data_4AJW
#
_model_server_result.job_id            Aro8XikUxAeQN1rDprCzrw 
_model_server_result.datetime_utc      '2025-01-02 19:34:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ajw 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2027}' 
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_entry.id    4AJW 
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_exptl.entry_id    4AJW 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              325.365 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[(1-methyl-1H-benzimidazol-2-yl)methyl]-6-morpholin-4-ylpyrimidin-4(3H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          113.87 
_cell.angle_gamma         90 
_cell.entry_id            4AJW 
_cell.length_a            63.4 
_cell.length_b            220.47 
_cell.length_c            78.26 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4AJW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
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loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
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_chem_comp.formula           'C17 H19 N5 O2' 
_chem_comp.formula_weight    325.365 
_chem_comp.id                VWN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[(1-methyl-1H-benzimidazol-2-yl)methyl]-6-morpholin-4-ylpyrimidin-4(3H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N2 VWN sing 376 n n 
C1 N8 VWN sing 377 n n 
C1 C12 VWN doub 378 n n 
N2 C3 VWN sing 379 n n 
N2 C7 VWN sing 380 n n 
C3 C4 VWN sing 381 n n 
C4 O5 VWN sing 382 n n 
O5 C6 VWN sing 383 n n 
C6 C7 VWN sing 384 n n 
N8 C9 VWN doub 385 n n 
C9 N10 VWN sing 386 n n 
C9 C15 VWN sing 387 n n 
N10 C11 VWN sing 388 n n 
C11 C12 VWN sing 389 n n 
C11 O13 VWN doub 390 n n 
C14 C15 VWN sing 391 n n 
C14 N16 VWN sing 392 n y 
C14 N17 VWN doub 393 n y 
N16 C19 VWN sing 394 n y 
N16 C24 VWN sing 395 n n 
N17 C18 VWN sing 396 n y 
C18 C19 VWN sing 397 n y 
C18 C23 VWN doub 398 n y 
C19 C20 VWN doub 399 n y 
C20 C21 VWN sing 400 n y 
C21 C22 VWN doub 401 n y 
C22 C23 VWN sing 402 n y 
C12 H12 VWN sing 403 n n 
C3 H31C VWN sing 404 n n 
C3 H32C VWN sing 405 n n 
C7 H71C VWN sing 406 n n 
C7 H72C VWN sing 407 n n 
C4 H41C VWN sing 408 n n 
C4 H42C VWN sing 409 n n 
C6 H61C VWN sing 410 n n 
C6 H62C VWN sing 411 n n 
N10 H10 VWN sing 412 n n 
C15 H151 VWN sing 413 n n 
C15 H152 VWN sing 414 n n 
C24 H241 VWN sing 415 n n 
C24 H242 VWN sing 416 n n 
C24 H243 VWN sing 417 n n 
C23 H23 VWN sing 418 n n 
C20 H20 VWN sing 419 n n 
C21 H21 VWN sing 420 n n 
C22 H22 VWN sing 421 n n 
#
_atom_sites.entry_id                     4AJW 
_atom_sites.fract_transf_matrix[1][1]    0.015773 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00698 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004536 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013973 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 VWN A 1 2027 2027 VWN VWN . 
D 2 VWN B 1 2027 2027 VWN VWN . 
E 3 HOH A 1 2001 2001 HOH HOH . 
E 3 HOH A 2 2002 2002 HOH HOH . 
E 3 HOH A 3 2003 2003 HOH HOH . 
E 3 HOH A 4 2004 2004 HOH HOH . 
E 3 HOH A 5 2005 2005 HOH HOH . 
E 3 HOH A 6 2006 2006 HOH HOH . 
E 3 HOH A 7 2007 2007 HOH HOH . 
E 3 HOH A 8 2008 2008 HOH HOH . 
E 3 HOH A 9 2009 2009 HOH HOH . 
E 3 HOH A 10 2010 2010 HOH HOH . 
E 3 HOH A 11 2011 2011 HOH HOH . 
E 3 HOH A 12 2012 2012 HOH HOH . 
E 3 HOH A 13 2013 2013 HOH HOH . 
E 3 HOH A 14 2014 2014 HOH HOH . 
E 3 HOH A 15 2015 2015 HOH HOH . 
E 3 HOH A 16 2016 2016 HOH HOH . 
E 3 HOH A 17 2017 2017 HOH HOH . 
E 3 HOH A 18 2018 2018 HOH HOH . 
E 3 HOH A 19 2019 2019 HOH HOH . 
F 3 HOH B 1 2001 2001 HOH HOH . 
F 3 HOH B 2 2002 2002 HOH HOH . 
F 3 HOH B 3 2003 2003 HOH HOH . 
F 3 HOH B 4 2004 2004 HOH HOH . 
F 3 HOH B 5 2005 2005 HOH HOH . 
F 3 HOH B 6 2006 2006 HOH HOH . 
F 3 HOH B 7 2007 2007 HOH HOH . 
F 3 HOH B 8 2008 2008 HOH HOH . 
F 3 HOH B 9 2009 2009 HOH HOH . 
F 3 HOH B 10 2010 2010 HOH HOH . 
F 3 HOH B 11 2011 2011 HOH HOH . 
F 3 HOH B 12 2012 2012 HOH HOH . 
F 3 HOH B 13 2013 2013 HOH HOH . 
F 3 HOH B 14 2014 2014 HOH HOH . 
F 3 HOH B 15 2015 2015 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 VWN . . . D 2 -10.046 56.758 8.838 1 73.87 ? C1 VWN 2027 B 1 
HETATM 2 N N2 VWN . . . D 2 -9.495 55.967 7.797 1 73.89 ? N2 VWN 2027 B 1 
HETATM 3 C C3 VWN . . . D 2 -8.625 54.832 8.132 1 73.87 ? C3 VWN 2027 B 1 
HETATM 4 C C4 VWN . . . D 2 -7.764 54.476 6.948 1 73.77 ? C4 VWN 2027 B 1 
HETATM 5 O O5 VWN . . . D 2 -8.547 54.204 5.791 1 73.82 ? O5 VWN 2027 B 1 
HETATM 6 C C6 VWN . . . D 2 -9.314 55.353 5.446 1 73.88 ? C6 VWN 2027 B 1 
HETATM 7 C C7 VWN . . . D 2 -10.253 55.745 6.558 1 73.91 ? C7 VWN 2027 B 1 
HETATM 8 N N8 VWN . . . D 2 -11.115 57.526 8.493 1 73.74 ? N8 VWN 2027 B 1 
HETATM 9 C C9 VWN . . . D 2 -11.689 58.271 9.441 1 73.55 ? C9 VWN 2027 B 1 
HETATM 10 N N10 VWN . . . D 2 -11.242 58.307 10.765 1 73.72 ? N10 VWN 2027 B 1 
HETATM 11 C C11 VWN . . . D 2 -10.157 57.553 11.175 1 73.9 ? C11 VWN 2027 B 1 
HETATM 12 C C12 VWN . . . D 2 -9.553 56.757 10.152 1 73.92 ? C12 VWN 2027 B 1 
HETATM 13 O O13 VWN . . . D 2 -9.792 57.606 12.358 1 74 ? O13 VWN 2027 B 1 
HETATM 14 C C14 VWN . . . D 2 -12.534 60.207 8.125 1 72.83 ? C14 VWN 2027 B 1 
HETATM 15 C C15 VWN . . . D 2 -12.895 59.111 9.07 1 73.2 ? C15 VWN 2027 B 1 
HETATM 16 N N16 VWN . . . D 2 -13.333 60.563 7.032 1 72.6 ? N16 VWN 2027 B 1 
HETATM 17 N N17 VWN . . . D 2 -11.452 60.942 8.242 1 72.61 ? N17 VWN 2027 B 1 
HETATM 18 C C18 VWN . . . D 2 -11.521 61.843 7.18 1 72.31 ? C18 VWN 2027 B 1 
HETATM 19 C C19 VWN . . . D 2 -12.67 61.626 6.425 1 72.32 ? C19 VWN 2027 B 1 
HETATM 20 C C20 VWN . . . D 2 -12.978 62.398 5.313 1 72.2 ? C20 VWN 2027 B 1 
HETATM 21 C C21 VWN . . . D 2 -12.097 63.416 4.965 1 72.11 ? C21 VWN 2027 B 1 
HETATM 22 C C22 VWN . . . D 2 -10.944 63.646 5.71 1 72.15 ? C22 VWN 2027 B 1 
HETATM 23 C C23 VWN . . . D 2 -10.644 62.864 6.82 1 72.21 ? C23 VWN 2027 B 1 
HETATM 24 C C24 VWN . . . D 2 -14.598 60.006 6.557 1 72.61 ? C24 VWN 2027 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
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