data_4AFE
#
_model_server_result.job_id            1tR6-Be69G8zxdwMCO-yQw 
_model_server_result.datetime_utc      '2024-12-21 13:42:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4afe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1280}' 
#
_entry.id    4AFE 
#
_exptl.entry_id    4AFE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              490.541 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(2-AMINO-5-{4-[(DIMETHYLAMINO)METHYL]THIOPHEN-2-YL}PYRIDIN-3-YL)-2-{[(1R,2Z)-4,4,4-TRIFLUORO-1-METHYLBUT-2-EN-1-YL]OXY}BENZAMIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          127.1 
_cell.angle_gamma         90 
_cell.entry_id            4AFE 
_cell.length_a            101.039 
_cell.length_b            56.724 
_cell.length_c            74.279 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AFE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H25 F3 N4 O2 S' 
_chem_comp.formula_weight    490.541 
_chem_comp.id                GGY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(2-AMINO-5-{4-[(DIMETHYLAMINO)METHYL]THIOPHEN-2-YL}PYRIDIN-3-YL)-2-{[(1R,2Z)-4,4,4-TRIFLUORO-1-METHYLBUT-2-EN-1-YL]OXY}BENZAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 GGY sing 92 n n 
C02 C03 GGY sing 93 n n 
C02 O09 GGY sing 94 n n 
C03 C04 GGY doub 95 z n 
C04 C05 GGY sing 96 n n 
C05 F06 GGY sing 97 n n 
C05 F07 GGY sing 98 n n 
C05 F08 GGY sing 99 n n 
O09 C10 GGY sing 100 n n 
C10 C11 GGY sing 101 n y 
C10 C31 GGY doub 102 n y 
C11 C12 GGY doub 103 n y 
C12 C13 GGY sing 104 n n 
C12 C29 GGY sing 105 n y 
C13 C14 GGY doub 106 n y 
C13 C27 GGY sing 107 n y 
C14 C15 GGY sing 108 n y 
C15 C16 GGY sing 109 n n 
C15 C25 GGY doub 110 n y 
C16 C17 GGY doub 111 n y 
C16 S24 GGY sing 112 n y 
C17 C18 GGY sing 113 n y 
C18 C19 GGY sing 114 n n 
C18 C23 GGY doub 115 n y 
C19 N20 GGY sing 116 n n 
N20 C21 GGY sing 117 n n 
N20 C22 GGY sing 118 n n 
C23 S24 GGY sing 119 n y 
C25 N26 GGY sing 120 n y 
N26 C27 GGY doub 121 n y 
C27 N28 GGY sing 122 n n 
C29 C30 GGY doub 123 n y 
C30 C31 GGY sing 124 n y 
C31 C32 GGY sing 125 n n 
C32 N33 GGY sing 126 n n 
C32 O34 GGY doub 127 n n 
C01 H011 GGY sing 128 n n 
C01 H012 GGY sing 129 n n 
C01 H013 GGY sing 130 n n 
C02 H02 GGY sing 131 n n 
C03 H03 GGY sing 132 n n 
C04 H04 GGY sing 133 n n 
C11 H11 GGY sing 134 n n 
C29 H29 GGY sing 135 n n 
C14 H14 GGY sing 136 n n 
C25 H25 GGY sing 137 n n 
C17 H17 GGY sing 138 n n 
C19 H191 GGY sing 139 n n 
C19 H192 GGY sing 140 n n 
C23 H23 GGY sing 141 n n 
C21 H211 GGY sing 142 n n 
C21 H212 GGY sing 143 n n 
C21 H213 GGY sing 144 n n 
C22 H221 GGY sing 145 n n 
C22 H222 GGY sing 146 n n 
C22 H223 GGY sing 147 n n 
N28 H281 GGY sing 148 n n 
N28 H282 GGY sing 149 n n 
C30 H30 GGY sing 150 n n 
N33 H331 GGY sing 151 n n 
N33 H332 GGY sing 152 n n 
#
_atom_sites.entry_id                     4AFE 
_atom_sites.fract_transf_matrix[1][1]    0.009897 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007485 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016879 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GGY A 1 1280 1280 GGY GGY . 
C 3 EDO A 1 1281 1281 EDO EDO . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
D 4 HOH A 14 2014 2014 HOH HOH . 
D 4 HOH A 15 2015 2015 HOH HOH . 
D 4 HOH A 16 2016 2016 HOH HOH . 
D 4 HOH A 17 2017 2017 HOH HOH . 
D 4 HOH A 18 2018 2018 HOH HOH . 
D 4 HOH A 19 2019 2019 HOH HOH . 
D 4 HOH A 20 2020 2020 HOH HOH . 
D 4 HOH A 21 2021 2021 HOH HOH . 
D 4 HOH A 22 2022 2022 HOH HOH . 
D 4 HOH A 23 2023 2023 HOH HOH . 
D 4 HOH A 24 2024 2024 HOH HOH . 
D 4 HOH A 25 2025 2025 HOH HOH . 
D 4 HOH A 26 2026 2026 HOH HOH . 
D 4 HOH A 27 2027 2027 HOH HOH . 
D 4 HOH A 28 2028 2028 HOH HOH . 
D 4 HOH A 29 2029 2029 HOH HOH . 
D 4 HOH A 30 2030 2030 HOH HOH . 
D 4 HOH A 31 2031 2031 HOH HOH . 
D 4 HOH A 32 2032 2032 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 GGY . . . B 2 0.734 -10.635 16.21 1 50.1 ? C01 GGY 1280 A 1 
HETATM 2 C C02 GGY . . . B 2 1.638 -10.386 15.064 1 46.91 ? C02 GGY 1280 A 1 
HETATM 3 C C03 GGY . . . B 2 2.287 -11.699 14.649 1 47.55 ? C03 GGY 1280 A 1 
HETATM 4 C C04 GGY . . . B 2 1.654 -12.523 13.768 1 46.76 ? C04 GGY 1280 A 1 
HETATM 5 C C05 GGY . . . B 2 0.335 -12.141 13.216 1 55.6 ? C05 GGY 1280 A 1 
HETATM 6 F F06 GGY . . . B 2 -0.113 -13.112 12.399 1 52.51 ? F06 GGY 1280 A 1 
HETATM 7 F F07 GGY . . . B 2 0.455 -10.992 12.522 1 48.78 ? F07 GGY 1280 A 1 
HETATM 8 F F08 GGY . . . B 2 -0.531 -11.968 14.216 1 59.48 ? F08 GGY 1280 A 1 
HETATM 9 O O09 GGY . . . B 2 2.589 -9.441 15.425 1 41.36 ? O09 GGY 1280 A 1 
HETATM 10 C C10 GGY . . . B 2 3.356 -8.797 14.437 1 35.24 ? C10 GGY 1280 A 1 
HETATM 11 C C11 GGY . . . B 2 2.776 -8.505 13.209 1 35.28 ? C11 GGY 1280 A 1 
HETATM 12 C C12 GGY . . . B 2 3.51 -7.872 12.223 1 37.01 ? C12 GGY 1280 A 1 
HETATM 13 C C13 GGY . . . B 2 2.85 -7.553 10.859 1 26.55 ? C13 GGY 1280 A 1 
HETATM 14 C C14 GGY . . . B 2 2.201 -8.577 10.144 1 29.05 ? C14 GGY 1280 A 1 
HETATM 15 C C15 GGY . . . B 2 1.603 -8.264 8.896 1 25.08 ? C15 GGY 1280 A 1 
HETATM 16 C C16 GGY . . . B 2 0.905 -9.317 8.106 1 29.1 ? C16 GGY 1280 A 1 
HETATM 17 C C17 GGY . . . B 2 0.308 -9.176 6.814 1 23.87 ? C17 GGY 1280 A 1 
HETATM 18 C C18 GGY . . . B 2 -0.308 -10.396 6.287 1 31.38 ? C18 GGY 1280 A 1 
HETATM 19 C C19 GGY . . . B 2 -1.006 -10.471 4.919 1 44.46 ? C19 GGY 1280 A 1 
HETATM 20 N N20 GGY . . . B 2 -1.586 -9.234 4.382 1 54.33 ? N20 GGY 1280 A 1 
HETATM 21 C C21 GGY . . . B 2 -1.668 -9.312 2.934 1 47.6 ? C21 GGY 1280 A 1 
HETATM 22 C C22 GGY . . . B 2 -2.957 -9.032 4.947 1 38.23 ? C22 GGY 1280 A 1 
HETATM 23 C C23 GGY . . . B 2 -0.196 -11.514 7.174 1 31.42 ? C23 GGY 1280 A 1 
HETATM 24 S S24 GGY . . . B 2 0.652 -10.954 8.559 1 45.21 ? S24 GGY 1280 A 1 
HETATM 25 C C25 GGY . . . B 2 1.68 -6.966 8.428 1 22.51 ? C25 GGY 1280 A 1 
HETATM 26 N N26 GGY . . . B 2 2.311 -6.004 9.138 1 23.35 ? N26 GGY 1280 A 1 
HETATM 27 C C27 GGY . . . B 2 2.893 -6.271 10.336 1 23.43 ? C27 GGY 1280 A 1 
HETATM 28 N N28 GGY . . . B 2 3.541 -5.215 11.033 1 24.55 ? N28 GGY 1280 A 1 
HETATM 29 C C29 GGY . . . B 2 4.874 -7.516 12.467 1 30.46 ? C29 GGY 1280 A 1 
HETATM 30 C C30 GGY . . . B 2 5.457 -7.805 13.691 1 26.74 ? C30 GGY 1280 A 1 
HETATM 31 C C31 GGY . . . B 2 4.728 -8.439 14.687 1 34.77 ? C31 GGY 1280 A 1 
HETATM 32 C C32 GGY . . . B 2 5.375 -8.746 16.008 1 41.7 ? C32 GGY 1280 A 1 
HETATM 33 N N33 GGY . . . B 2 4.918 -9.869 16.831 1 51 ? N33 GGY 1280 A 1 
HETATM 34 O O34 GGY . . . B 2 6.288 -8.065 16.415 1 37.76 ? O34 GGY 1280 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#