data_4ALL # _model_server_result.job_id MoyYTZRephK6GNZLS_HPkg _model_server_result.datetime_utc '2024-11-26 02:49:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4all # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1257}' # _entry.id 4ALL # _exptl.entry_id 4ALL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ALL _cell.length_a 83.52 _cell.length_b 111.91 _cell.length_c 111.64 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ALL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 L N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 224 n n PA O2A NAP sing 225 n n PA O5B NAP sing 226 n n PA O3 NAP sing 227 n n O2A HOA2 NAP sing 228 n n O5B C5B NAP sing 229 n n C5B C4B NAP sing 230 n n C5B H51A NAP sing 231 n n C5B H52A NAP sing 232 n n C4B O4B NAP sing 233 n n C4B C3B NAP sing 234 n n C4B H4B NAP sing 235 n n O4B C1B NAP sing 236 n n C3B O3B NAP sing 237 n n C3B C2B NAP sing 238 n n C3B H3B NAP sing 239 n n O3B HO3A NAP sing 240 n n C2B O2B NAP sing 241 n n C2B C1B NAP sing 242 n n C2B H2B NAP sing 243 n n O2B P2B NAP sing 244 n n C1B N9A NAP sing 245 n n C1B H1B NAP sing 246 n n N9A C8A NAP sing 247 n y N9A C4A NAP sing 248 n y C8A N7A NAP doub 249 n y C8A H8A NAP sing 250 n n N7A C5A NAP sing 251 n y C5A C6A NAP sing 252 n y C5A C4A NAP doub 253 n y C6A N6A NAP sing 254 n n C6A N1A NAP doub 255 n y N6A H61A NAP sing 256 n n N6A H62A NAP sing 257 n n N1A C2A NAP sing 258 n y C2A N3A NAP doub 259 n y C2A H2A NAP sing 260 n n N3A C4A NAP sing 261 n y O3 PN NAP sing 262 n n PN O1N NAP doub 263 n n PN O2N NAP sing 264 n n PN O5D NAP sing 265 n n O5D C5D NAP sing 266 n n C5D C4D NAP sing 267 n n C5D H51N NAP sing 268 n n C5D H52N NAP sing 269 n n C4D O4D NAP sing 270 n n C4D C3D NAP sing 271 n n C4D H4D NAP sing 272 n n O4D C1D NAP sing 273 n n C3D O3D NAP sing 274 n n C3D C2D NAP sing 275 n n C3D H3D NAP sing 276 n n O3D HO3N NAP sing 277 n n C2D O2D NAP sing 278 n n C2D C1D NAP sing 279 n n C2D H2D NAP sing 280 n n O2D HO2N NAP sing 281 n n C1D N1N NAP sing 282 n n C1D H1D NAP sing 283 n n N1N C2N NAP sing 284 n y N1N C6N NAP doub 285 n y C2N C3N NAP doub 286 n y C2N H2N NAP sing 287 n n C3N C7N NAP sing 288 n n C3N C4N NAP sing 289 n y C7N O7N NAP doub 290 n n C7N N7N NAP sing 291 n n N7N H71N NAP sing 292 n n N7N H72N NAP sing 293 n n C4N C5N NAP doub 294 n y C4N H4N NAP sing 295 n n C5N C6N NAP sing 296 n y C5N H5N NAP sing 297 n n C6N H6N NAP sing 298 n n P2B O1X NAP doub 299 n n P2B O2X NAP sing 300 n n P2B O3X NAP sing 301 n n O2X HOP2 NAP sing 302 n n O3X HOP3 NAP sing 303 n n # _atom_sites.entry_id 4ALL _atom_sites.fract_transf_matrix[1][1] 0.011973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TCL A 1 1257 1257 TCL TCL . F 3 NAP A 1 1258 1258 NAP NAP . G 3 NAP B 1 1257 1257 NAP NAP . H 2 TCL B 1 1258 1258 TCL TCL . I 3 NAP C 1 1257 1257 NAP NAP . J 2 TCL C 1 1258 1258 TCL TCL . K 2 TCL D 1 1257 1257 TCL TCL . L 3 NAP D 1 1258 1258 NAP NAP . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . O 4 HOH C 1 2001 2001 HOH HOH . P 4 HOH D 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . I 3 -33.177 -41.196 -3.368 1 61.36 ? PA NAP 1257 C 1 HETATM 2 O O1A NAP . . . I 3 -34.406 -40.427 -3.638 1 62.66 ? O1A NAP 1257 C 1 HETATM 3 O O2A NAP . . . I 3 -32.937 -41.374 -1.92 1 60.6 ? O2A NAP 1257 C 1 HETATM 4 O O5B NAP . . . I 3 -33.234 -42.593 -4.136 1 63.61 ? O5B NAP 1257 C 1 HETATM 5 C C5B NAP . . . I 3 -32.331 -43.618 -3.746 1 68.21 ? C5B NAP 1257 C 1 HETATM 6 C C4B NAP . . . I 3 -32.988 -44.997 -3.643 1 69.97 ? C4B NAP 1257 C 1 HETATM 7 O O4B NAP . . . I 3 -32.018 -45.992 -3.355 1 70.19 ? O4B NAP 1257 C 1 HETATM 8 C C3B NAP . . . I 3 -34.027 -45.025 -2.513 1 72.03 ? C3B NAP 1257 C 1 HETATM 9 O O3B NAP . . . I 3 -35.261 -45.553 -2.952 1 70.28 ? O3B NAP 1257 C 1 HETATM 10 C C2B NAP . . . I 3 -33.445 -45.942 -1.466 1 73.99 ? C2B NAP 1257 C 1 HETATM 11 O O2B NAP . . . I 3 -34.431 -46.693 -0.796 1 78.06 ? O2B NAP 1257 C 1 HETATM 12 C C1B NAP . . . I 3 -32.689 -46.825 -2.431 1 72.64 ? C1B NAP 1257 C 1 HETATM 13 N N9A NAP . . . I 3 -31.94 -47.882 -1.736 1 71.94 ? N9A NAP 1257 C 1 HETATM 14 C C8A NAP . . . I 3 -30.876 -47.781 -0.886 1 71.09 ? C8A NAP 1257 C 1 HETATM 15 N N7A NAP . . . I 3 -30.567 -49.039 -0.496 1 71.03 ? N7A NAP 1257 C 1 HETATM 16 C C5A NAP . . . I 3 -31.42 -49.914 -1.073 1 70.8 ? C5A NAP 1257 C 1 HETATM 17 C C6A NAP . . . I 3 -31.543 -51.291 -1.024 1 70.38 ? C6A NAP 1257 C 1 HETATM 18 N N6A NAP . . . I 3 -30.708 -52 -0.274 1 70.88 ? N6A NAP 1257 C 1 HETATM 19 N N1A NAP . . . I 3 -32.546 -51.912 -1.74 1 70.59 ? N1A NAP 1257 C 1 HETATM 20 C C2A NAP . . . I 3 -33.43 -51.173 -2.513 1 70.74 ? C2A NAP 1257 C 1 HETATM 21 N N3A NAP . . . I 3 -33.302 -49.805 -2.565 1 70.05 ? N3A NAP 1257 C 1 HETATM 22 C C4A NAP . . . I 3 -32.307 -49.196 -1.853 1 71.44 ? C4A NAP 1257 C 1 HETATM 23 O O3 NAP . . . I 3 -31.937 -40.465 -4.071 1 62.7 ? O3 NAP 1257 C 1 HETATM 24 P PN NAP . . . I 3 -31.562 -40.251 -5.627 1 63.79 ? PN NAP 1257 C 1 HETATM 25 O O1N NAP . . . I 3 -30.71 -39.048 -5.639 1 65.42 ? O1N NAP 1257 C 1 HETATM 26 O O2N NAP . . . I 3 -32.73 -40.344 -6.55 1 61.41 ? O2N NAP 1257 C 1 HETATM 27 O O5D NAP . . . I 3 -30.507 -41.471 -5.815 1 65.67 ? O5D NAP 1257 C 1 HETATM 28 C C5D NAP . . . I 3 -30.619 -42.557 -6.725 1 64.34 ? C5D NAP 1257 C 1 HETATM 29 C C4D NAP . . . I 3 -29.366 -42.745 -7.595 1 64.11 ? C4D NAP 1257 C 1 HETATM 30 O O4D NAP . . . I 3 -28.902 -41.527 -8.159 1 63.95 ? O4D NAP 1257 C 1 HETATM 31 C C3D NAP . . . I 3 -28.174 -43.346 -6.868 1 63.65 ? C3D NAP 1257 C 1 HETATM 32 O O3D NAP . . . I 3 -27.626 -44.355 -7.703 1 63.71 ? O3D NAP 1257 C 1 HETATM 33 C C2D NAP . . . I 3 -27.222 -42.171 -6.705 1 63.38 ? C2D NAP 1257 C 1 HETATM 34 O O2D NAP . . . I 3 -25.87 -42.572 -6.595 1 64.64 ? O2D NAP 1257 C 1 HETATM 35 C C1D NAP . . . I 3 -27.5 -41.436 -8 1 63.16 ? C1D NAP 1257 C 1 HETATM 36 N N1N NAP . . . I 3 -27.051 -40.036 -8.118 1 61.78 ? N1N NAP 1257 C 1 HETATM 37 C C2N NAP . . . I 3 -27.706 -39.028 -7.457 1 61.15 ? C2N NAP 1257 C 1 HETATM 38 C C3N NAP . . . I 3 -27.281 -37.711 -7.62 1 60.28 ? C3N NAP 1257 C 1 HETATM 39 C C7N NAP . . . I 3 -27.956 -36.56 -6.909 1 59.23 ? C7N NAP 1257 C 1 HETATM 40 O O7N NAP . . . I 3 -27.448 -35.265 -7.135 1 57.96 ? O7N NAP 1257 C 1 HETATM 41 N N7N NAP . . . I 3 -28.992 -36.765 -6.081 1 57.12 ? N7N NAP 1257 C 1 HETATM 42 C C4N NAP . . . I 3 -26.199 -37.47 -8.471 1 61.07 ? C4N NAP 1257 C 1 HETATM 43 C C5N NAP . . . I 3 -25.549 -38.501 -9.148 1 59.82 ? C5N NAP 1257 C 1 HETATM 44 C C6N NAP . . . I 3 -25.997 -39.788 -8.961 1 60.29 ? C6N NAP 1257 C 1 HETATM 45 P P2B NAP . . . I 3 -35.02 -46.31 0.66 1 82.39 ? P2B NAP 1257 C 1 HETATM 46 O O1X NAP . . . I 3 -36.468 -46.776 0.636 1 83.02 ? O1X NAP 1257 C 1 HETATM 47 O O2X NAP . . . I 3 -34.305 -47.058 1.768 1 81.87 ? O2X NAP 1257 C 1 HETATM 48 O O3X NAP . . . I 3 -34.939 -44.815 0.919 1 81.43 ? O3X NAP 1257 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #