data_4AKI # _model_server_result.job_id lSYPilEN3XBTGSz2lxmbJA _model_server_result.datetime_utc '2024-11-12 20:47:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4aki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":5093}' # _entry.id 4AKI # _exptl.entry_id 4AKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.91 _cell.angle_gamma 90 _cell.entry_id 4AKI _cell.length_a 175.769 _cell.length_b 118.186 _cell.length_c 202.679 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 937 A THR 2081 1_555 G MG MG . A MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc2 A OE1 GLU 1051 A GLU 2195 1_555 G MG MG . A MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc3 C O3G ATP . A ATP 5093 1_555 G MG MG . A MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc4 C O1B ATP . A ATP 5093 1_555 G MG MG . A MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc5 C O2A ATP . A ATP 5093 1_555 G MG MG . A MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc6 B OG1 THR 937 B THR 2081 1_555 L MG MG . B MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? metalc ? metalc7 B OE1 GLU 1051 B GLU 2195 1_555 L MG MG . B MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc8 H O1B ATP . B ATP 5093 1_555 L MG MG . B MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc9 H O3G ATP . B ATP 5093 1_555 L MG MG . B MG 5097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4AKI _atom_sites.fract_transf_matrix[1][1] 0.005689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00009 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 5093 5093 ATP ATP . D 3 SO4 A 1 5094 5094 SO4 SO4 . E 3 SO4 A 1 5095 5095 SO4 SO4 . F 3 SO4 A 1 5096 5096 SO4 SO4 . G 4 MG A 1 5097 5097 MG MG . H 2 ATP B 1 5093 5093 ATP ATP . I 3 SO4 B 1 5094 5094 SO4 SO4 . J 3 SO4 B 1 5095 5095 SO4 SO4 . K 3 SO4 B 1 5096 5096 SO4 SO4 . L 4 MG B 1 5097 5097 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . H 2 146.871 -8.78 288.752 1 169.67 ? PG ATP 5093 B 1 HETATM 2 O O1G ATP . . . H 2 147.857 -7.641 288.888 1 207.07 ? O1G ATP 5093 B 1 HETATM 3 O O2G ATP . . . H 2 147.292 -9.828 287.764 1 166.48 ? O2G ATP 5093 B 1 HETATM 4 O O3G ATP . . . H 2 145.421 -8.343 288.596 1 193.34 ? O3G ATP 5093 B 1 HETATM 5 P PB ATP . . . H 2 146.498 -8.663 291.515 1 183.79 ? PB ATP 5093 B 1 HETATM 6 O O1B ATP . . . H 2 145.364 -7.724 291.172 1 180.2 ? O1B ATP 5093 B 1 HETATM 7 O O2B ATP . . . H 2 147.727 -8.128 292.178 1 152 ? O2B ATP 5093 B 1 HETATM 8 O O3B ATP . . . H 2 146.952 -9.48 290.185 1 152.49 ? O3B ATP 5093 B 1 HETATM 9 P PA ATP . . . H 2 144.355 -9.94 292.823 1 181.15 ? PA ATP 5093 B 1 HETATM 10 O O1A ATP . . . H 2 144.018 -8.855 293.784 1 158.15 ? O1A ATP 5093 B 1 HETATM 11 O O2A ATP . . . H 2 143.586 -10.015 291.526 1 224.47 ? O2A ATP 5093 B 1 HETATM 12 O O3A ATP . . . H 2 145.91 -9.834 292.455 1 188.63 ? O3A ATP 5093 B 1 HETATM 13 O O5' ATP . . . H 2 144.32 -11.389 293.502 1 154.43 ? O5' ATP 5093 B 1 HETATM 14 C C5' ATP . . . H 2 144.353 -11.473 294.912 1 182.59 ? C5' ATP 5093 B 1 HETATM 15 C C4' ATP . . . H 2 144.819 -12.866 295.325 1 182.59 ? C4' ATP 5093 B 1 HETATM 16 O O4' ATP . . . H 2 145.596 -12.765 296.525 1 184.18 ? O4' ATP 5093 B 1 HETATM 17 C C3' ATP . . . H 2 143.635 -13.803 295.596 1 162.81 ? C3' ATP 5093 B 1 HETATM 18 O O3' ATP . . . H 2 143.706 -14.947 294.74 1 115.48 ? O3' ATP 5093 B 1 HETATM 19 C C2' ATP . . . H 2 143.749 -14.236 297.036 1 167.4 ? C2' ATP 5093 B 1 HETATM 20 O O2' ATP . . . H 2 143.965 -15.647 297.093 1 193.83 ? O2' ATP 5093 B 1 HETATM 21 C C1' ATP . . . H 2 144.987 -13.539 297.571 1 188.27 ? C1' ATP 5093 B 1 HETATM 22 N N9 ATP . . . H 2 144.622 -12.678 298.722 1 196.99 ? N9 ATP 5093 B 1 HETATM 23 C C8 ATP . . . H 2 144.516 -11.338 298.707 1 208.86 ? C8 ATP 5093 B 1 HETATM 24 N N7 ATP . . . H 2 144.189 -10.861 299.93 1 199.51 ? N7 ATP 5093 B 1 HETATM 25 C C5 ATP . . . H 2 144.086 -11.915 300.747 1 205.04 ? C5 ATP 5093 B 1 HETATM 26 C C6 ATP . . . H 2 143.768 -12.127 302.169 1 238.98 ? C6 ATP 5093 B 1 HETATM 27 N N6 ATP . . . H 2 143.496 -11.061 302.963 1 261.21 ? N6 ATP 5093 B 1 HETATM 28 N N1 ATP . . . H 2 143.763 -13.406 302.634 1 259.2 ? N1 ATP 5093 B 1 HETATM 29 C C2 ATP . . . H 2 144.036 -14.452 301.843 1 228.41 ? C2 ATP 5093 B 1 HETATM 30 N N3 ATP . . . H 2 144.337 -14.33 300.544 1 197.7 ? N3 ATP 5093 B 1 HETATM 31 C C4 ATP . . . H 2 144.371 -13.113 299.95 1 193.46 ? C4 ATP 5093 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #