data_4AJY # _model_server_result.job_id oR2yve1rpSWnzLV_kkH2KQ _model_server_result.datetime_utc '2024-12-21 16:54:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ajy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1208}' # _entry.id 4AJY # _exptl.entry_id 4AJY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4AJY _cell.length_a 59.232 _cell.length_b 59.232 _cell.length_c 244.038 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AJY _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ALA 5 H ALA 563 1_555 C N HYP 6 H HYP 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? covale ? covale2 C C HYP 6 H HYP 564 1_555 C N TYR 7 H TYR 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4AJY _atom_sites.fract_transf_matrix[1][1] 0.016883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004098 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GOL V 1 1208 1208 GOL GOL . F 6 HOH B 1 2001 2001 HOH HOH . F 6 HOH B 2 2002 2002 HOH HOH . F 6 HOH B 3 2003 2003 HOH HOH . F 6 HOH B 4 2004 2004 HOH HOH . F 6 HOH B 5 2005 2005 HOH HOH . F 6 HOH B 6 2006 2006 HOH HOH . F 6 HOH B 7 2007 2007 HOH HOH . F 6 HOH B 8 2008 2008 HOH HOH . F 6 HOH B 9 2009 2009 HOH HOH . F 6 HOH B 10 2010 2010 HOH HOH . F 6 HOH B 11 2011 2011 HOH HOH . F 6 HOH B 12 2012 2012 HOH HOH . F 6 HOH B 13 2013 2013 HOH HOH . F 6 HOH B 14 2014 2014 HOH HOH . F 6 HOH B 15 2015 2015 HOH HOH . F 6 HOH B 16 2016 2016 HOH HOH . F 6 HOH B 17 2017 2017 HOH HOH . F 6 HOH B 18 2018 2018 HOH HOH . F 6 HOH B 19 2019 2019 HOH HOH . F 6 HOH B 20 2020 2020 HOH HOH . F 6 HOH B 21 2021 2021 HOH HOH . F 6 HOH B 22 2022 2022 HOH HOH . F 6 HOH B 23 2023 2023 HOH HOH . F 6 HOH B 24 2024 2024 HOH HOH . F 6 HOH B 25 2025 2025 HOH HOH . F 6 HOH B 26 2026 2026 HOH HOH . F 6 HOH B 27 2027 2027 HOH HOH . F 6 HOH B 28 2028 2028 HOH HOH . F 6 HOH B 29 2029 2029 HOH HOH . F 6 HOH B 30 2030 2030 HOH HOH . F 6 HOH B 31 2031 2031 HOH HOH . F 6 HOH B 32 2032 2032 HOH HOH . F 6 HOH B 33 2033 2033 HOH HOH . F 6 HOH B 34 2034 2034 HOH HOH . F 6 HOH B 35 2035 2035 HOH HOH . F 6 HOH B 36 2036 2036 HOH HOH . F 6 HOH B 37 2037 2037 HOH HOH . F 6 HOH B 38 2038 2038 HOH HOH . F 6 HOH B 39 2039 2039 HOH HOH . F 6 HOH B 40 2040 2040 HOH HOH . F 6 HOH B 41 2041 2041 HOH HOH . F 6 HOH B 42 2042 2042 HOH HOH . F 6 HOH B 43 2043 2043 HOH HOH . F 6 HOH B 44 2044 2044 HOH HOH . F 6 HOH B 45 2045 2045 HOH HOH . F 6 HOH B 46 2046 2046 HOH HOH . F 6 HOH B 47 2047 2047 HOH HOH . F 6 HOH B 48 2048 2048 HOH HOH . F 6 HOH B 49 2049 2049 HOH HOH . F 6 HOH B 50 2050 2050 HOH HOH . F 6 HOH B 51 2051 2051 HOH HOH . F 6 HOH B 52 2052 2052 HOH HOH . F 6 HOH B 53 2053 2053 HOH HOH . F 6 HOH B 54 2054 2054 HOH HOH . F 6 HOH B 55 2055 2055 HOH HOH . F 6 HOH B 56 2056 2056 HOH HOH . F 6 HOH B 57 2057 2057 HOH HOH . F 6 HOH B 58 2058 2058 HOH HOH . F 6 HOH B 59 2059 2059 HOH HOH . F 6 HOH B 60 2060 2060 HOH HOH . F 6 HOH B 61 2061 2061 HOH HOH . F 6 HOH B 62 2062 2062 HOH HOH . F 6 HOH B 63 2063 2063 HOH HOH . F 6 HOH B 64 2064 2064 HOH HOH . F 6 HOH B 65 2065 2065 HOH HOH . F 6 HOH B 66 2066 2066 HOH HOH . F 6 HOH B 67 2067 2067 HOH HOH . F 6 HOH B 68 2068 2068 HOH HOH . F 6 HOH B 69 2069 2069 HOH HOH . F 6 HOH B 70 2070 2070 HOH HOH . F 6 HOH B 71 2071 2071 HOH HOH . F 6 HOH B 72 2072 2072 HOH HOH . F 6 HOH B 73 2073 2073 HOH HOH . F 6 HOH B 74 2074 2074 HOH HOH . F 6 HOH B 75 2075 2075 HOH HOH . F 6 HOH B 76 2076 2076 HOH HOH . F 6 HOH B 77 2077 2077 HOH HOH . F 6 HOH B 78 2078 2078 HOH HOH . F 6 HOH B 79 2079 2079 HOH HOH . F 6 HOH B 80 2080 2080 HOH HOH . F 6 HOH B 81 2081 2081 HOH HOH . F 6 HOH B 82 2082 2082 HOH HOH . F 6 HOH B 83 2083 2083 HOH HOH . F 6 HOH B 84 2084 2084 HOH HOH . G 6 HOH C 1 2001 2001 HOH HOH . G 6 HOH C 2 2002 2002 HOH HOH . G 6 HOH C 3 2003 2003 HOH HOH . G 6 HOH C 4 2004 2004 HOH HOH . G 6 HOH C 5 2005 2005 HOH HOH . G 6 HOH C 6 2006 2006 HOH HOH . G 6 HOH C 7 2007 2007 HOH HOH . G 6 HOH C 8 2008 2008 HOH HOH . G 6 HOH C 9 2009 2009 HOH HOH . G 6 HOH C 10 2010 2010 HOH HOH . G 6 HOH C 11 2011 2011 HOH HOH . G 6 HOH C 12 2012 2012 HOH HOH . G 6 HOH C 13 2013 2013 HOH HOH . G 6 HOH C 14 2014 2014 HOH HOH . G 6 HOH C 15 2015 2015 HOH HOH . G 6 HOH C 16 2016 2016 HOH HOH . G 6 HOH C 17 2017 2017 HOH HOH . G 6 HOH C 18 2018 2018 HOH HOH . G 6 HOH C 19 2019 2019 HOH HOH . G 6 HOH C 20 2020 2020 HOH HOH . G 6 HOH C 21 2021 2021 HOH HOH . G 6 HOH C 22 2022 2022 HOH HOH . G 6 HOH C 23 2023 2023 HOH HOH . G 6 HOH C 24 2024 2024 HOH HOH . G 6 HOH C 25 2025 2025 HOH HOH . G 6 HOH C 26 2026 2026 HOH HOH . G 6 HOH C 27 2027 2027 HOH HOH . G 6 HOH C 28 2028 2028 HOH HOH . G 6 HOH C 29 2029 2029 HOH HOH . G 6 HOH C 30 2030 2030 HOH HOH . G 6 HOH C 31 2031 2031 HOH HOH . G 6 HOH C 32 2032 2032 HOH HOH . G 6 HOH C 33 2033 2033 HOH HOH . G 6 HOH C 34 2034 2034 HOH HOH . G 6 HOH C 35 2035 2035 HOH HOH . G 6 HOH C 36 2036 2036 HOH HOH . G 6 HOH C 37 2037 2037 HOH HOH . G 6 HOH C 38 2038 2038 HOH HOH . G 6 HOH C 39 2039 2039 HOH HOH . G 6 HOH C 40 2040 2040 HOH HOH . G 6 HOH C 41 2041 2041 HOH HOH . G 6 HOH C 42 2042 2042 HOH HOH . G 6 HOH C 43 2043 2043 HOH HOH . G 6 HOH C 44 2044 2044 HOH HOH . G 6 HOH C 45 2045 2045 HOH HOH . G 6 HOH C 46 2046 2046 HOH HOH . G 6 HOH C 47 2047 2047 HOH HOH . G 6 HOH C 48 2048 2048 HOH HOH . G 6 HOH C 49 2049 2049 HOH HOH . G 6 HOH C 50 2050 2050 HOH HOH . G 6 HOH C 51 2051 2051 HOH HOH . G 6 HOH C 52 2052 2052 HOH HOH . G 6 HOH C 53 2053 2053 HOH HOH . G 6 HOH C 54 2054 2054 HOH HOH . G 6 HOH C 55 2055 2055 HOH HOH . G 6 HOH C 56 2056 2056 HOH HOH . G 6 HOH C 57 2057 2057 HOH HOH . G 6 HOH C 58 2058 2058 HOH HOH . G 6 HOH C 59 2059 2059 HOH HOH . G 6 HOH C 60 2060 2060 HOH HOH . G 6 HOH C 61 2061 2061 HOH HOH . G 6 HOH C 62 2062 2062 HOH HOH . G 6 HOH C 63 2063 2063 HOH HOH . G 6 HOH C 64 2064 2064 HOH HOH . G 6 HOH C 65 2065 2065 HOH HOH . G 6 HOH C 66 2066 2066 HOH HOH . G 6 HOH C 67 2067 2067 HOH HOH . G 6 HOH C 68 2068 2068 HOH HOH . G 6 HOH C 69 2069 2069 HOH HOH . H 6 HOH H 1 2001 2001 HOH HOH . H 6 HOH H 2 2002 2002 HOH HOH . H 6 HOH H 3 2003 2003 HOH HOH . H 6 HOH H 4 2004 2004 HOH HOH . H 6 HOH H 5 2005 2005 HOH HOH . H 6 HOH H 6 2006 2006 HOH HOH . H 6 HOH H 7 2007 2007 HOH HOH . H 6 HOH H 8 2008 2008 HOH HOH . H 6 HOH H 9 2009 2009 HOH HOH . H 6 HOH H 10 2010 2010 HOH HOH . I 6 HOH V 1 2001 2001 HOH HOH . I 6 HOH V 2 2002 2002 HOH HOH . I 6 HOH V 3 2003 2003 HOH HOH . I 6 HOH V 4 2004 2004 HOH HOH . I 6 HOH V 5 2005 2005 HOH HOH . I 6 HOH V 6 2006 2006 HOH HOH . I 6 HOH V 7 2007 2007 HOH HOH . I 6 HOH V 8 2008 2008 HOH HOH . I 6 HOH V 9 2009 2009 HOH HOH . I 6 HOH V 10 2010 2010 HOH HOH . I 6 HOH V 11 2011 2011 HOH HOH . I 6 HOH V 12 2012 2012 HOH HOH . I 6 HOH V 13 2013 2013 HOH HOH . I 6 HOH V 14 2014 2014 HOH HOH . I 6 HOH V 15 2015 2015 HOH HOH . I 6 HOH V 16 2016 2016 HOH HOH . I 6 HOH V 17 2017 2017 HOH HOH . I 6 HOH V 18 2018 2018 HOH HOH . I 6 HOH V 19 2019 2019 HOH HOH . I 6 HOH V 20 2020 2020 HOH HOH . I 6 HOH V 21 2021 2021 HOH HOH . I 6 HOH V 22 2022 2022 HOH HOH . I 6 HOH V 23 2023 2023 HOH HOH . I 6 HOH V 24 2024 2024 HOH HOH . I 6 HOH V 25 2025 2025 HOH HOH . I 6 HOH V 26 2026 2026 HOH HOH . I 6 HOH V 27 2027 2027 HOH HOH . I 6 HOH V 28 2028 2028 HOH HOH . I 6 HOH V 29 2029 2029 HOH HOH . I 6 HOH V 30 2030 2030 HOH HOH . I 6 HOH V 31 2031 2031 HOH HOH . I 6 HOH V 32 2032 2032 HOH HOH . I 6 HOH V 33 2033 2033 HOH HOH . I 6 HOH V 34 2034 2034 HOH HOH . I 6 HOH V 35 2035 2035 HOH HOH . I 6 HOH V 36 2036 2036 HOH HOH . I 6 HOH V 37 2037 2037 HOH HOH . I 6 HOH V 38 2038 2038 HOH HOH . I 6 HOH V 39 2039 2039 HOH HOH . I 6 HOH V 40 2040 2040 HOH HOH . I 6 HOH V 41 2041 2041 HOH HOH . I 6 HOH V 42 2042 2042 HOH HOH . I 6 HOH V 43 2043 2043 HOH HOH . I 6 HOH V 44 2044 2044 HOH HOH . I 6 HOH V 45 2045 2045 HOH HOH . I 6 HOH V 46 2046 2046 HOH HOH . I 6 HOH V 47 2047 2047 HOH HOH . I 6 HOH V 48 2048 2048 HOH HOH . I 6 HOH V 49 2049 2049 HOH HOH . I 6 HOH V 50 2050 2050 HOH HOH . I 6 HOH V 51 2051 2051 HOH HOH . I 6 HOH V 52 2052 2052 HOH HOH . I 6 HOH V 53 2053 2053 HOH HOH . I 6 HOH V 54 2054 2054 HOH HOH . I 6 HOH V 55 2055 2055 HOH HOH . I 6 HOH V 56 2056 2056 HOH HOH . I 6 HOH V 57 2057 2057 HOH HOH . I 6 HOH V 58 2058 2058 HOH HOH . I 6 HOH V 59 2059 2059 HOH HOH . I 6 HOH V 60 2060 2060 HOH HOH . I 6 HOH V 61 2061 2061 HOH HOH . I 6 HOH V 62 2062 2062 HOH HOH . I 6 HOH V 63 2063 2063 HOH HOH . I 6 HOH V 64 2064 2064 HOH HOH . I 6 HOH V 65 2065 2065 HOH HOH . I 6 HOH V 66 2066 2066 HOH HOH . I 6 HOH V 67 2067 2067 HOH HOH . I 6 HOH V 68 2068 2068 HOH HOH . I 6 HOH V 69 2069 2069 HOH HOH . I 6 HOH V 70 2070 2070 HOH HOH . I 6 HOH V 71 2071 2071 HOH HOH . I 6 HOH V 72 2072 2072 HOH HOH . I 6 HOH V 73 2073 2073 HOH HOH . I 6 HOH V 74 2074 2074 HOH HOH . I 6 HOH V 75 2075 2075 HOH HOH . I 6 HOH V 76 2076 2076 HOH HOH . I 6 HOH V 77 2077 2077 HOH HOH . I 6 HOH V 78 2078 2078 HOH HOH . I 6 HOH V 79 2079 2079 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 16.921 -14.02 -5.262 1 30.68 ? C1 GOL 1208 V 1 HETATM 2 O O1 GOL . . . E 5 17.572 -13.128 -4.329 1 33.73 ? O1 GOL 1208 V 1 HETATM 3 C C2 GOL . . . E 5 16.123 -13.176 -6.259 1 30.61 ? C2 GOL 1208 V 1 HETATM 4 O O2 GOL . . . E 5 15.657 -13.983 -7.331 1 27.58 ? O2 GOL 1208 V 1 HETATM 5 C C3 GOL . . . E 5 14.9 -12.541 -5.61 1 30.29 ? C3 GOL 1208 V 1 HETATM 6 O O3 GOL . . . E 5 13.997 -13.562 -5.158 1 25.65 ? O3 GOL 1208 V 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #