data_4AKI # _model_server_result.job_id 9I9j8gp8_htac6vsMd9ukQ _model_server_result.datetime_utc '2025-02-20 02:29:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4aki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":5093}' # _entry.id 4AKI # _exptl.entry_id 4AKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.91 _cell.angle_gamma 90 _cell.entry_id 4AKI _cell.length_a 175.769 _cell.length_b 118.186 _cell.length_c 202.679 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 937 A THR 2081 1_555 G MG MG . A MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc2 A OE1 GLU 1051 A GLU 2195 1_555 G MG MG . A MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc3 C O3G ATP . A ATP 5093 1_555 G MG MG . A MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc4 C O1B ATP . A ATP 5093 1_555 G MG MG . A MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc5 C O2A ATP . A ATP 5093 1_555 G MG MG . A MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc6 B OG1 THR 937 B THR 2081 1_555 L MG MG . B MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? metalc ? metalc7 B OE1 GLU 1051 B GLU 2195 1_555 L MG MG . B MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc8 H O1B ATP . B ATP 5093 1_555 L MG MG . B MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc9 H O3G ATP . B ATP 5093 1_555 L MG MG . B MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4AKI _atom_sites.fract_transf_matrix[1][1] 0.005689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00009 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 5093 5093 ATP ATP . D 3 SO4 A 1 5094 5094 SO4 SO4 . E 3 SO4 A 1 5095 5095 SO4 SO4 . F 3 SO4 A 1 5096 5096 SO4 SO4 . G 4 MG A 1 5097 5097 MG MG . H 2 ATP B 1 5093 5093 ATP ATP . I 3 SO4 B 1 5094 5094 SO4 SO4 . J 3 SO4 B 1 5095 5095 SO4 SO4 . K 3 SO4 B 1 5096 5096 SO4 SO4 . L 4 MG B 1 5097 5097 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 105.463 -4.653 114.725 1 113.38 ? PG ATP 5093 A 1 HETATM 2 O O1G ATP . . . C 2 104.272 -3.67 114.722 1 157 ? O1G ATP 5093 A 1 HETATM 3 O O2G ATP . . . C 2 105.27 -5.651 115.784 1 145.83 ? O2G ATP 5093 A 1 HETATM 4 O O3G ATP . . . C 2 106.826 -4.016 114.776 1 128.97 ? O3G ATP 5093 A 1 HETATM 5 P PB ATP . . . C 2 105.372 -4.483 111.988 1 119.64 ? PB ATP 5093 A 1 HETATM 6 O O1B ATP . . . C 2 106.287 -3.274 112.197 1 123.26 ? O1B ATP 5093 A 1 HETATM 7 O O2B ATP . . . C 2 103.952 -4.132 111.504 1 176.24 ? O2B ATP 5093 A 1 HETATM 8 O O3B ATP . . . C 2 105.342 -5.38 113.344 1 72.38 ? O3B ATP 5093 A 1 HETATM 9 P PA ATP . . . C 2 107.491 -5.157 110.342 1 122.77 ? PA ATP 5093 A 1 HETATM 10 O O1A ATP . . . C 2 107.385 -4.042 109.391 1 134.94 ? O1A ATP 5093 A 1 HETATM 11 O O2A ATP . . . C 2 108.423 -5.041 111.548 1 170.85 ? O2A ATP 5093 A 1 HETATM 12 O O3A ATP . . . C 2 105.979 -5.452 110.855 1 109.71 ? O3A ATP 5093 A 1 HETATM 13 O O5' ATP . . . C 2 108.154 -6.338 109.517 1 88.32 ? O5' ATP 5093 A 1 HETATM 14 C C5' ATP . . . C 2 107.558 -6.653 108.295 1 109.75 ? C5' ATP 5093 A 1 HETATM 15 C C4' ATP . . . C 2 107.441 -8.161 108.018 1 115.29 ? C4' ATP 5093 A 1 HETATM 16 O O4' ATP . . . C 2 106.421 -8.357 107.022 1 111.05 ? O4' ATP 5093 A 1 HETATM 17 C C3' ATP . . . C 2 108.751 -8.68 107.425 1 100.99 ? C3' ATP 5093 A 1 HETATM 18 O O3' ATP . . . C 2 109.402 -9.644 108.189 1 100.97 ? O3' ATP 5093 A 1 HETATM 19 C C2' ATP . . . C 2 108.385 -9.309 106.116 1 98.52 ? C2' ATP 5093 A 1 HETATM 20 O O2' ATP . . . C 2 108.388 -10.737 106.139 1 139.02 ? O2' ATP 5093 A 1 HETATM 21 C C1' ATP . . . C 2 106.971 -8.909 105.821 1 108.79 ? C1' ATP 5093 A 1 HETATM 22 N N9 ATP . . . C 2 106.969 -7.977 104.636 1 133.82 ? N9 ATP 5093 A 1 HETATM 23 C C8 ATP . . . C 2 106.793 -6.648 104.654 1 134.77 ? C8 ATP 5093 A 1 HETATM 24 N N7 ATP . . . C 2 106.849 -6.132 103.42 1 129.91 ? N7 ATP 5093 A 1 HETATM 25 C C5 ATP . . . C 2 107.043 -7.134 102.58 1 125.53 ? C5 ATP 5093 A 1 HETATM 26 C C6 ATP . . . C 2 107.15 -7.272 101.127 1 140.58 ? C6 ATP 5093 A 1 HETATM 27 N N6 ATP . . . C 2 107.058 -6.197 100.318 1 159.67 ? N6 ATP 5093 A 1 HETATM 28 N N1 ATP . . . C 2 107.361 -8.514 100.626 1 180.34 ? N1 ATP 5093 A 1 HETATM 29 C C2 ATP . . . C 2 107.441 -9.599 101.413 1 195.39 ? C2 ATP 5093 A 1 HETATM 30 N N3 ATP . . . C 2 107.314 -9.527 102.746 1 196.73 ? N3 ATP 5093 A 1 HETATM 31 C C4 ATP . . . C 2 107.135 -8.343 103.38 1 144.55 ? C4 ATP 5093 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #