data_4AKJ
#
_model_server_result.job_id            oZ30fWz6GkyTfNpl-LEQYw 
_model_server_result.datetime_utc      '2024-11-23 02:32:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4akj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1022}' 
#
_entry.id    4AKJ 
#
_exptl.entry_id    4AKJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              415.521 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-(16-Carboxyhexadecanoyl)-L-glutamic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4AKJ 
_cell.length_a            78.717 
_cell.length_b            78.717 
_cell.length_c            40.551 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AKJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,L,M 1 1,2,3 
C,D,I,J,K,N,O 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
covale ? covale1 B NZ LYS 29 B LYS 29 1_555 F C07 16E . B 16E 1022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 G ZN ZN . B ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc2 B NE2 HIS 10 B HIS 10 2_555 G ZN ZN . B ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc3 B NE2 HIS 10 B HIS 10 3_555 G ZN ZN . B ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc4 G ZN ZN . B ZN 1030 1_555 H CL CL . B CL 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc5 G ZN ZN . B ZN 1030 1_555 H CL CL . B CL 1031 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc6 G ZN ZN . B ZN 1030 1_555 H CL CL . B CL 1031 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc7 D NE2 HIS 10 D HIS 10 2_555 J ZN ZN . D ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc8 D NE2 HIS 10 D HIS 10 3_555 J ZN ZN . D ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc9 D NE2 HIS 10 D HIS 10 1_555 J ZN ZN . D ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc10 J ZN ZN . D ZN 1030 1_555 K CL CL . D CL 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc11 J ZN ZN . D ZN 1030 1_555 K CL CL . D CL 1031 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc12 J ZN ZN . D ZN 1030 1_555 K CL CL . D CL 1031 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
#
_chem_comp.formula           'C21 H37 N O7' 
_chem_comp.formula_weight    415.521 
_chem_comp.id                16E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-(16-Carboxyhexadecanoyl)-L-glutamic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C02 16E doub 1 n n 
C02 N03 16E sing 2 n n 
C02 C12 16E sing 3 n n 
N03 C04 16E sing 4 n n 
C04 C05 16E sing 5 n n 
C04 C09 16E sing 6 n n 
C05 C06 16E sing 7 n n 
C06 C07 16E sing 8 n n 
C07 O08 16E doub 9 n n 
C07 OXT 16E sing 10 n n 
C09 O10 16E doub 11 n n 
C09 O11 16E sing 12 n n 
C12 C13 16E sing 13 n n 
C13 C14 16E sing 14 n n 
C14 C15 16E sing 15 n n 
C15 C16 16E sing 16 n n 
C16 C17 16E sing 17 n n 
C17 C18 16E sing 18 n n 
C18 C19 16E sing 19 n n 
C19 C20 16E sing 20 n n 
C20 C21 16E sing 21 n n 
C21 C22 16E sing 22 n n 
C22 C23 16E sing 23 n n 
C23 C24 16E sing 24 n n 
C24 C25 16E sing 25 n n 
C25 C26 16E sing 26 n n 
C26 O27 16E doub 27 n n 
C26 O28 16E sing 28 n n 
N03 H03 16E sing 29 n n 
C12 H121 16E sing 30 n n 
C12 H122 16E sing 31 n n 
C04 H04 16E sing 32 n n 
C05 H051 16E sing 33 n n 
C05 H052 16E sing 34 n n 
C06 H061 16E sing 35 n n 
C06 H062 16E sing 36 n n 
OXT HXT 16E sing 37 n n 
O11 H11 16E sing 38 n n 
C13 H131 16E sing 39 n n 
C13 H132 16E sing 40 n n 
C14 H141 16E sing 41 n n 
C14 H142 16E sing 42 n n 
C15 H151 16E sing 43 n n 
C15 H152 16E sing 44 n n 
C16 H161 16E sing 45 n n 
C16 H162 16E sing 46 n n 
C17 H171 16E sing 47 n n 
C17 H172 16E sing 48 n n 
C18 H181 16E sing 49 n n 
C18 H182 16E sing 50 n n 
C19 H191 16E sing 51 n n 
C19 H192 16E sing 52 n n 
C20 H201 16E sing 53 n n 
C20 H202 16E sing 54 n n 
C21 H211 16E sing 55 n n 
C21 H212 16E sing 56 n n 
C22 H221 16E sing 57 n n 
C22 H222 16E sing 58 n n 
C23 H231 16E sing 59 n n 
C23 H232 16E sing 60 n n 
C24 H241 16E sing 61 n n 
C24 H242 16E sing 62 n n 
C25 H251 16E sing 63 n n 
C25 H252 16E sing 64 n n 
O28 H28 16E sing 65 n n 
#
_atom_sites.entry_id                     4AKJ 
_atom_sites.fract_transf_matrix[1][1]    0.012704 
_atom_sites.fract_transf_matrix[1][2]    0.007335 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014669 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 IPH A 1 1023 1023 IPH IPH . 
F 4 16E B 1 1022 1022 16E 16E . 
G 5 ZN B 1 1030 1030 ZN ZN . 
H 6 CL B 1 1031 1031 CL CL . 
I 3 IPH C 1 1022 1022 IPH IPH . 
J 5 ZN D 1 1030 1030 ZN ZN . 
K 6 CL D 1 1031 1031 CL CL . 
L 7 HOH A 1 2001 2001 HOH HOH . 
L 7 HOH A 2 2002 2002 HOH HOH . 
L 7 HOH A 3 2003 2003 HOH HOH . 
L 7 HOH A 4 2004 2004 HOH HOH . 
L 7 HOH A 5 2005 2005 HOH HOH . 
L 7 HOH A 6 2006 2006 HOH HOH . 
L 7 HOH A 7 2007 2007 HOH HOH . 
L 7 HOH A 8 2008 2008 HOH HOH . 
L 7 HOH A 9 2009 2009 HOH HOH . 
L 7 HOH A 10 2010 2010 HOH HOH . 
L 7 HOH A 11 2011 2011 HOH HOH . 
L 7 HOH A 12 2012 2012 HOH HOH . 
L 7 HOH A 13 2013 2013 HOH HOH . 
L 7 HOH A 14 2014 2014 HOH HOH . 
M 7 HOH B 1 2001 2001 HOH HOH . 
M 7 HOH B 2 2002 2002 HOH HOH . 
M 7 HOH B 3 2003 2003 HOH HOH . 
M 7 HOH B 4 2004 2004 HOH HOH . 
M 7 HOH B 5 2005 2005 HOH HOH . 
M 7 HOH B 6 2006 2006 HOH HOH . 
M 7 HOH B 7 2007 2007 HOH HOH . 
M 7 HOH B 8 2008 2008 HOH HOH . 
M 7 HOH B 9 2009 2009 HOH HOH . 
M 7 HOH B 10 2010 2010 HOH HOH . 
M 7 HOH B 11 2011 2011 HOH HOH . 
M 7 HOH B 12 2012 2012 HOH HOH . 
M 7 HOH B 13 2013 2013 HOH HOH . 
M 7 HOH B 14 2014 2014 HOH HOH . 
N 7 HOH C 1 2001 2001 HOH HOH . 
N 7 HOH C 2 2002 2002 HOH HOH . 
N 7 HOH C 3 2003 2003 HOH HOH . 
N 7 HOH C 4 2004 2004 HOH HOH . 
N 7 HOH C 5 2005 2005 HOH HOH . 
N 7 HOH C 6 2006 2006 HOH HOH . 
N 7 HOH C 7 2007 2007 HOH HOH . 
N 7 HOH C 8 2008 2008 HOH HOH . 
N 7 HOH C 9 2009 2009 HOH HOH . 
N 7 HOH C 10 2010 2010 HOH HOH . 
N 7 HOH C 11 2011 2011 HOH HOH . 
O 7 HOH D 1 2001 2001 HOH HOH . 
O 7 HOH D 2 2002 2002 HOH HOH . 
O 7 HOH D 3 2003 2003 HOH HOH . 
O 7 HOH D 4 2004 2004 HOH HOH . 
O 7 HOH D 5 2005 2005 HOH HOH . 
O 7 HOH D 6 2006 2006 HOH HOH . 
O 7 HOH D 7 2007 2007 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 16E . . . F 4 18.575 13.048 17.78 1 55.53 ? O01 16E 1022 B 1 
HETATM 2 C C02 16E . . . F 4 19.613 12.439 17.579 1 60.03 ? C02 16E 1022 B 1 
HETATM 3 N N03 16E . . . F 4 20.114 11.722 18.755 1 71.15 ? N03 16E 1022 B 1 
HETATM 4 C C04 16E . . . F 4 21.315 10.866 18.897 1 84.64 ? C04 16E 1022 B 1 
HETATM 5 C C05 16E . . . F 4 20.791 9.453 19.118 1 91.65 ? C05 16E 1022 B 1 
HETATM 6 C C06 16E . . . F 4 19.923 8.954 17.972 1 90.47 ? C06 16E 1022 B 1 
HETATM 7 C C07 16E . . . F 4 19.627 7.488 18.199 1 98.37 ? C07 16E 1022 B 1 
HETATM 8 O O08 16E . . . F 4 18.457 7.167 18.366 1 110.7 ? O08 16E 1022 B 1 
HETATM 9 C C09 16E . . . F 4 22.406 10.96 17.848 1 84.59 ? C09 16E 1022 B 1 
HETATM 10 O O10 16E . . . F 4 22.287 10.481 16.673 1 75.63 ? O10 16E 1022 B 1 
HETATM 11 O O11 16E . . . F 4 23.484 11.535 18.197 1 77.65 ? O11 16E 1022 B 1 
HETATM 12 C C12 16E . . . F 4 20.21 12.508 16.171 1 54.44 ? C12 16E 1022 B 1 
HETATM 13 C C13 16E . . . F 4 20.797 13.892 15.949 1 48.48 ? C13 16E 1022 B 1 
HETATM 14 C C14 16E . . . F 4 21.6 13.932 14.676 1 47.76 ? C14 16E 1022 B 1 
HETATM 15 C C15 16E . . . F 4 20.719 13.781 13.434 1 45.77 ? C15 16E 1022 B 1 
HETATM 16 C C16 16E . . . F 4 20.779 15.026 12.569 1 44.58 ? C16 16E 1022 B 1 
HETATM 17 C C17 16E . . . F 4 20.057 16.142 13.282 1 47.49 ? C17 16E 1022 B 1 
HETATM 18 C C18 16E . . . F 4 19.658 17.223 12.271 1 51.23 ? C18 16E 1022 B 1 
HETATM 19 C C19 16E . . . F 4 19.707 18.645 12.816 1 51.01 ? C19 16E 1022 B 1 
HETATM 20 C C20 16E . . . F 4 18.977 18.727 14.167 1 48.95 ? C20 16E 1022 B 1 
HETATM 21 C C21 16E . . . F 4 18.575 20.179 14.43 1 52.55 ? C21 16E 1022 B 1 
HETATM 22 C C22 16E . . . F 4 17.091 20.318 14.761 1 53.09 ? C22 16E 1022 B 1 
HETATM 23 C C23 16E . . . F 4 16.318 21.147 13.737 1 56.87 ? C23 16E 1022 B 1 
HETATM 24 C C24 16E . . . F 4 15.269 20.373 12.953 1 69.25 ? C24 16E 1022 B 1 
HETATM 25 C C25 16E . . . F 4 14.467 19.322 13.742 1 74.53 ? C25 16E 1022 B 1 
HETATM 26 C C26 16E . . . F 4 14.193 18.034 12.99 1 72.99 ? C26 16E 1022 B 1 
HETATM 27 O O27 16E . . . F 4 15.074 17.097 12.928 1 58.76 ? O27 16E 1022 B 1 
HETATM 28 O O28 16E . . . F 4 13.051 17.916 12.441 1 71.03 ? O28 16E 1022 B 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#