data_4AL1 # _model_server_result.job_id fJBx1WQJqAtiiRVm_oNxng _model_server_result.datetime_utc '2024-11-04 23:06:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4al1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4AL1 # _exptl.entry_id 4AL1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4AL1 _cell.length_a 76.623 _cell.length_b 76.623 _cell.length_c 123.349 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AL1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 133 n n C1 C2 BOG sing 134 n n C1 O5 BOG sing 135 n n C1 H1 BOG sing 136 n n O1 C1' BOG sing 137 n n C2 O2 BOG sing 138 n n C2 C3 BOG sing 139 n n C2 H2 BOG sing 140 n n O2 HO2 BOG sing 141 n n C3 O3 BOG sing 142 n n C3 C4 BOG sing 143 n n C3 H3 BOG sing 144 n n O3 HO3 BOG sing 145 n n C4 O4 BOG sing 146 n n C4 C5 BOG sing 147 n n C4 H4 BOG sing 148 n n O4 HO4 BOG sing 149 n n C5 O5 BOG sing 150 n n C5 C6 BOG sing 151 n n C5 H5 BOG sing 152 n n C6 O6 BOG sing 153 n n C6 H61 BOG sing 154 n n C6 H62 BOG sing 155 n n O6 HO6 BOG sing 156 n n C1' C2' BOG sing 157 n n C1' "H1'1" BOG sing 158 n n C1' "H1'2" BOG sing 159 n n C2' C3' BOG sing 160 n n C2' "H2'1" BOG sing 161 n n C2' "H2'2" BOG sing 162 n n C3' C4' BOG sing 163 n n C3' "H3'1" BOG sing 164 n n C3' "H3'2" BOG sing 165 n n C4' C5' BOG sing 166 n n C4' "H4'1" BOG sing 167 n n C4' "H4'2" BOG sing 168 n n C5' C6' BOG sing 169 n n C5' "H5'1" BOG sing 170 n n C5' "H5'2" BOG sing 171 n n C6' C7' BOG sing 172 n n C6' "H6'1" BOG sing 173 n n C6' "H6'2" BOG sing 174 n n C7' C8' BOG sing 175 n n C7' "H7'1" BOG sing 176 n n C7' "H7'2" BOG sing 177 n n C8' "H8'1" BOG sing 178 n n C8' "H8'2" BOG sing 179 n n C8' "H8'3" BOG sing 180 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4AL1 _atom_sites.fract_transf_matrix[1][1] 0.013051 _atom_sites.fract_transf_matrix[1][2] 0.007535 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 201 201 BOG BOG . C 3 PLM A 1 202 202 PLM PLM . D 3 PLM A 1 203 203 PLM PLM . E 4 SO4 A 1 204 204 SO4 SO4 . F 5 48T A 1 1153 1153 48T 48T . G 6 HOH A 1 2001 2001 HOH HOH . G 6 HOH A 2 2002 2002 HOH HOH . G 6 HOH A 3 2003 2003 HOH HOH . G 6 HOH A 4 2004 2004 HOH HOH . G 6 HOH A 5 2005 2005 HOH HOH . G 6 HOH A 6 2006 2006 HOH HOH . G 6 HOH A 7 2007 2007 HOH HOH . G 6 HOH A 8 2008 2008 HOH HOH . G 6 HOH A 9 2009 2009 HOH HOH . G 6 HOH A 10 2010 2010 HOH HOH . G 6 HOH A 11 2011 2011 HOH HOH . G 6 HOH A 12 2012 2012 HOH HOH . G 6 HOH A 13 2013 2013 HOH HOH . G 6 HOH A 14 2014 2014 HOH HOH . G 6 HOH A 15 2015 2015 HOH HOH . G 6 HOH A 16 2016 2016 HOH HOH . G 6 HOH A 17 2017 2017 HOH HOH . G 6 HOH A 18 2018 2018 HOH HOH . G 6 HOH A 19 2019 2019 HOH HOH . G 6 HOH A 20 2020 2020 HOH HOH . G 6 HOH A 21 2021 2021 HOH HOH . G 6 HOH A 22 2022 2022 HOH HOH . G 6 HOH A 23 2023 2023 HOH HOH . G 6 HOH A 24 2024 2024 HOH HOH . G 6 HOH A 25 2025 2025 HOH HOH . G 6 HOH A 26 2026 2026 HOH HOH . G 6 HOH A 27 2027 2027 HOH HOH . G 6 HOH A 28 2028 2028 HOH HOH . G 6 HOH A 29 2029 2029 HOH HOH . G 6 HOH A 30 2030 2030 HOH HOH . G 6 HOH A 31 2031 2031 HOH HOH . G 6 HOH A 32 2032 2032 HOH HOH . G 6 HOH A 33 2033 2033 HOH HOH . G 6 HOH A 34 2034 2034 HOH HOH . G 6 HOH A 35 2035 2035 HOH HOH . G 6 HOH A 36 2036 2036 HOH HOH . G 6 HOH A 37 2037 2037 HOH HOH . G 6 HOH A 38 2038 2038 HOH HOH . G 6 HOH A 39 2039 2039 HOH HOH . G 6 HOH A 40 2040 2040 HOH HOH . G 6 HOH A 41 2041 2041 HOH HOH . G 6 HOH A 42 2042 2042 HOH HOH . G 6 HOH A 43 2043 2043 HOH HOH . G 6 HOH A 44 2044 2044 HOH HOH . G 6 HOH A 45 2045 2045 HOH HOH . G 6 HOH A 46 2046 2046 HOH HOH . G 6 HOH A 47 2047 2047 HOH HOH . G 6 HOH A 48 2048 2048 HOH HOH . G 6 HOH A 49 2049 2049 HOH HOH . G 6 HOH A 50 2050 2050 HOH HOH . G 6 HOH A 51 2051 2051 HOH HOH . G 6 HOH A 52 2052 2052 HOH HOH . G 6 HOH A 53 2053 2053 HOH HOH . G 6 HOH A 54 2054 2054 HOH HOH . G 6 HOH A 55 2055 2055 HOH HOH . G 6 HOH A 56 2056 2056 HOH HOH . G 6 HOH A 57 2057 2057 HOH HOH . G 6 HOH A 58 2058 2058 HOH HOH . G 6 HOH A 59 2059 2059 HOH HOH . G 6 HOH A 60 2060 2060 HOH HOH . G 6 HOH A 61 2061 2061 HOH HOH . G 6 HOH A 62 2062 2062 HOH HOH . G 6 HOH A 63 2063 2063 HOH HOH . G 6 HOH A 64 2064 2064 HOH HOH . G 6 HOH A 65 2065 2065 HOH HOH . G 6 HOH A 66 2066 2066 HOH HOH . G 6 HOH A 67 2067 2067 HOH HOH . G 6 HOH A 68 2068 2068 HOH HOH . G 6 HOH A 69 2069 2069 HOH HOH . G 6 HOH A 70 2070 2070 HOH HOH . G 6 HOH A 71 2071 2071 HOH HOH . G 6 HOH A 72 2072 2072 HOH HOH . G 6 HOH A 73 2073 2073 HOH HOH . G 6 HOH A 74 2074 2074 HOH HOH . G 6 HOH A 75 2075 2075 HOH HOH . G 6 HOH A 76 2076 2076 HOH HOH . G 6 HOH A 77 2077 2077 HOH HOH . G 6 HOH A 78 2078 2078 HOH HOH . G 6 HOH A 79 2079 2079 HOH HOH . G 6 HOH A 80 2080 2080 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . B 2 11.089 -15.822 -11.07 1 61.33 ? C1 BOG 201 A 1 HETATM 2 O O1 BOG . . . B 2 10.46 -16.356 -9.9 1 60.73 ? O1 BOG 201 A 1 HETATM 3 C C2 BOG . . . B 2 10.424 -14.484 -11.419 1 61.63 ? C2 BOG 201 A 1 HETATM 4 O O2 BOG . . . B 2 9.098 -14.695 -11.912 1 61.28 ? O2 BOG 201 A 1 HETATM 5 C C3 BOG . . . B 2 11.203 -13.69 -12.464 1 62.12 ? C3 BOG 201 A 1 HETATM 6 O O3 BOG . . . B 2 10.67 -12.365 -12.57 1 62.56 ? O3 BOG 201 A 1 HETATM 7 C C4 BOG . . . B 2 12.673 -13.598 -12.09 1 62.12 ? C4 BOG 201 A 1 HETATM 8 O O4 BOG . . . B 2 13.37 -12.975 -13.173 1 62.69 ? O4 BOG 201 A 1 HETATM 9 C C5 BOG . . . B 2 13.247 -14.99 -11.813 1 61.92 ? C5 BOG 201 A 1 HETATM 10 O O5 BOG . . . B 2 12.484 -15.634 -10.783 1 61.7 ? O5 BOG 201 A 1 HETATM 11 C C6 BOG . . . B 2 14.714 -14.936 -11.382 1 62.18 ? C6 BOG 201 A 1 HETATM 12 O O6 BOG . . . B 2 15.53 -14.274 -12.363 1 61.32 ? O6 BOG 201 A 1 HETATM 13 C C1' BOG . . . B 2 9.67 -17.523 -10.134 1 59.66 ? C1' BOG 201 A 1 HETATM 14 C C2' BOG . . . B 2 9.503 -18.314 -8.838 1 58.66 ? C2' BOG 201 A 1 HETATM 15 C C3' BOG . . . B 2 8.55 -17.633 -7.863 1 57.57 ? C3' BOG 201 A 1 HETATM 16 C C4' BOG . . . B 2 8.099 -18.606 -6.78 1 57.13 ? C4' BOG 201 A 1 HETATM 17 C C5' BOG . . . B 2 8.518 -18.123 -5.398 1 56.87 ? C5' BOG 201 A 1 HETATM 18 C C6' BOG . . . B 2 8.67 -19.285 -4.422 1 56.87 ? C6' BOG 201 A 1 HETATM 19 C C7' BOG . . . B 2 9.668 -18.949 -3.319 1 57.15 ? C7' BOG 201 A 1 HETATM 20 C C8' BOG . . . B 2 9.103 -19.301 -1.96 1 56.93 ? C8' BOG 201 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #