data_4AGC # _model_server_result.job_id hx-sdkTbHs9_vhIJxh5A3w _model_server_result.datetime_utc '2024-10-10 13:31:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4agc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2000}' # _entry.id 4AGC # _exptl.entry_id 4AGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.47 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description AXITINIB _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.12 _cell.angle_gamma 90 _cell.entry_id 4AGC _cell.length_a 139.492 _cell.length_b 56.922 _cell.length_c 50.787 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H18 N4 O S' _chem_comp.formula_weight 386.47 _chem_comp.id AXI _chem_comp.mon_nstd_flag . _chem_comp.name AXITINIB _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-METHYL-2-(3-((E)-2-PYRIDIN-2-YL-VINYL)-1H-INDAZOL-6-YLSULFANYL)-BENZAMIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O81 C80 AXI doub 70 n n C80 N82 AXI sing 71 n n C80 C23 AXI sing 72 n n N82 C88 AXI sing 73 n n C23 C22 AXI sing 74 n y C23 C18 AXI doub 75 n y C22 C21 AXI doub 76 n y C21 C20 AXI sing 77 n y C20 C19 AXI doub 78 n y C18 C19 AXI sing 79 n y C18 S24 AXI sing 80 n n S24 C07 AXI sing 81 n n C07 C08 AXI sing 82 n y C07 C12 AXI doub 83 n y C08 C09 AXI doub 84 n y C09 C10 AXI sing 85 n y C12 C11 AXI sing 86 n y C11 N15 AXI sing 87 n y C11 C10 AXI doub 88 n y N15 N14 AXI sing 89 n y N14 C13 AXI doub 90 n y C13 C10 AXI sing 91 n y C13 C16 AXI sing 92 n n C16 C17 AXI doub 93 e n C17 C02 AXI sing 94 n n C02 N03 AXI doub 95 n y C02 C01 AXI sing 96 n y N03 C04 AXI sing 97 n y C04 C05 AXI doub 98 n y C05 C06 AXI sing 99 n y C06 C01 AXI doub 100 n y N82 H82 AXI sing 101 n n C88 H881 AXI sing 102 n n C88 H882 AXI sing 103 n n C88 H883 AXI sing 104 n n C22 H22 AXI sing 105 n n C21 H21 AXI sing 106 n n C20 H20 AXI sing 107 n n C19 H19 AXI sing 108 n n C08 H08 AXI sing 109 n n C12 H12 AXI sing 110 n n C09 H09 AXI sing 111 n n C16 H16 AXI sing 112 n n C17 H17 AXI sing 113 n n C01 H01 AXI sing 114 n n C04 H04 AXI sing 115 n n C05 H05 AXI sing 116 n n C06 H06 AXI sing 117 n n N15 H1 AXI sing 118 n n # _atom_sites.entry_id 4AGC _atom_sites.fract_transf_matrix[1][1] 0.007169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000895 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AXI A 1 2000 2000 AXI AXI . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . C 3 HOH A 105 2105 2105 HOH HOH . C 3 HOH A 106 2106 2106 HOH HOH . C 3 HOH A 107 2107 2107 HOH HOH . C 3 HOH A 108 2108 2108 HOH HOH . C 3 HOH A 109 2109 2109 HOH HOH . C 3 HOH A 110 2110 2110 HOH HOH . C 3 HOH A 111 2111 2111 HOH HOH . C 3 HOH A 112 2112 2112 HOH HOH . C 3 HOH A 113 2113 2113 HOH HOH . C 3 HOH A 114 2114 2114 HOH HOH . C 3 HOH A 115 2115 2115 HOH HOH . C 3 HOH A 116 2116 2116 HOH HOH . C 3 HOH A 117 2117 2117 HOH HOH . C 3 HOH A 118 2118 2118 HOH HOH . C 3 HOH A 119 2119 2119 HOH HOH . C 3 HOH A 120 2120 2120 HOH HOH . C 3 HOH A 121 2121 2121 HOH HOH . C 3 HOH A 122 2122 2122 HOH HOH . C 3 HOH A 123 2123 2123 HOH HOH . C 3 HOH A 124 2124 2124 HOH HOH . C 3 HOH A 125 2125 2125 HOH HOH . C 3 HOH A 126 2126 2126 HOH HOH . C 3 HOH A 127 2127 2127 HOH HOH . C 3 HOH A 128 2128 2128 HOH HOH . C 3 HOH A 129 2129 2129 HOH HOH . C 3 HOH A 130 2130 2130 HOH HOH . C 3 HOH A 131 2131 2131 HOH HOH . C 3 HOH A 132 2132 2132 HOH HOH . C 3 HOH A 133 2133 2133 HOH HOH . C 3 HOH A 134 2134 2134 HOH HOH . C 3 HOH A 135 2135 2135 HOH HOH . C 3 HOH A 136 2136 2136 HOH HOH . C 3 HOH A 137 2137 2137 HOH HOH . C 3 HOH A 138 2138 2138 HOH HOH . C 3 HOH A 139 2139 2139 HOH HOH . C 3 HOH A 140 2140 2140 HOH HOH . C 3 HOH A 141 2141 2141 HOH HOH . C 3 HOH A 142 2142 2142 HOH HOH . C 3 HOH A 143 2143 2143 HOH HOH . C 3 HOH A 144 2144 2144 HOH HOH . C 3 HOH A 145 2145 2145 HOH HOH . C 3 HOH A 146 2146 2146 HOH HOH . C 3 HOH A 147 2147 2147 HOH HOH . C 3 HOH A 148 2148 2148 HOH HOH . C 3 HOH A 149 2149 2149 HOH HOH . C 3 HOH A 150 2150 2150 HOH HOH . C 3 HOH A 151 2151 2151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O81 AXI . . . B 2 -26.05 -1.54 -9.129 1 32.47 ? O81 AXI 2000 A 1 HETATM 2 C C80 AXI . . . B 2 -26.813 -2.112 -9.925 1 30.83 ? C80 AXI 2000 A 1 HETATM 3 N N82 AXI . . . B 2 -27.794 -2.903 -9.473 1 32.3 ? N82 AXI 2000 A 1 HETATM 4 C C88 AXI . . . B 2 -28.062 -3.167 -8.066 1 34.3 ? C88 AXI 2000 A 1 HETATM 5 C C23 AXI . . . B 2 -26.661 -1.921 -11.407 1 27.52 ? C23 AXI 2000 A 1 HETATM 6 C C22 AXI . . . B 2 -27.843 -2.016 -12.228 1 28.52 ? C22 AXI 2000 A 1 HETATM 7 C C21 AXI . . . B 2 -27.785 -1.845 -13.635 1 25.89 ? C21 AXI 2000 A 1 HETATM 8 C C20 AXI . . . B 2 -26.539 -1.573 -14.263 1 30.08 ? C20 AXI 2000 A 1 HETATM 9 C C18 AXI . . . B 2 -25.398 -1.648 -12.044 1 27.61 ? C18 AXI 2000 A 1 HETATM 10 C C19 AXI . . . B 2 -25.362 -1.478 -13.474 1 29.3 ? C19 AXI 2000 A 1 HETATM 11 S S24 AXI . . . B 2 -23.902 -1.516 -11.133 1 30.16 ? S24 AXI 2000 A 1 HETATM 12 C C07 AXI . . . B 2 -22.959 -0.27 -11.905 1 29.58 ? C07 AXI 2000 A 1 HETATM 13 C C08 AXI . . . B 2 -21.591 -0.542 -12.267 1 28.73 ? C08 AXI 2000 A 1 HETATM 14 C C09 AXI . . . B 2 -20.775 0.457 -12.895 1 27.95 ? C09 AXI 2000 A 1 HETATM 15 C C12 AXI . . . B 2 -23.512 1.033 -12.184 1 29.9 ? C12 AXI 2000 A 1 HETATM 16 C C11 AXI . . . B 2 -22.684 2.004 -12.808 1 29.99 ? C11 AXI 2000 A 1 HETATM 17 N N15 AXI . . . B 2 -22.918 3.313 -13.193 1 30.45 ? N15 AXI 2000 A 1 HETATM 18 N N14 AXI . . . B 2 -21.872 3.847 -13.731 1 30.84 ? N14 AXI 2000 A 1 HETATM 19 C C13 AXI . . . B 2 -20.895 3.007 -13.759 1 30.52 ? C13 AXI 2000 A 1 HETATM 20 C C10 AXI . . . B 2 -21.364 1.741 -13.156 1 28.77 ? C10 AXI 2000 A 1 HETATM 21 C C16 AXI . . . B 2 -19.565 3.359 -14.326 1 31.23 ? C16 AXI 2000 A 1 HETATM 22 C C17 AXI . . . B 2 -18.334 2.766 -13.999 1 32.22 ? C17 AXI 2000 A 1 HETATM 23 C C02 AXI . . . B 2 -17.005 3.15 -14.572 1 36.06 ? C02 AXI 2000 A 1 HETATM 24 N N03 AXI . . . B 2 -16.098 2.14 -14.754 1 36.39 ? N03 AXI 2000 A 1 HETATM 25 C C04 AXI . . . B 2 -14.863 2.437 -15.268 1 36.38 ? C04 AXI 2000 A 1 HETATM 26 C C05 AXI . . . B 2 -14.473 3.76 -15.624 1 37.01 ? C05 AXI 2000 A 1 HETATM 27 C C06 AXI . . . B 2 -15.411 4.817 -15.437 1 37.3 ? C06 AXI 2000 A 1 HETATM 28 C C01 AXI . . . B 2 -16.698 4.518 -14.905 1 35.47 ? C01 AXI 2000 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #