 HOH A 15 2015 2015 HOH HOH . 
D 4 HOH A 16 2016 2016 HOH HOH . 
D 4 HOH A 17 2017 2017 HOH HOH . 
D 4 HOH A 18 2018 2018 HOH HOH . 
D 4 HOH A 19 2019 2019 HOH HOH . 
D 4 HOH A 20 2020 2020 HOH HOH . 
D 4 HOH A 21 2021 2021 HOH HOH . 
D 4 HOH A 22 2022 2022 HOH HOH . 
D 4 HOH A 23 2023 2023 HOH HOH . 
D 4 HOH A 24 2024 2024 HOH HOH . 
D 4 HOH A 25 2025 2025 HOH HOH . 
D 4 HOH A 26 2026 2026 HOH HOH . 
D 4 HOH A 27 2027 2027 HOH HOH . 
D 4 HOH A 28 2028 2028 HOH HOH . 
E 4 HOH D 1 2001 2001 HOH HOH . 
E 4 HOH D 2 2002 2002 HOH HOH . 
E 4 HOH D 3 2003 2003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 VX6 . . . C 3 26.828 -20.575 -15.182 1 69.62 ? N1 VX6 500 A 1 
HETATM 2 C C2 VX6 . . . C 3 25.486 -20.521 -15.837 1 66.04 ? C2 VX6 500 A 1 
HETATM 3 C C3 VX6 . . . C 3 24.451 -20.153 -14.812 1 60.73 ? C3 VX6 500 A 1 
HETATM 4 N N4 VX6 . . . C 3 24.395 -21.237 -13.801 1 58.08 ? N4 VX6 500 A 1 
HETATM 5 C C5 VX6 . . . C 3 25.577 -22.127 -13.69 1 58.16 ? C5 VX6 500 A 1 
HETATM 6 C C6 VX6 . . . C 3 26.813 -21.315 -13.893 1 63.56 ? C6 VX6 500 A 1 
HETATM 7 C C7 VX6 . . . C 3 27.452 -19.236 -14.994 1 64.43 ? C7 VX6 500 A 1 
HETATM 8 C C8 VX6 . . . C 3 23.346 -21.455 -12.981 1 55.89 ? C8 VX6 500 A 1 
HETATM 9 C C9 VX6 . . . C 3 22.041 -21.012 -13.21 1 50.99 ? C9 VX6 500 A 1 
HETATM 10 C C10 VX6 . . . C 3 21.053 -21.332 -12.277 1 52.05 ? C10 VX6 500 A 1 
HETATM 11 N N11 VX6 . . . C 3 21.389 -22.061 -11.188 1 54.21 ? N11 VX6 500 A 1 
HETATM 12 C C12 VX6 . . . C 3 22.65 -22.486 -10.995 1 56.78 ? C12 VX6 500 A 1 
HETATM 13 N N13 VX6 . . . C 3 23.598 -22.182 -11.883 1 56.53 ? N13 VX6 500 A 1 
HETATM 14 N N14 VX6 . . . C 3 19.8 -20.879 -12.502 1 51.82 ? N14 VX6 500 A 1 
HETATM 15 C C15 VX6 . . . C 3 18.709 -21.291 -11.81 1 51.37 ? C15 VX6 500 A 1 
HETATM 16 C C17 VX6 . . . C 3 18.529 -22.247 -10.889 1 50 ? C17 VX6 500 A 1 
HETATM 17 C C18 VX6 . . . C 3 17.241 -22.162 -10.569 1 49.37 ? C18 VX6 500 A 1 
HETATM 18 N N19 VX6 . . . C 3 16.683 -21.195 -11.273 1 52.72 ? N19 VX6 500 A 1 
HETATM 19 N N20 VX6 . . . C 3 17.538 -20.693 -11.995 1 53.21 ? N20 VX6 500 A 1 
HETATM 20 C C21 VX6 . . . C 3 16.452 -23.009 -9.561 1 48.94 ? C21 VX6 500 A 1 
HETATM 21 S S23 VX6 . . . C 3 23.137 -23.446 -9.585 1 61.88 ? S23 VX6 500 A 1 
HETATM 22 C C24 VX6 . . . C 3 21.775 -23.261 -8.558 1 59.21 ? C24 VX6 500 A 1 
HETATM 23 C C25 VX6 . . . C 3 21.638 -22.103 -7.812 1 59.37 ? C25 VX6 500 A 1 
HETATM 24 C C26 VX6 . . . C 3 20.545 -21.947 -6.975 1 60.03 ? C26 VX6 500 A 1 
HETATM 25 C C27 VX6 . . . C 3 19.573 -22.941 -6.868 1 60.42 ? C27 VX6 500 A 1 
HETATM 26 C C28 VX6 . . . C 3 19.724 -24.111 -7.634 1 57.34 ? C28 VX6 500 A 1 
HETATM 27 C C29 VX6 . . . C 3 20.823 -24.263 -8.467 1 57.48 ? C29 VX6 500 A 1 
HETATM 28 N N30 VX6 . . . C 3 18.549 -22.683 -6.029 1 59.88 ? N30 VX6 500 A 1 
HETATM 29 C C31 VX6 . . . C 3 17.519 -23.54 -5.913 1 60.59 ? C31 VX6 500 A 1 
HETATM 30 O O32 VX6 . . . C 3 17.404 -24.606 -6.511 1 59.71 ? O32 VX6 500 A 1 
HETATM 31 C C33 VX6 . . . C 3 16.424 -23.095 -4.95 1 62.43 ? C33 VX6 500 A 1 
HETATM 32 C C34 VX6 . . . C 3 14.999 -22.971 -5.509 1 63.64 ? C34 VX6 500 A 1 
HETATM 33 C C35 VX6 . . . C 3 15.358 -24.128 -4.604 1 63.22 ? C35 VX6 500 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           33 
#