data_4AJZ # _model_server_result.job_id 7IJYFMY3MYcLhIkgDRsLTg _model_server_result.datetime_utc '2024-11-27 00:16:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ajz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1032}' # _entry.id 4AJZ # _exptl.entry_id 4AJZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.111 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4AJZ _cell.length_a 79.55 _cell.length_b 79.55 _cell.length_c 38.97 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AJZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,I,J 1 1,2,3 C,D,F,G,H,K,L 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 E ZN ZN . B ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc2 B NE2 HIS 10 B HIS 10 2_555 E ZN ZN . B ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc3 B NE2 HIS 10 B HIS 10 3_555 E ZN ZN . B ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 E ZN ZN . B ZN 1030 1_555 J O HOH . B HOH 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc5 E ZN ZN . B ZN 1030 1_555 J O HOH . B HOH 2009 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc6 E ZN ZN . B ZN 1030 1_555 J O HOH . B HOH 2009 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc7 D NE2 HIS 10 D HIS 10 1_555 F ZN ZN . D ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc8 D NE2 HIS 10 D HIS 10 2_555 F ZN ZN . D ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc9 D NE2 HIS 10 D HIS 10 3_555 F ZN ZN . D ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc10 F ZN ZN . D ZN 1030 1_555 G CL CL . D CL 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc11 F ZN ZN . D ZN 1030 1_555 G CL CL . D CL 1031 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc12 F ZN ZN . D ZN 1030 1_555 G CL CL . D CL 1031 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C6 H6 O' _chem_comp.formula_weight 94.111 _chem_comp.id IPH _chem_comp.mon_nstd_flag . _chem_comp.name PHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IPH doub 158 n y C1 C6 IPH sing 159 n y C1 O1 IPH sing 160 n n C2 C3 IPH sing 161 n y C2 H2 IPH sing 162 n n C3 C4 IPH doub 163 n y C3 H3 IPH sing 164 n n C4 C5 IPH sing 165 n y C4 H4 IPH sing 166 n n C5 C6 IPH doub 167 n y C5 H5 IPH sing 168 n n C6 H6 IPH sing 169 n n O1 HO1 IPH sing 170 n n # _atom_sites.entry_id 4AJZ _atom_sites.fract_transf_matrix[1][1] 0.012571 _atom_sites.fract_transf_matrix[1][2] 0.007258 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN B 1 1030 1030 ZN ZN . F 3 ZN D 1 1030 1030 ZN ZN . G 4 CL D 1 1031 1031 CL CL . H 5 IPH D 1 1032 1032 IPH IPH . I 6 HOH A 1 2001 2001 HOH HOH . I 6 HOH A 2 2002 2002 HOH HOH . I 6 HOH A 3 2003 2003 HOH HOH . I 6 HOH A 4 2004 2004 HOH HOH . I 6 HOH A 5 2005 2005 HOH HOH . I 6 HOH A 6 2006 2006 HOH HOH . I 6 HOH A 7 2007 2007 HOH HOH . I 6 HOH A 8 2008 2008 HOH HOH . I 6 HOH A 9 2009 2009 HOH HOH . I 6 HOH A 10 2010 2010 HOH HOH . I 6 HOH A 11 2011 2011 HOH HOH . I 6 HOH A 12 2012 2012 HOH HOH . J 6 HOH B 1 2001 2001 HOH HOH . J 6 HOH B 2 2002 2002 HOH HOH . J 6 HOH B 3 2003 2003 HOH HOH . J 6 HOH B 4 2004 2004 HOH HOH . J 6 HOH B 5 2005 2005 HOH HOH . J 6 HOH B 6 2006 2006 HOH HOH . J 6 HOH B 7 2007 2007 HOH HOH . J 6 HOH B 8 2008 2008 HOH HOH . J 6 HOH B 9 2009 2009 HOH HOH . J 6 HOH B 10 2010 2010 HOH HOH . J 6 HOH B 11 2011 2011 HOH HOH . J 6 HOH B 12 2012 2012 HOH HOH . J 6 HOH B 13 2013 2013 HOH HOH . J 6 HOH B 14 2014 2014 HOH HOH . J 6 HOH B 15 2015 2015 HOH HOH . J 6 HOH B 16 2016 2016 HOH HOH . J 6 HOH B 17 2017 2017 HOH HOH . J 6 HOH B 18 2018 2018 HOH HOH . K 6 HOH C 1 2001 2001 HOH HOH . K 6 HOH C 2 2002 2002 HOH HOH . K 6 HOH C 3 2003 2003 HOH HOH . K 6 HOH C 4 2004 2004 HOH HOH . K 6 HOH C 5 2005 2005 HOH HOH . K 6 HOH C 6 2006 2006 HOH HOH . K 6 HOH C 7 2007 2007 HOH HOH . K 6 HOH C 8 2008 2008 HOH HOH . L 6 HOH D 1 2001 2001 HOH HOH . L 6 HOH D 2 2002 2002 HOH HOH . L 6 HOH D 3 2003 2003 HOH HOH . L 6 HOH D 4 2004 2004 HOH HOH . L 6 HOH D 5 2005 2005 HOH HOH . L 6 HOH D 6 2006 2006 HOH HOH . L 6 HOH D 7 2007 2007 HOH HOH . L 6 HOH D 8 2008 2008 HOH HOH . L 6 HOH D 9 2009 2009 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPH . . . H 5 -9.117 5.513 9.685 1 25.12 ? C1 IPH 1032 D 1 HETATM 2 C C2 IPH . . . H 5 -9.762 5.273 8.486 1 23.64 ? C2 IPH 1032 D 1 HETATM 3 C C3 IPH . . . H 5 -9.011 4.934 7.349 1 24.98 ? C3 IPH 1032 D 1 HETATM 4 C C4 IPH . . . H 5 -7.635 4.805 7.447 1 22.91 ? C4 IPH 1032 D 1 HETATM 5 C C5 IPH . . . H 5 -6.975 5.049 8.655 1 21.46 ? C5 IPH 1032 D 1 HETATM 6 C C6 IPH . . . H 5 -7.719 5.402 9.789 1 23.83 ? C6 IPH 1032 D 1 HETATM 7 O O1 IPH . . . H 5 -9.805 5.825 10.818 1 25.89 ? O1 IPH 1032 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 7 #