data_4AJR
#
_model_server_result.job_id            l4RroH0w1aGQ5VH3bokFUw 
_model_server_result.datetime_utc      '2024-10-10 07:22:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ajr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":504}' 
#
_entry.id    4AJR 
#
_exptl.entry_id    4AJR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              335.227 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4AJR 
_cell.length_a            105.788 
_cell.length_b            105.788 
_cell.length_c            145.488 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AJR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 283 A ASP 283 7_555 E MG MG . A MG 1419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
metalc ? metalc2 A OD1 ASP 307 A ASP 307 1_555 E MG MG . A MG 1419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc3 D O2 AKG . A AKG 1418 1_555 E MG MG . A MG 1419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? 
metalc ? metalc4 D O5 AKG . A AKG 1418 1_555 E MG MG . A MG 1419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc5 E MG MG . A MG 1419 1_555 F O HOH . A HOH 2051 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? 
metalc ? metalc6 E MG MG . A MG 1419 1_555 F O HOH . A HOH 2106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
#
_chem_comp.formula           'C11 H16 N2 O8 P 1' 
_chem_comp.formula_weight    335.227 
_chem_comp.id                NMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'NICOTINAMIDE MONONUCLEOTIDE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P NMN doub 332 n n 
P O1P NMN sing 333 n n 
P O2P NMN sing 334 n n 
P O5R NMN sing 335 n n 
O1P H1PO NMN sing 336 n n 
O2P H2PO NMN sing 337 n n 
O5R C5R NMN sing 338 n n 
C5R C4R NMN sing 339 n n 
C5R H5R1 NMN sing 340 n n 
C5R H5R2 NMN sing 341 n n 
C4R O4R NMN sing 342 n n 
C4R C3R NMN sing 343 n n 
C4R H4RC NMN sing 344 n n 
O4R C1R NMN sing 345 n n 
C3R O3R NMN sing 346 n n 
C3R C2R NMN sing 347 n n 
C3R H3RC NMN sing 348 n n 
O3R H3RO NMN sing 349 n n 
C2R O2R NMN sing 350 n n 
C2R C1R NMN sing 351 n n 
C2R H2RC NMN sing 352 n n 
O2R H2RO NMN sing 353 n n 
C1R N1 NMN sing 354 n n 
C1R H1RC NMN sing 355 n n 
N1 C2 NMN doub 356 n y 
N1 C6 NMN sing 357 n y 
C2 C3 NMN sing 358 n y 
C2 HC2 NMN sing 359 n n 
C3 C7 NMN sing 360 n n 
C3 C4 NMN doub 361 n y 
C7 O7 NMN doub 362 n n 
C7 N7 NMN sing 363 n n 
N7 HN71 NMN sing 364 n n 
N7 HN72 NMN sing 365 n n 
C4 C5 NMN sing 366 n y 
C4 HC4 NMN sing 367 n n 
C5 C6 NMN doub 368 n y 
C5 HC5 NMN sing 369 n n 
C6 HC6 NMN sing 370 n n 
#
_atom_sites.entry_id                     4AJR 
_atom_sites.fract_transf_matrix[1][1]    0.009453 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009453 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006873 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NMN A 1 504 504 NMN NMN . 
C 3 NAP A 1 1417 1417 NAP NAP . 
D 4 AKG A 1 1418 1418 AKG AKG . 
E 5 MG A 1 1419 1419 MG MG . 
F 6 HOH A 1 2001 2001 HOH HOH . 
F 6 HOH A 2 2002 2002 HOH HOH . 
F 6 HOH A 3 2003 2003 HOH HOH . 
F 6 HOH A 4 2004 2004 HOH HOH . 
F 6 HOH A 5 2005 2005 HOH HOH . 
F 6 HOH A 6 2006 2006 HOH HOH . 
F 6 HOH A 7 2007 2007 HOH HOH . 
F 6 HOH A 8 2008 2008 HOH HOH . 
F 6 HOH A 9 2009 2009 HOH HOH . 
F 6 HOH A 10 2010 2010 HOH HOH . 
F 6 HOH A 11 2011 2011 HOH HOH . 
F 6 HOH A 12 2012 2012 HOH HOH . 
F 6 HOH A 13 2013 2013 HOH HOH . 
F 6 HOH A 14 2014 2014 HOH HOH . 
F 6 HOH A 15 2015 2015 HOH HOH . 
F 6 HOH A 16 2016 2016 HOH HOH . 
F 6 HOH A 17 2017 2017 HOH HOH . 
F 6 HOH A 18 2018 2018 HOH HOH . 
F 6 HOH A 19 2019 2019 HOH HOH . 
F 6 HOH A 20 2020 2020 HOH HOH . 
F 6 HOH A 21 2021 2021 HOH HOH . 
F 6 HOH A 22 2022 2022 HOH HOH . 
F 6 HOH A 23 2023 2023 HOH HOH . 
F 6 HOH A 24 2024 2024 HOH HOH . 
F 6 HOH A 25 2025 2025 HOH HOH . 
F 6 HOH A 26 2026 2026 HOH HOH . 
F 6 HOH A 27 2027 2027 HOH HOH . 
F 6 HOH A 28 2028 2028 HOH HOH . 
F 6 HOH A 29 2029 2029 HOH HOH . 
F 6 HOH A 30 2030 2030 HOH HOH . 
F 6 HOH A 31 2031 2031 HOH HOH . 
F 6 HOH A 32 2032 2032 HOH HOH . 
F 6 HOH A 33 2033 2033 HOH HOH . 
F 6 HOH A 34 2034 2034 HOH HOH . 
F 6 HOH A 35 2035 2035 HOH HOH . 
F 6 HOH A 36 2036 2036 HOH HOH . 
F 6 HOH A 37 2037 2037 HOH HOH . 
F 6 HOH A 38 2038 2038 HOH HOH . 
F 6 HOH A 39 2039 2039 HOH HOH . 
F 6 HOH A 40 2040 2040 HOH HOH . 
F 6 HOH A 41 2041 2041 HOH HOH . 
F 6 HOH A 42 2042 2042 HOH HOH . 
F 6 HOH A 43 2043 2043 HOH HOH . 
F 6 HOH A 44 2044 2044 HOH HOH . 
F 6 HOH A 45 2045 2045 HOH HOH . 
F 6 HOH A 46 2046 2046 HOH HOH . 
F 6 HOH A 47 2047 2047 HOH HOH . 
F 6 HOH A 48 2048 2048 HOH HOH . 
F 6 HOH A 49 2049 2049 HOH HOH . 
F 6 HOH A 50 2050 2050 HOH HOH . 
F 6 HOH A 51 2051 2051 HOH HOH . 
F 6 HOH A 52 2052 2052 HOH HOH . 
F 6 HOH A 53 2053 2053 HOH HOH . 
F 6 HOH A 54 2054 2054 HOH HOH . 
F 6 HOH A 55 2055 2055 HOH HOH . 
F 6 HOH A 56 2056 2056 HOH HOH . 
F 6 HOH A 57 2057 2057 HOH HOH . 
F 6 HOH A 58 2058 2058 HOH HOH . 
F 6 HOH A 59 2059 2059 HOH HOH . 
F 6 HOH A 60 2060 2060 HOH HOH . 
F 6 HOH A 61 2061 2061 HOH HOH . 
F 6 HOH A 62 2062 2062 HOH HOH . 
F 6 HOH A 63 2063 2063 HOH HOH . 
F 6 HOH A 64 2064 2064 HOH HOH . 
F 6 HOH A 65 2065 2065 HOH HOH . 
F 6 HOH A 66 2066 2066 HOH HOH . 
F 6 HOH A 67 2067 2067 HOH HOH . 
F 6 HOH A 68 2068 2068 HOH HOH . 
F 6 HOH A 69 2069 2069 HOH HOH . 
F 6 HOH A 70 2070 2070 HOH HOH . 
F 6 HOH A 71 2071 2071 HOH HOH . 
F 6 HOH A 72 2072 2072 HOH HOH . 
F 6 HOH A 73 2073 2073 HOH HOH . 
F 6 HOH A 74 2074 2074 HOH HOH . 
F 6 HOH A 75 2075 2075 HOH HOH . 
F 6 HOH A 76 2076 2076 HOH HOH . 
F 6 HOH A 77 2077 2077 HOH HOH . 
F 6 HOH A 78 2078 2078 HOH HOH . 
F 6 HOH A 79 2079 2079 HOH HOH . 
F 6 HOH A 80 2080 2080 HOH HOH . 
F 6 HOH A 81 2081 2081 HOH HOH . 
F 6 HOH A 82 2082 2082 HOH HOH . 
F 6 HOH A 83 2083 2083 HOH HOH . 
F 6 HOH A 84 2084 2084 HOH HOH . 
F 6 HOH A 85 2085 2085 HOH HOH . 
F 6 HOH A 86 2086 2086 HOH HOH . 
F 6 HOH A 87 2087 2087 HOH HOH . 
F 6 HOH A 88 2088 2088 HOH HOH . 
F 6 HOH A 89 2089 2089 HOH HOH . 
F 6 HOH A 90 2090 2090 HOH HOH . 
F 6 HOH A 91 2091 2091 HOH HOH . 
F 6 HOH A 92 2092 2092 HOH HOH . 
F 6 HOH A 93 2093 2093 HOH HOH . 
F 6 HOH A 94 2094 2094 HOH HOH . 
F 6 HOH A 95 2095 2095 HOH HOH . 
F 6 HOH A 96 2096 2096 HOH HOH . 
F 6 HOH A 97 2097 2097 HOH HOH . 
F 6 HOH A 98 2098 2098 HOH HOH . 
F 6 HOH A 99 2099 2099 HOH HOH . 
F 6 HOH A 100 2100 2100 HOH HOH . 
F 6 HOH A 101 2101 2101 HOH HOH . 
F 6 HOH A 102 2102 2102 HOH HOH . 
F 6 HOH A 103 2103 2103 HOH HOH . 
F 6 HOH A 104 2104 2104 HOH HOH . 
F 6 HOH A 105 2105 2105 HOH HOH . 
F 6 HOH A 106 2106 2106 HOH HOH . 
F 6 HOH A 107 2107 2107 HOH HOH . 
F 6 HOH A 108 2108 2108 HOH HOH . 
F 6 HOH A 109 2109 2109 HOH HOH . 
F 6 HOH A 110 2110 2110 HOH HOH . 
F 6 HOH A 111 2111 2111 HOH HOH . 
F 6 HOH A 112 2112 2112 HOH HOH . 
F 6 HOH A 113 2113 2113 HOH HOH . 
F 6 HOH A 114 2114 2114 HOH HOH . 
F 6 HOH A 115 2115 2115 HOH HOH . 
F 6 HOH A 116 2116 2116 HOH HOH . 
F 6 HOH A 117 2117 2117 HOH HOH . 
F 6 HOH A 118 2118 2118 HOH HOH . 
F 6 HOH A 119 2119 2119 HOH HOH . 
F 6 HOH A 120 2120 2120 HOH HOH . 
F 6 HOH A 121 2121 2121 HOH HOH . 
F 6 HOH A 122 2122 2122 HOH HOH . 
F 6 HOH A 123 2123 2123 HOH HOH . 
F 6 HOH A 124 2124 2124 HOH HOH . 
F 6 HOH A 125 2125 2125 HOH HOH . 
F 6 HOH A 126 2126 2126 HOH HOH . 
F 6 HOH A 127 2127 2127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3P NMN . . . B 2 -38.669 -8.904 19.002 0.95 88.4 ? O3P NMN 504 A 1 
HETATM 2 P P NMN . . . B 2 -37.611 -7.915 18.653 0.95 123.2 ? P NMN 504 A 1 
HETATM 3 O O1P NMN . . . B 2 -37.206 -7.017 19.933 0.95 97.05 ? O1P NMN 504 A 1 
HETATM 4 O O2P NMN . . . B 2 -38.065 -6.946 17.441 0.95 83.96 ? O2P NMN 504 A 1 
HETATM 5 O O5R NMN . . . B 2 -36.305 -8.641 18.041 0.95 100.36 ? O5R NMN 504 A 1 
HETATM 6 C C5R NMN . . . B 2 -36.326 -10.007 17.619 0.95 79.76 ? C5R NMN 504 A 1 
HETATM 7 C C4R NMN . . . B 2 -35.353 -10.146 16.446 0.95 79.01 ? C4R NMN 504 A 1 
HETATM 8 O O4R NMN . . . B 2 -35.136 -11.524 16.123 0.95 66.6 ? O4R NMN 504 A 1 
HETATM 9 C C3R NMN . . . B 2 -35.859 -9.46 15.175 0.95 84.68 ? C3R NMN 504 A 1 
HETATM 10 O O3R NMN . . . B 2 -35.006 -8.362 14.819 0.95 84.39 ? O3R NMN 504 A 1 
HETATM 11 C C2R NMN . . . B 2 -35.862 -10.512 14.071 0.95 73.8 ? C2R NMN 504 A 1 
HETATM 12 O O2R NMN . . . B 2 -34.909 -10.204 13.044 0.95 73.21 ? O2R NMN 504 A 1 
HETATM 13 C C1R NMN . . . B 2 -35.475 -11.817 14.753 0.95 67.94 ? C1R NMN 504 A 1 
HETATM 14 N N1 NMN . . . B 2 -36.588 -12.782 14.73 0.95 67.33 ? N1 NMN 504 A 1 
HETATM 15 C C2 NMN . . . B 2 -37.115 -13.139 15.915 0.95 50.84 ? C2 NMN 504 A 1 
HETATM 16 C C3 NMN . . . B 2 -38.159 -14.048 15.999 0.95 45.69 ? C3 NMN 504 A 1 
HETATM 17 C C7 NMN . . . B 2 -38.671 -14.376 17.371 0.95 42.76 ? C7 NMN 504 A 1 
HETATM 18 O O7 NMN . . . B 2 -39.353 -15.375 17.555 0.95 41.39 ? O7 NMN 504 A 1 
HETATM 19 N N7 NMN . . . B 2 -38.337 -13.552 18.367 0.95 40.88 ? N7 NMN 504 A 1 
HETATM 20 C C4 NMN . . . B 2 -38.68 -14.611 14.829 0.95 46.3 ? C4 NMN 504 A 1 
HETATM 21 C C5 NMN . . . B 2 -38.114 -14.232 13.602 0.95 50.87 ? C5 NMN 504 A 1 
HETATM 22 C C6 NMN . . . B 2 -37.06 -13.306 13.574 0.95 57.11 ? C6 NMN 504 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#