data_4AFZ
#
_model_server_result.job_id            WpfriLphixpcMExGYc4NZQ 
_model_server_result.datetime_utc      '2024-11-25 02:39:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4afz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1227}' 
#
_entry.id    4AFZ 
#
_exptl.entry_id    4AFZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.087 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'D(-)-TARTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.76 
_cell.angle_gamma         90 
_cell.entry_id            4AFZ 
_cell.length_a            60.269 
_cell.length_b            58.341 
_cell.length_c            93.032 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AFZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,H 1 1 
B,D,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 46 A CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
disulf ? disulf2 A SG CYS 123 A CYS 123 1_555 A SG CYS 188 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf3 A SG CYS 154 A CYS 154 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
disulf ? disulf4 B SG CYS 30 B CYS 30 1_555 B SG CYS 46 B CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf5 B SG CYS 123 B CYS 123 1_555 B SG CYS 188 B CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 B SG CYS 154 B CYS 154 1_555 B SG CYS 167 B CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
#
_chem_comp.formula           'C4 H6 O6' 
_chem_comp.formula_weight    150.087 
_chem_comp.id                TAR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'D(-)-TARTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 TAR doub 290 n n 
O11 C1 TAR sing 291 n n 
O11 HO1 TAR sing 292 n n 
C1 C2 TAR sing 293 n n 
C2 O2 TAR sing 294 n n 
C2 C3 TAR sing 295 n n 
C2 H2 TAR sing 296 n n 
O2 HO2 TAR sing 297 n n 
C3 O3 TAR sing 298 n n 
C3 C4 TAR sing 299 n n 
C3 H3 TAR sing 300 n n 
O3 HO3 TAR sing 301 n n 
C4 O4 TAR doub 302 n n 
C4 O41 TAR sing 303 n n 
O41 HO4 TAR sing 304 n n 
#
_atom_sites.entry_id                     4AFZ 
_atom_sites.fract_transf_matrix[1][1]    0.016592 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004063 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017141 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011067 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 TAR A 1 1227 1227 TAR TAR . 
F 4 HOH A 1 2001 2001 HOH HOH . 
F 4 HOH A 2 2002 2002 HOH HOH . 
F 4 HOH A 3 2003 2003 HOH HOH . 
F 4 HOH A 4 2004 2004 HOH HOH . 
F 4 HOH A 5 2005 2005 HOH HOH . 
F 4 HOH A 6 2006 2006 HOH HOH . 
F 4 HOH A 7 2007 2007 HOH HOH . 
F 4 HOH A 8 2008 2008 HOH HOH . 
F 4 HOH A 9 2009 2009 HOH HOH . 
F 4 HOH A 10 2010 2010 HOH HOH . 
F 4 HOH A 11 2011 2011 HOH HOH . 
F 4 HOH A 12 2012 2012 HOH HOH . 
F 4 HOH A 13 2013 2013 HOH HOH . 
F 4 HOH A 14 2014 2014 HOH HOH . 
F 4 HOH A 15 2015 2015 HOH HOH . 
F 4 HOH A 16 2016 2016 HOH HOH . 
F 4 HOH A 17 2017 2017 HOH HOH . 
F 4 HOH A 18 2018 2018 HOH HOH . 
F 4 HOH A 19 2019 2019 HOH HOH . 
F 4 HOH A 20 2020 2020 HOH HOH . 
F 4 HOH A 21 2021 2021 HOH HOH . 
F 4 HOH A 22 2022 2022 HOH HOH . 
F 4 HOH A 23 2023 2023 HOH HOH . 
F 4 HOH A 24 2024 2024 HOH HOH . 
F 4 HOH A 25 2025 2025 HOH HOH . 
F 4 HOH A 26 2026 2026 HOH HOH . 
F 4 HOH A 27 2027 2027 HOH HOH . 
F 4 HOH A 28 2028 2028 HOH HOH . 
F 4 HOH A 29 2029 2029 HOH HOH . 
F 4 HOH A 30 2030 2030 HOH HOH . 
F 4 HOH A 31 2031 2031 HOH HOH . 
F 4 HOH A 32 2032 2032 HOH HOH . 
F 4 HOH A 33 2033 2033 HOH HOH . 
F 4 HOH A 34 2034 2034 HOH HOH . 
F 4 HOH A 35 2035 2035 HOH HOH . 
F 4 HOH A 36 2036 2036 HOH HOH . 
F 4 HOH A 37 2037 2037 HOH HOH . 
F 4 HOH A 38 2038 2038 HOH HOH . 
F 4 HOH A 39 2039 2039 HOH HOH . 
F 4 HOH A 40 2040 2040 HOH HOH . 
F 4 HOH A 41 2041 2041 HOH HOH . 
F 4 HOH A 42 2042 2042 HOH HOH . 
F 4 HOH A 43 2043 2043 HOH HOH . 
F 4 HOH A 44 2044 2044 HOH HOH . 
F 4 HOH A 45 2045 2045 HOH HOH . 
F 4 HOH A 46 2046 2046 HOH HOH . 
F 4 HOH A 47 2047 2047 HOH HOH . 
F 4 HOH A 48 2048 2048 HOH HOH . 
F 4 HOH A 49 2049 2049 HOH HOH . 
F 4 HOH A 50 2050 2050 HOH HOH . 
F 4 HOH A 51 2051 2051 HOH HOH . 
F 4 HOH A 52 2052 2052 HOH HOH . 
F 4 HOH A 53 2053 2053 HOH HOH . 
F 4 HOH A 54 2054 2054 HOH HOH . 
F 4 HOH A 55 2055 2055 HOH HOH . 
F 4 HOH A 56 2056 2056 HOH HOH . 
F 4 HOH A 57 2057 2057 HOH HOH . 
F 4 HOH A 58 2058 2058 HOH HOH . 
F 4 HOH A 59 2059 2059 HOH HOH . 
F 4 HOH A 60 2060 2060 HOH HOH . 
F 4 HOH A 61 2061 2061 HOH HOH . 
F 4 HOH A 62 2062 2062 HOH HOH . 
F 4 HOH A 63 2063 2063 HOH HOH . 
F 4 HOH A 64 2064 2064 HOH HOH . 
F 4 HOH A 65 2065 2065 HOH HOH . 
F 4 HOH A 66 2066 2066 HOH HOH . 
F 4 HOH A 67 2067 2067 HOH HOH . 
F 4 HOH A 68 2068 2068 HOH HOH . 
F 4 HOH A 69 2069 2069 HOH HOH . 
F 4 HOH A 70 2070 2070 HOH HOH . 
F 4 HOH A 71 2071 2071 HOH HOH . 
F 4 HOH A 72 2072 2072 HOH HOH . 
F 4 HOH A 73 2073 2073 HOH HOH . 
F 4 HOH A 74 2074 2074 HOH HOH . 
F 4 HOH A 75 2075 2075 HOH HOH . 
F 4 HOH A 76 2076 2076 HOH HOH . 
F 4 HOH A 77 2077 2077 HOH HOH . 
F 4 HOH A 78 2078 2078 HOH HOH . 
F 4 HOH A 79 2079 2079 HOH HOH . 
F 4 HOH A 80 2080 2080 HOH HOH . 
F 4 HOH A 81 2081 2081 HOH HOH . 
F 4 HOH A 82 2082 2082 HOH HOH . 
F 4 HOH A 83 2083 2083 HOH HOH . 
F 4 HOH A 84 2084 2084 HOH HOH . 
F 4 HOH A 85 2085 2085 HOH HOH . 
F 4 HOH A 86 2086 2086 HOH HOH . 
F 4 HOH A 87 2087 2087 HOH HOH . 
F 4 HOH A 88 2088 2088 HOH HOH . 
F 4 HOH A 89 2089 2089 HOH HOH . 
F 4 HOH A 90 2090 2090 HOH HOH . 
F 4 HOH A 91 2091 2091 HOH HOH . 
F 4 HOH A 92 2092 2092 HOH HOH . 
F 4 HOH A 93 2093 2093 HOH HOH . 
F 4 HOH A 94 2094 2094 HOH HOH . 
F 4 HOH A 95 2095 2095 HOH HOH . 
F 4 HOH A 96 2096 2096 HOH HOH . 
F 4 HOH A 97 2097 2097 HOH HOH . 
G 4 HOH B 1 2001 2001 HOH HOH . 
G 4 HOH B 2 2002 2002 HOH HOH . 
G 4 HOH B 3 2003 2003 HOH HOH . 
G 4 HOH B 4 2004 2004 HOH HOH . 
G 4 HOH B 5 2005 2005 HOH HOH . 
G 4 HOH B 6 2006 2006 HOH HOH . 
G 4 HOH B 7 2007 2007 HOH HOH . 
G 4 HOH B 8 2008 2008 HOH HOH . 
G 4 HOH B 9 2009 2009 HOH HOH . 
G 4 HOH B 10 2010 2010 HOH HOH . 
G 4 HOH B 11 2011 2011 HOH HOH . 
G 4 HOH B 12 2012 2012 HOH HOH . 
G 4 HOH B 13 2013 2013 HOH HOH . 
G 4 HOH B 14 2014 2014 HOH HOH . 
G 4 HOH B 15 2015 2015 HOH HOH . 
G 4 HOH B 16 2016 2016 HOH HOH . 
G 4 HOH B 17 2017 2017 HOH HOH . 
G 4 HOH B 18 2018 2018 HOH HOH . 
G 4 HOH B 19 2019 2019 HOH HOH . 
G 4 HOH B 20 2020 2020 HOH HOH . 
G 4 HOH B 21 2021 2021 HOH HOH . 
G 4 HOH B 22 2022 2022 HOH HOH . 
G 4 HOH B 23 2023 2023 HOH HOH . 
G 4 HOH B 24 2024 2024 HOH HOH . 
G 4 HOH B 25 2025 2025 HOH HOH . 
G 4 HOH B 26 2026 2026 HOH HOH . 
G 4 HOH B 27 2027 2027 HOH HOH . 
G 4 HOH B 28 2028 2028 HOH HOH . 
G 4 HOH B 29 2029 2029 HOH HOH . 
G 4 HOH B 30 2030 2030 HOH HOH . 
G 4 HOH B 31 2031 2031 HOH HOH . 
G 4 HOH B 32 2032 2032 HOH HOH . 
G 4 HOH B 33 2033 2033 HOH HOH . 
G 4 HOH B 34 2034 2034 HOH HOH . 
G 4 HOH B 35 2035 2035 HOH HOH . 
G 4 HOH B 36 2036 2036 HOH HOH . 
G 4 HOH B 37 2037 2037 HOH HOH . 
G 4 HOH B 38 2038 2038 HOH HOH . 
G 4 HOH B 39 2039 2039 HOH HOH . 
G 4 HOH B 40 2040 2040 HOH HOH . 
G 4 HOH B 41 2041 2041 HOH HOH . 
G 4 HOH B 42 2042 2042 HOH HOH . 
G 4 HOH B 43 2043 2043 HOH HOH . 
G 4 HOH B 44 2044 2044 HOH HOH . 
G 4 HOH B 45 2045 2045 HOH HOH . 
G 4 HOH B 46 2046 2046 HOH HOH . 
H 4 HOH C 1 2001 2001 HOH HOH . 
H 4 HOH C 2 2002 2002 HOH HOH . 
H 4 HOH C 3 2003 2003 HOH HOH . 
H 4 HOH C 4 2004 2004 HOH HOH . 
H 4 HOH C 5 2005 2005 HOH HOH . 
H 4 HOH C 6 2006 2006 HOH HOH . 
H 4 HOH C 7 2007 2007 HOH HOH . 
H 4 HOH C 8 2008 2008 HOH HOH . 
H 4 HOH C 9 2009 2009 HOH HOH . 
H 4 HOH C 10 2010 2010 HOH HOH . 
H 4 HOH C 11 2011 2011 HOH HOH . 
H 4 HOH C 12 2012 2012 HOH HOH . 
H 4 HOH C 13 2013 2013 HOH HOH . 
H 4 HOH C 14 2014 2014 HOH HOH . 
H 4 HOH C 15 2015 2015 HOH HOH . 
H 4 HOH C 16 2016 2016 HOH HOH . 
H 4 HOH C 17 2017 2017 HOH HOH . 
H 4 HOH C 18 2018 2018 HOH HOH . 
H 4 HOH C 19 2019 2019 HOH HOH . 
H 4 HOH C 20 2020 2020 HOH HOH . 
H 4 HOH C 21 2021 2021 HOH HOH . 
H 4 HOH C 22 2022 2022 HOH HOH . 
I 4 HOH D 1 2001 2001 HOH HOH . 
I 4 HOH D 2 2002 2002 HOH HOH . 
I 4 HOH D 3 2003 2003 HOH HOH . 
I 4 HOH D 4 2004 2004 HOH HOH . 
I 4 HOH D 5 2005 2005 HOH HOH . 
I 4 HOH D 6 2006 2006 HOH HOH . 
I 4 HOH D 7 2007 2007 HOH HOH . 
I 4 HOH D 8 2008 2008 HOH HOH . 
I 4 HOH D 9 2009 2009 HOH HOH . 
I 4 HOH D 10 2010 2010 HOH HOH . 
I 4 HOH D 11 2011 2011 HOH HOH . 
I 4 HOH D 12 2012 2012 HOH HOH . 
I 4 HOH D 13 2013 2013 HOH HOH . 
I 4 HOH D 14 2014 2014 HOH HOH . 
I 4 HOH D 15 2015 2015 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 TAR . . . E 3 -7.282 4.952 -42.964 1 46.92 ? O1 TAR 1227 A 1 
HETATM 2 O O11 TAR . . . E 3 -6.078 4.063 -44.625 1 48.25 ? O11 TAR 1227 A 1 
HETATM 3 C C1 TAR . . . E 3 -7.108 4.627 -44.171 1 61.21 ? C1 TAR 1227 A 1 
HETATM 4 C C2 TAR . . . E 3 -8.214 4.967 -45.149 1 66.13 ? C2 TAR 1227 A 1 
HETATM 5 O O2 TAR . . . E 3 -7.656 5.437 -46.387 1 72.02 ? O2 TAR 1227 A 1 
HETATM 6 C C3 TAR . . . E 3 -9.157 3.791 -45.399 1 70.95 ? C3 TAR 1227 A 1 
HETATM 7 O O3 TAR . . . E 3 -8.407 2.572 -45.518 1 70.95 ? O3 TAR 1227 A 1 
HETATM 8 C C4 TAR . . . E 3 -9.97 4.06 -46.642 1 78.34 ? C4 TAR 1227 A 1 
HETATM 9 O O4 TAR . . . E 3 -9.415 3.872 -47.757 1 80.79 ? O4 TAR 1227 A 1 
HETATM 10 O O41 TAR . . . E 3 -11.16 4.469 -46.513 1 73.57 ? O41 TAR 1227 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           10 
#