data_4ALL # _model_server_result.job_id EINGRbQ3gmuqEMINZC0q3Q _model_server_result.datetime_utc '2024-10-30 03:31:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4all # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1257}' # _entry.id 4ALL # _exptl.entry_id 4ALL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ALL _cell.length_a 83.52 _cell.length_b 111.91 _cell.length_c 111.64 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ALL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 L N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 224 n n PA O2A NAP sing 225 n n PA O5B NAP sing 226 n n PA O3 NAP sing 227 n n O2A HOA2 NAP sing 228 n n O5B C5B NAP sing 229 n n C5B C4B NAP sing 230 n n C5B H51A NAP sing 231 n n C5B H52A NAP sing 232 n n C4B O4B NAP sing 233 n n C4B C3B NAP sing 234 n n C4B H4B NAP sing 235 n n O4B C1B NAP sing 236 n n C3B O3B NAP sing 237 n n C3B C2B NAP sing 238 n n C3B H3B NAP sing 239 n n O3B HO3A NAP sing 240 n n C2B O2B NAP sing 241 n n C2B C1B NAP sing 242 n n C2B H2B NAP sing 243 n n O2B P2B NAP sing 244 n n C1B N9A NAP sing 245 n n C1B H1B NAP sing 246 n n N9A C8A NAP sing 247 n y N9A C4A NAP sing 248 n y C8A N7A NAP doub 249 n y C8A H8A NAP sing 250 n n N7A C5A NAP sing 251 n y C5A C6A NAP sing 252 n y C5A C4A NAP doub 253 n y C6A N6A NAP sing 254 n n C6A N1A NAP doub 255 n y N6A H61A NAP sing 256 n n N6A H62A NAP sing 257 n n N1A C2A NAP sing 258 n y C2A N3A NAP doub 259 n y C2A H2A NAP sing 260 n n N3A C4A NAP sing 261 n y O3 PN NAP sing 262 n n PN O1N NAP doub 263 n n PN O2N NAP sing 264 n n PN O5D NAP sing 265 n n O5D C5D NAP sing 266 n n C5D C4D NAP sing 267 n n C5D H51N NAP sing 268 n n C5D H52N NAP sing 269 n n C4D O4D NAP sing 270 n n C4D C3D NAP sing 271 n n C4D H4D NAP sing 272 n n O4D C1D NAP sing 273 n n C3D O3D NAP sing 274 n n C3D C2D NAP sing 275 n n C3D H3D NAP sing 276 n n O3D HO3N NAP sing 277 n n C2D O2D NAP sing 278 n n C2D C1D NAP sing 279 n n C2D H2D NAP sing 280 n n O2D HO2N NAP sing 281 n n C1D N1N NAP sing 282 n n C1D H1D NAP sing 283 n n N1N C2N NAP sing 284 n y N1N C6N NAP doub 285 n y C2N C3N NAP doub 286 n y C2N H2N NAP sing 287 n n C3N C7N NAP sing 288 n n C3N C4N NAP sing 289 n y C7N O7N NAP doub 290 n n C7N N7N NAP sing 291 n n N7N H71N NAP sing 292 n n N7N H72N NAP sing 293 n n C4N C5N NAP doub 294 n y C4N H4N NAP sing 295 n n C5N C6N NAP sing 296 n y C5N H5N NAP sing 297 n n C6N H6N NAP sing 298 n n P2B O1X NAP doub 299 n n P2B O2X NAP sing 300 n n P2B O3X NAP sing 301 n n O2X HOP2 NAP sing 302 n n O3X HOP3 NAP sing 303 n n # _atom_sites.entry_id 4ALL _atom_sites.fract_transf_matrix[1][1] 0.011973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TCL A 1 1257 1257 TCL TCL . F 3 NAP A 1 1258 1258 NAP NAP . G 3 NAP B 1 1257 1257 NAP NAP . H 2 TCL B 1 1258 1258 TCL TCL . I 3 NAP C 1 1257 1257 NAP NAP . J 2 TCL C 1 1258 1258 TCL TCL . K 2 TCL D 1 1257 1257 TCL TCL . L 3 NAP D 1 1258 1258 NAP NAP . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . O 4 HOH C 1 2001 2001 HOH HOH . P 4 HOH D 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . G 3 -19.752 -39.766 -47.117 1 53.5 ? PA NAP 1257 B 1 HETATM 2 O O1A NAP . . . G 3 -21.034 -40.464 -47.31 1 54.33 ? O1A NAP 1257 B 1 HETATM 3 O O2A NAP . . . G 3 -18.908 -39.777 -48.327 1 53.41 ? O2A NAP 1257 B 1 HETATM 4 O O5B NAP . . . G 3 -20.039 -38.267 -46.661 1 57.3 ? O5B NAP 1257 B 1 HETATM 5 C C5B NAP . . . G 3 -18.968 -37.347 -46.547 1 59.17 ? C5B NAP 1257 B 1 HETATM 6 C C4B NAP . . . G 3 -19.464 -35.937 -46.884 1 60 ? C4B NAP 1257 B 1 HETATM 7 O O4B NAP . . . G 3 -18.47 -34.996 -46.51 1 61.45 ? O4B NAP 1257 B 1 HETATM 8 C C3B NAP . . . G 3 -19.728 -35.779 -48.38 1 60.07 ? C3B NAP 1257 B 1 HETATM 9 O O3B NAP . . . G 3 -21.035 -35.298 -48.628 1 54.74 ? O3B NAP 1257 B 1 HETATM 10 C C2B NAP . . . G 3 -18.66 -34.8 -48.816 1 62.54 ? C2B NAP 1257 B 1 HETATM 11 O O2B NAP . . . G 3 -19.134 -33.923 -49.806 1 69.68 ? O2B NAP 1257 B 1 HETATM 12 C C1B NAP . . . G 3 -18.444 -34.043 -47.526 1 61.87 ? C1B NAP 1257 B 1 HETATM 13 N N9A NAP . . . G 3 -17.253 -33.201 -47.582 1 62.17 ? N9A NAP 1257 B 1 HETATM 14 C C8A NAP . . . G 3 -15.908 -33.496 -47.568 1 63.06 ? C8A NAP 1257 B 1 HETATM 15 N N7A NAP . . . G 3 -15.217 -32.323 -47.676 1 62.33 ? N7A NAP 1257 B 1 HETATM 16 C C5A NAP . . . G 3 -16.124 -31.299 -47.763 1 62.42 ? C5A NAP 1257 B 1 HETATM 17 C C6A NAP . . . G 3 -16.025 -29.911 -47.884 1 61.78 ? C6A NAP 1257 B 1 HETATM 18 N N6A NAP . . . G 3 -14.853 -29.273 -47.946 1 62.01 ? N6A NAP 1257 B 1 HETATM 19 N N1A NAP . . . G 3 -17.186 -29.172 -47.938 1 61.79 ? N1A NAP 1257 B 1 HETATM 20 C C2A NAP . . . G 3 -18.437 -29.752 -47.876 1 61.39 ? C2A NAP 1257 B 1 HETATM 21 N N3A NAP . . . G 3 -18.542 -31.108 -47.756 1 61.01 ? N3A NAP 1257 B 1 HETATM 22 C C4A NAP . . . G 3 -17.403 -31.853 -47.705 1 62.22 ? C4A NAP 1257 B 1 HETATM 23 O O3 NAP . . . G 3 -19.069 -40.328 -45.778 1 53.22 ? O3 NAP 1257 B 1 HETATM 24 P PN NAP . . . G 3 -19.767 -40.632 -44.358 1 51.94 ? PN NAP 1257 B 1 HETATM 25 O O1N NAP . . . G 3 -19.216 -41.908 -43.894 1 55.08 ? O1N NAP 1257 B 1 HETATM 26 O O2N NAP . . . G 3 -21.241 -40.47 -44.388 1 52.73 ? O2N NAP 1257 B 1 HETATM 27 O O5D NAP . . . G 3 -19.096 -39.501 -43.47 1 53.73 ? O5D NAP 1257 B 1 HETATM 28 C C5D NAP . . . G 3 -19.874 -38.661 -42.642 1 55.97 ? C5D NAP 1257 B 1 HETATM 29 C C4D NAP . . . G 3 -19.146 -38.384 -41.334 1 56.76 ? C4D NAP 1257 B 1 HETATM 30 O O4D NAP . . . G 3 -19.172 -39.533 -40.502 1 55.89 ? O4D NAP 1257 B 1 HETATM 31 C C3D NAP . . . G 3 -17.677 -38.037 -41.587 1 57.15 ? C3D NAP 1257 B 1 HETATM 32 O O3D NAP . . . G 3 -17.34 -36.923 -40.801 1 58.3 ? O3D NAP 1257 B 1 HETATM 33 C C2D NAP . . . G 3 -16.881 -39.242 -41.122 1 56.56 ? C2D NAP 1257 B 1 HETATM 34 O O2D NAP . . . G 3 -15.639 -38.872 -40.564 1 55.81 ? O2D NAP 1257 B 1 HETATM 35 C C1D NAP . . . G 3 -17.833 -39.842 -40.087 1 56.65 ? C1D NAP 1257 B 1 HETATM 36 N N1N NAP . . . G 3 -17.668 -41.285 -39.799 1 55.2 ? N1N NAP 1257 B 1 HETATM 37 C C2N NAP . . . G 3 -17.85 -42.239 -40.769 1 55.7 ? C2N NAP 1257 B 1 HETATM 38 C C3N NAP . . . G 3 -17.724 -43.604 -40.466 1 56.35 ? C3N NAP 1257 B 1 HETATM 39 C C7N NAP . . . G 3 -17.917 -44.671 -41.527 1 55.8 ? C7N NAP 1257 B 1 HETATM 40 O O7N NAP . . . G 3 -17.775 -46.025 -41.204 1 54.93 ? O7N NAP 1257 B 1 HETATM 41 N N7N NAP . . . G 3 -18.22 -44.333 -42.778 1 55.3 ? N7N NAP 1257 B 1 HETATM 42 C C4N NAP . . . G 3 -17.423 -43.964 -39.149 1 56.78 ? C4N NAP 1257 B 1 HETATM 43 C C5N NAP . . . G 3 -17.237 -42.977 -38.171 1 56.01 ? C5N NAP 1257 B 1 HETATM 44 C C6N NAP . . . G 3 -17.366 -41.639 -38.514 1 54.54 ? C6N NAP 1257 B 1 HETATM 45 P P2B NAP . . . G 3 -19.241 -34.316 -51.378 1 74.71 ? P2B NAP 1257 B 1 HETATM 46 O O1X NAP . . . G 3 -20.676 -33.99 -51.801 1 73.54 ? O1X NAP 1257 B 1 HETATM 47 O O2X NAP . . . G 3 -18.19 -33.529 -52.148 1 73.95 ? O2X NAP 1257 B 1 HETATM 48 O O3X NAP . . . G 3 -18.976 -35.795 -51.599 1 72.92 ? O3X NAP 1257 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #