data_4AI8
#
_model_server_result.job_id            TWvLzK8Xr1J1AvxicI6bLA 
_model_server_result.datetime_utc      '2024-11-04 23:01:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ai8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1358}' 
#
_entry.id    4AI8 
#
_exptl.entry_id    4AI8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              160.171 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DAMINOZIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4AI8 
_cell.length_a            86.757 
_cell.length_b            86.757 
_cell.length_c            145.481 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AI8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 86.757 86.757 72.7405 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 202 A HIS 199 1_555 K ZN ZN . A ZN 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc2 A OD2 ASP 204 A ASP 201 1_555 K ZN ZN . A ZN 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc3 A NE2 HIS 282 A HIS 279 1_555 K ZN ZN . A ZN 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc4 J O01 DZA . A DZA 1358 1_555 K ZN ZN . A ZN 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc5 J N04 DZA . A DZA 1358 1_555 K ZN ZN . A ZN 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc6 K ZN ZN . A ZN 1359 1_555 L O HOH . A HOH 2073 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
#
_chem_comp.formula           'C6 H12 N2 O3' 
_chem_comp.formula_weight    160.171 
_chem_comp.id                DZA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DAMINOZIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O10 C09 DZA sing 83 n n 
C09 O11 DZA doub 84 n n 
C09 C08 DZA sing 85 n n 
C08 C07 DZA sing 86 n n 
C07 C02 DZA sing 87 n n 
C02 O01 DZA doub 88 n n 
C02 N03 DZA sing 89 n n 
N03 N04 DZA sing 90 n n 
N04 C06 DZA sing 91 n n 
N04 C05 DZA sing 92 n n 
O10 H10 DZA sing 93 n n 
C08 H081 DZA sing 94 n n 
C08 H082 DZA sing 95 n n 
C07 H071 DZA sing 96 n n 
C07 H072 DZA sing 97 n n 
N03 H03 DZA sing 98 n n 
C06 H061 DZA sing 99 n n 
C06 H062 DZA sing 100 n n 
C06 H063 DZA sing 101 n n 
C05 H051 DZA sing 102 n n 
C05 H052 DZA sing 103 n n 
C05 H053 DZA sing 104 n n 
#
_atom_sites.entry_id                     4AI8 
_atom_sites.fract_transf_matrix[1][1]    0.011526 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011526 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006874 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1350 1350 SO4 SO4 . 
C 2 SO4 A 1 1351 1351 SO4 SO4 . 
D 2 SO4 A 1 1352 1352 SO4 SO4 . 
E 2 SO4 A 1 1353 1353 SO4 SO4 . 
F 2 SO4 A 1 1354 1354 SO4 SO4 . 
G 3 GOL A 1 1355 1355 GOL GOL . 
H 3 GOL A 1 1356 1356 GOL GOL . 
I 3 GOL A 1 1357 1357 GOL GOL . 
J 4 DZA A 1 1358 1358 DZA DZA . 
K 5 ZN A 1 1359 1359 ZN ZN . 
L 6 HOH A 1 2001 2001 HOH HOH . 
L 6 HOH A 2 2002 2002 HOH HOH . 
L 6 HOH A 3 2003 2003 HOH HOH . 
L 6 HOH A 4 2004 2004 HOH HOH . 
L 6 HOH A 5 2005 2005 HOH HOH . 
L 6 HOH A 6 2006 2006 HOH HOH . 
L 6 HOH A 7 2007 2007 HOH HOH . 
L 6 HOH A 8 2008 2008 HOH HOH . 
L 6 HOH A 9 2009 2009 HOH HOH . 
L 6 HOH A 10 2010 2010 HOH HOH . 
L 6 HOH A 11 2011 2011 HOH HOH . 
L 6 HOH A 12 2012 2012 HOH HOH . 
L 6 HOH A 13 2013 2013 HOH HOH . 
L 6 HOH A 14 2014 2014 HOH HOH . 
L 6 HOH A 15 2015 2015 HOH HOH . 
L 6 HOH A 16 2016 2016 HOH HOH . 
L 6 HOH A 17 2017 2017 HOH HOH . 
L 6 HOH A 18 2018 2018 HOH HOH . 
L 6 HOH A 19 2019 2019 HOH HOH . 
L 6 HOH A 20 2020 2020 HOH HOH . 
L 6 HOH A 21 2021 2021 HOH HOH . 
L 6 HOH A 22 2022 2022 HOH HOH . 
L 6 HOH A 23 2023 2023 HOH HOH . 
L 6 HOH A 24 2024 2024 HOH HOH . 
L 6 HOH A 25 2025 2025 HOH HOH . 
L 6 HOH A 26 2026 2026 HOH HOH . 
L 6 HOH A 27 2027 2027 HOH HOH . 
L 6 HOH A 28 2028 2028 HOH HOH . 
L 6 HOH A 29 2029 2029 HOH HOH . 
L 6 HOH A 30 2030 2030 HOH HOH . 
L 6 HOH A 31 2031 2031 HOH HOH . 
L 6 HOH A 32 2032 2032 HOH HOH . 
L 6 HOH A 33 2033 2033 HOH HOH . 
L 6 HOH A 34 2034 2034 HOH HOH . 
L 6 HOH A 35 2035 2035 HOH HOH . 
L 6 HOH A 36 2036 2036 HOH HOH . 
L 6 HOH A 37 2037 2037 HOH HOH . 
L 6 HOH A 38 2038 2038 HOH HOH . 
L 6 HOH A 39 2039 2039 HOH HOH . 
L 6 HOH A 40 2040 2040 HOH HOH . 
L 6 HOH A 41 2041 2041 HOH HOH . 
L 6 HOH A 42 2042 2042 HOH HOH . 
L 6 HOH A 43 2043 2043 HOH HOH . 
L 6 HOH A 44 2044 2044 HOH HOH . 
L 6 HOH A 45 2045 2045 HOH HOH . 
L 6 HOH A 46 2046 2046 HOH HOH . 
L 6 HOH A 47 2047 2047 HOH HOH . 
L 6 HOH A 48 2048 2048 HOH HOH . 
L 6 HOH A 49 2049 2049 HOH HOH . 
L 6 HOH A 50 2050 2050 HOH HOH . 
L 6 HOH A 51 2051 2051 HOH HOH . 
L 6 HOH A 52 2052 2052 HOH HOH . 
L 6 HOH A 53 2053 2053 HOH HOH . 
L 6 HOH A 54 2054 2054 HOH HOH . 
L 6 HOH A 55 2055 2055 HOH HOH . 
L 6 HOH A 56 2056 2056 HOH HOH . 
L 6 HOH A 57 2057 2057 HOH HOH . 
L 6 HOH A 58 2058 2058 HOH HOH . 
L 6 HOH A 59 2059 2059 HOH HOH . 
L 6 HOH A 60 2060 2060 HOH HOH . 
L 6 HOH A 61 2061 2061 HOH HOH . 
L 6 HOH A 62 2062 2062 HOH HOH . 
L 6 HOH A 63 2063 2063 HOH HOH . 
L 6 HOH A 64 2064 2064 HOH HOH . 
L 6 HOH A 65 2065 2065 HOH HOH . 
L 6 HOH A 66 2066 2066 HOH HOH . 
L 6 HOH A 67 2067 2067 HOH HOH . 
L 6 HOH A 68 2068 2068 HOH HOH . 
L 6 HOH A 69 2069 2069 HOH HOH . 
L 6 HOH A 70 2070 2070 HOH HOH . 
L 6 HOH A 71 2071 2071 HOH HOH . 
L 6 HOH A 72 2072 2072 HOH HOH . 
L 6 HOH A 73 2073 2073 HOH HOH . 
L 6 HOH A 74 2074 2074 HOH HOH . 
L 6 HOH A 75 2075 2075 HOH HOH . 
L 6 HOH A 76 2076 2076 HOH HOH . 
L 6 HOH A 77 2077 2077 HOH HOH . 
L 6 HOH A 78 2078 2078 HOH HOH . 
L 6 HOH A 79 2079 2079 HOH HOH . 
L 6 HOH A 80 2080 2080 HOH HOH . 
L 6 HOH A 81 2081 2081 HOH HOH . 
L 6 HOH A 82 2082 2082 HOH HOH . 
L 6 HOH A 83 2083 2083 HOH HOH . 
L 6 HOH A 84 2084 2084 HOH HOH . 
L 6 HOH A 85 2085 2085 HOH HOH . 
L 6 HOH A 86 2086 2086 HOH HOH . 
L 6 HOH A 87 2087 2087 HOH HOH . 
L 6 HOH A 88 2088 2088 HOH HOH . 
L 6 HOH A 89 2089 2089 HOH HOH . 
L 6 HOH A 90 2090 2090 HOH HOH . 
L 6 HOH A 91 2091 2091 HOH HOH . 
L 6 HOH A 92 2092 2092 HOH HOH . 
L 6 HOH A 93 2093 2093 HOH HOH . 
L 6 HOH A 94 2094 2094 HOH HOH . 
L 6 HOH A 95 2095 2095 HOH HOH . 
L 6 HOH A 96 2096 2096 HOH HOH . 
L 6 HOH A 97 2097 2097 HOH HOH . 
L 6 HOH A 98 2098 2098 HOH HOH . 
L 6 HOH A 99 2099 2099 HOH HOH . 
L 6 HOH A 100 2100 2100 HOH HOH . 
L 6 HOH A 101 2101 2101 HOH HOH . 
L 6 HOH A 102 2102 2102 HOH HOH . 
L 6 HOH A 103 2103 2103 HOH HOH . 
L 6 HOH A 104 2104 2104 HOH HOH . 
L 6 HOH A 105 2105 2105 HOH HOH . 
L 6 HOH A 106 2106 2106 HOH HOH . 
L 6 HOH A 107 2107 2107 HOH HOH . 
L 6 HOH A 108 2108 2108 HOH HOH . 
L 6 HOH A 109 2109 2109 HOH HOH . 
L 6 HOH A 110 2110 2110 HOH HOH . 
L 6 HOH A 111 2111 2111 HOH HOH . 
L 6 HOH A 112 2112 2112 HOH HOH . 
L 6 HOH A 113 2113 2113 HOH HOH . 
L 6 HOH A 114 2114 2114 HOH HOH . 
L 6 HOH A 115 2115 2115 HOH HOH . 
L 6 HOH A 116 2116 2116 HOH HOH . 
L 6 HOH A 117 2117 2117 HOH HOH . 
L 6 HOH A 118 2118 2118 HOH HOH . 
L 6 HOH A 119 2119 2119 HOH HOH . 
L 6 HOH A 120 2120 2120 HOH HOH . 
L 6 HOH A 121 2121 2121 HOH HOH . 
L 6 HOH A 122 2122 2122 HOH HOH . 
L 6 HOH A 123 2123 2123 HOH HOH . 
L 6 HOH A 124 2124 2124 HOH HOH . 
L 6 HOH A 125 2125 2125 HOH HOH . 
L 6 HOH A 126 2126 2126 HOH HOH . 
L 6 HOH A 127 2127 2127 HOH HOH . 
L 6 HOH A 128 2128 2128 HOH HOH . 
L 6 HOH A 129 2129 2129 HOH HOH . 
L 6 HOH A 130 2130 2130 HOH HOH . 
L 6 HOH A 131 2131 2131 HOH HOH . 
L 6 HOH A 132 2132 2132 HOH HOH . 
L 6 HOH A 133 2133 2133 HOH HOH . 
L 6 HOH A 134 2134 2134 HOH HOH . 
L 6 HOH A 135 2135 2135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O10 DZA . . . J 4 17.901 24.417 27.721 1 47.21 ? O10 DZA 1358 A 1 
HETATM 2 C C09 DZA . . . J 4 18.034 24.942 28.843 1 46.21 ? C09 DZA 1358 A 1 
HETATM 3 O O11 DZA . . . J 4 17.122 25.324 29.585 1 47.7 ? O11 DZA 1358 A 1 
HETATM 4 C C08 DZA . . . J 4 19.364 25.64 29.156 1 42.84 ? C08 DZA 1358 A 1 
HETATM 5 C C07 DZA . . . J 4 20.401 24.74 28.503 1 42.44 ? C07 DZA 1358 A 1 
HETATM 6 C C02 DZA . . . J 4 21.703 25.55 28.518 1 44.44 ? C02 DZA 1358 A 1 
HETATM 7 O O01 DZA . . . J 4 21.787 26.679 28.94 1 41.95 ? O01 DZA 1358 A 1 
HETATM 8 N N03 DZA . . . J 4 22.733 24.863 28.005 1 45.18 ? N03 DZA 1358 A 1 
HETATM 9 N N04 DZA . . . J 4 23.706 25.424 27.999 1 46.33 ? N04 DZA 1358 A 1 
HETATM 10 C C06 DZA . . . J 4 24.539 24.578 28.865 1 45.46 ? C06 DZA 1358 A 1 
HETATM 11 C C05 DZA . . . J 4 24.098 25.521 26.579 1 45.09 ? C05 DZA 1358 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           11 
#