data_4AKJ
#
_model_server_result.job_id            EOZrQ51hfpSmowd6L5RzDw 
_model_server_result.datetime_utc      '2024-11-13 15:08:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4akj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1023}' 
#
_entry.id    4AKJ 
#
_exptl.entry_id    4AKJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.111 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHENOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4AKJ 
_cell.length_a            78.717 
_cell.length_b            78.717 
_cell.length_c            40.551 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4AKJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,L,M 1 1,2,3 
C,D,I,J,K,N,O 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
covale ? covale1 B NZ LYS 29 B LYS 29 1_555 F C07 16E . B 16E 1022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 G ZN ZN . B ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc2 B NE2 HIS 10 B HIS 10 2_555 G ZN ZN . B ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc3 B NE2 HIS 10 B HIS 10 3_555 G ZN ZN . B ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc4 G ZN ZN . B ZN 1030 1_555 H CL CL . B CL 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc5 G ZN ZN . B ZN 1030 1_555 H CL CL . B CL 1031 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc6 G ZN ZN . B ZN 1030 1_555 H CL CL . B CL 1031 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc7 D NE2 HIS 10 D HIS 10 2_555 J ZN ZN . D ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc8 D NE2 HIS 10 D HIS 10 3_555 J ZN ZN . D ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc9 D NE2 HIS 10 D HIS 10 1_555 J ZN ZN . D ZN 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc10 J ZN ZN . D ZN 1030 1_555 K CL CL . D CL 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc11 J ZN ZN . D ZN 1030 1_555 K CL CL . D CL 1031 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc12 J ZN ZN . D ZN 1030 1_555 K CL CL . D CL 1031 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
#
_chem_comp.formula           'C6 H6 O' 
_chem_comp.formula_weight    94.111 
_chem_comp.id                IPH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHENOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IPH doub 223 n y 
C1 C6 IPH sing 224 n y 
C1 O1 IPH sing 225 n n 
C2 C3 IPH sing 226 n y 
C2 H2 IPH sing 227 n n 
C3 C4 IPH doub 228 n y 
C3 H3 IPH sing 229 n n 
C4 C5 IPH sing 230 n y 
C4 H4 IPH sing 231 n n 
C5 C6 IPH doub 232 n y 
C5 H5 IPH sing 233 n n 
C6 H6 IPH sing 234 n n 
O1 HO1 IPH sing 235 n n 
#
_atom_sites.entry_id                     4AKJ 
_atom_sites.fract_transf_matrix[1][1]    0.012704 
_atom_sites.fract_transf_matrix[1][2]    0.007335 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014669 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 IPH A 1 1023 1023 IPH IPH . 
F 4 16E B 1 1022 1022 16E 16E . 
G 5 ZN B 1 1030 1030 ZN ZN . 
H 6 CL B 1 1031 1031 CL CL . 
I 3 IPH C 1 1022 1022 IPH IPH . 
J 5 ZN D 1 1030 1030 ZN ZN . 
K 6 CL D 1 1031 1031 CL CL . 
L 7 HOH A 1 2001 2001 HOH HOH . 
L 7 HOH A 2 2002 2002 HOH HOH . 
L 7 HOH A 3 2003 2003 HOH HOH . 
L 7 HOH A 4 2004 2004 HOH HOH . 
L 7 HOH A 5 2005 2005 HOH HOH . 
L 7 HOH A 6 2006 2006 HOH HOH . 
L 7 HOH A 7 2007 2007 HOH HOH . 
L 7 HOH A 8 2008 2008 HOH HOH . 
L 7 HOH A 9 2009 2009 HOH HOH . 
L 7 HOH A 10 2010 2010 HOH HOH . 
L 7 HOH A 11 2011 2011 HOH HOH . 
L 7 HOH A 12 2012 2012 HOH HOH . 
L 7 HOH A 13 2013 2013 HOH HOH . 
L 7 HOH A 14 2014 2014 HOH HOH . 
M 7 HOH B 1 2001 2001 HOH HOH . 
M 7 HOH B 2 2002 2002 HOH HOH . 
M 7 HOH B 3 2003 2003 HOH HOH . 
M 7 HOH B 4 2004 2004 HOH HOH . 
M 7 HOH B 5 2005 2005 HOH HOH . 
M 7 HOH B 6 2006 2006 HOH HOH . 
M 7 HOH B 7 2007 2007 HOH HOH . 
M 7 HOH B 8 2008 2008 HOH HOH . 
M 7 HOH B 9 2009 2009 HOH HOH . 
M 7 HOH B 10 2010 2010 HOH HOH . 
M 7 HOH B 11 2011 2011 HOH HOH . 
M 7 HOH B 12 2012 2012 HOH HOH . 
M 7 HOH B 13 2013 2013 HOH HOH . 
M 7 HOH B 14 2014 2014 HOH HOH . 
N 7 HOH C 1 2001 2001 HOH HOH . 
N 7 HOH C 2 2002 2002 HOH HOH . 
N 7 HOH C 3 2003 2003 HOH HOH . 
N 7 HOH C 4 2004 2004 HOH HOH . 
N 7 HOH C 5 2005 2005 HOH HOH . 
N 7 HOH C 6 2006 2006 HOH HOH . 
N 7 HOH C 7 2007 2007 HOH HOH . 
N 7 HOH C 8 2008 2008 HOH HOH . 
N 7 HOH C 9 2009 2009 HOH HOH . 
N 7 HOH C 10 2010 2010 HOH HOH . 
N 7 HOH C 11 2011 2011 HOH HOH . 
O 7 HOH D 1 2001 2001 HOH HOH . 
O 7 HOH D 2 2002 2002 HOH HOH . 
O 7 HOH D 3 2003 2003 HOH HOH . 
O 7 HOH D 4 2004 2004 HOH HOH . 
O 7 HOH D 5 2005 2005 HOH HOH . 
O 7 HOH D 6 2006 2006 HOH HOH . 
O 7 HOH D 7 2007 2007 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IPH . . . E 3 5.107 9.452 9.737 1 26.79 ? C1 IPH 1023 A 1 
HETATM 2 C C2 IPH . . . E 3 5.126 8.055 9.833 1 27.3 ? C2 IPH 1023 A 1 
HETATM 3 C C3 IPH . . . E 3 4.819 7.333 8.676 1 25.72 ? C3 IPH 1023 A 1 
HETATM 4 C C4 IPH . . . E 3 4.473 8.01 7.507 1 25.49 ? C4 IPH 1023 A 1 
HETATM 5 C C5 IPH . . . E 3 4.45 9.395 7.4 1 27.3 ? C5 IPH 1023 A 1 
HETATM 6 C C6 IPH . . . E 3 4.764 10.108 8.531 1 27.72 ? C6 IPH 1023 A 1 
HETATM 7 O O1 IPH . . . E 3 5.403 10.197 10.83 1 26.49 ? O1 IPH 1023 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#