data_4ALL
#
_model_server_result.job_id            N4ToEpnuRf3q3aEzZ8xbag 
_model_server_result.datetime_utc      '2024-11-26 02:51:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4all 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1258}' 
#
_entry.id    4ALL 
#
_exptl.entry_id    4ALL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ALL 
_cell.length_a            83.52 
_cell.length_b            111.91 
_cell.length_c            111.64 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ALL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 L N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 224 n n 
PA O2A NAP sing 225 n n 
PA O5B NAP sing 226 n n 
PA O3 NAP sing 227 n n 
O2A HOA2 NAP sing 228 n n 
O5B C5B NAP sing 229 n n 
C5B C4B NAP sing 230 n n 
C5B H51A NAP sing 231 n n 
C5B H52A NAP sing 232 n n 
C4B O4B NAP sing 233 n n 
C4B C3B NAP sing 234 n n 
C4B H4B NAP sing 235 n n 
O4B C1B NAP sing 236 n n 
C3B O3B NAP sing 237 n n 
C3B C2B NAP sing 238 n n 
C3B H3B NAP sing 239 n n 
O3B HO3A NAP sing 240 n n 
C2B O2B NAP sing 241 n n 
C2B C1B NAP sing 242 n n 
C2B H2B NAP sing 243 n n 
O2B P2B NAP sing 244 n n 
C1B N9A NAP sing 245 n n 
C1B H1B NAP sing 246 n n 
N9A C8A NAP sing 247 n y 
N9A C4A NAP sing 248 n y 
C8A N7A NAP doub 249 n y 
C8A H8A NAP sing 250 n n 
N7A C5A NAP sing 251 n y 
C5A C6A NAP sing 252 n y 
C5A C4A NAP doub 253 n y 
C6A N6A NAP sing 254 n n 
C6A N1A NAP doub 255 n y 
N6A H61A NAP sing 256 n n 
N6A H62A NAP sing 257 n n 
N1A C2A NAP sing 258 n y 
C2A N3A NAP doub 259 n y 
C2A H2A NAP sing 260 n n 
N3A C4A NAP sing 261 n y 
O3 PN NAP sing 262 n n 
PN O1N NAP doub 263 n n 
PN O2N NAP sing 264 n n 
PN O5D NAP sing 265 n n 
O5D C5D NAP sing 266 n n 
C5D C4D NAP sing 267 n n 
C5D H51N NAP sing 268 n n 
C5D H52N NAP sing 269 n n 
C4D O4D NAP sing 270 n n 
C4D C3D NAP sing 271 n n 
C4D H4D NAP sing 272 n n 
O4D C1D NAP sing 273 n n 
C3D O3D NAP sing 274 n n 
C3D C2D NAP sing 275 n n 
C3D H3D NAP sing 276 n n 
O3D HO3N NAP sing 277 n n 
C2D O2D NAP sing 278 n n 
C2D C1D NAP sing 279 n n 
C2D H2D NAP sing 280 n n 
O2D HO2N NAP sing 281 n n 
C1D N1N NAP sing 282 n n 
C1D H1D NAP sing 283 n n 
N1N C2N NAP sing 284 n y 
N1N C6N NAP doub 285 n y 
C2N C3N NAP doub 286 n y 
C2N H2N NAP sing 287 n n 
C3N C7N NAP sing 288 n n 
C3N C4N NAP sing 289 n y 
C7N O7N NAP doub 290 n n 
C7N N7N NAP sing 291 n n 
N7N H71N NAP sing 292 n n 
N7N H72N NAP sing 293 n n 
C4N C5N NAP doub 294 n y 
C4N H4N NAP sing 295 n n 
C5N C6N NAP sing 296 n y 
C5N H5N NAP sing 297 n n 
C6N H6N NAP sing 298 n n 
P2B O1X NAP doub 299 n n 
P2B O2X NAP sing 300 n n 
P2B O3X NAP sing 301 n n 
O2X HOP2 NAP sing 302 n n 
O3X HOP3 NAP sing 303 n n 
#
_atom_sites.entry_id                     4ALL 
_atom_sites.fract_transf_matrix[1][1]    0.011973 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008936 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008957 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 TCL A 1 1257 1257 TCL TCL . 
F 3 NAP A 1 1258 1258 NAP NAP . 
G 3 NAP B 1 1257 1257 NAP NAP . 
H 2 TCL B 1 1258 1258 TCL TCL . 
I 3 NAP C 1 1257 1257 NAP NAP . 
J 2 TCL C 1 1258 1258 TCL TCL . 
K 2 TCL D 1 1257 1257 TCL TCL . 
L 3 NAP D 1 1258 1258 NAP NAP . 
M 4 HOH A 1 2001 2001 HOH HOH . 
M 4 HOH A 2 2002 2002 HOH HOH . 
M 4 HOH A 3 2003 2003 HOH HOH . 
M 4 HOH A 4 2004 2004 HOH HOH . 
N 4 HOH B 1 2001 2001 HOH HOH . 
N 4 HOH B 2 2002 2002 HOH HOH . 
N 4 HOH B 3 2003 2003 HOH HOH . 
O 4 HOH C 1 2001 2001 HOH HOH . 
P 4 HOH D 1 2001 2001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . F 3 8.089 -20.218 -23.626 1 56.17 ? PA NAP 1258 A 1 
HETATM 2 O O1A NAP . . . F 3 9.542 -20.481 -23.698 1 56.48 ? O1A NAP 1258 A 1 
HETATM 3 O O2A NAP . . . F 3 7.743 -18.782 -23.66 1 56.23 ? O2A NAP 1258 A 1 
HETATM 4 O O5B NAP . . . F 3 7.511 -21.108 -24.843 1 51.43 ? O5B NAP 1258 A 1 
HETATM 5 C C5B NAP . . . F 3 7.392 -20.588 -26.123 1 46.52 ? C5B NAP 1258 A 1 
HETATM 6 C C4B NAP . . . F 3 8.446 -21.277 -26.933 1 44.22 ? C4B NAP 1258 A 1 
HETATM 7 O O4B NAP . . . F 3 7.893 -21.53 -28.2 1 42.25 ? O4B NAP 1258 A 1 
HETATM 8 C C3B NAP . . . F 3 9.485 -20.225 -27.167 1 46.52 ? C3B NAP 1258 A 1 
HETATM 9 O O3B NAP . . . F 3 10.79 -20.579 -26.814 1 47.71 ? O3B NAP 1258 A 1 
HETATM 10 C C2B NAP . . . F 3 9.418 -20.036 -28.655 1 46.96 ? C2B NAP 1258 A 1 
HETATM 11 O O2B NAP . . . F 3 10.657 -19.641 -29.157 1 54.38 ? O2B NAP 1258 A 1 
HETATM 12 C C1B NAP . . . F 3 8.871 -21.306 -29.175 1 41.12 ? C1B NAP 1258 A 1 
HETATM 13 N N9A NAP . . . F 3 8.25 -21.178 -30.496 1 36.28 ? N9A NAP 1258 A 1 
HETATM 14 C C8A NAP . . . F 3 6.994 -20.739 -30.803 1 37.06 ? C8A NAP 1258 A 1 
HETATM 15 N N7A NAP . . . F 3 6.798 -20.836 -32.161 1 36.11 ? N7A NAP 1258 A 1 
HETATM 16 C C5A NAP . . . F 3 7.936 -21.327 -32.703 1 34.81 ? C5A NAP 1258 A 1 
HETATM 17 C C6A NAP . . . F 3 8.309 -21.597 -34.013 1 34.85 ? C6A NAP 1258 A 1 
HETATM 18 N N6A NAP . . . F 3 7.453 -21.397 -35.017 1 33.38 ? N6A NAP 1258 A 1 
HETATM 19 N N1A NAP . . . F 3 9.579 -22.102 -34.266 1 37.04 ? N1A NAP 1258 A 1 
HETATM 20 C C2A NAP . . . F 3 10.483 -22.332 -33.235 1 37.2 ? C2A NAP 1258 A 1 
HETATM 21 N N3A NAP . . . F 3 10.091 -22.053 -31.933 1 37.19 ? N3A NAP 1258 A 1 
HETATM 22 C C4A NAP . . . F 3 8.844 -21.552 -31.672 1 35.42 ? C4A NAP 1258 A 1 
HETATM 23 O O3 NAP . . . F 3 7.381 -20.826 -22.297 1 56.74 ? O3 NAP 1258 A 1 
HETATM 24 P PN NAP . . . F 3 6.53 -22.213 -22.046 1 56.17 ? PN NAP 1258 A 1 
HETATM 25 O O1N NAP . . . F 3 5.19 -21.91 -21.444 1 55.74 ? O1N NAP 1258 A 1 
HETATM 26 O O2N NAP . . . F 3 7.497 -23.074 -21.322 1 55.57 ? O2N NAP 1258 A 1 
HETATM 27 O O5D NAP . . . F 3 6.26 -22.873 -23.51 1 50.75 ? O5D NAP 1258 A 1 
HETATM 28 C C5D NAP . . . F 3 6.574 -24.245 -23.792 1 47.19 ? C5D NAP 1258 A 1 
HETATM 29 C C4D NAP . . . F 3 5.428 -25.284 -23.833 1 41.85 ? C4D NAP 1258 A 1 
HETATM 30 O O4D NAP . . . F 3 4.804 -25.463 -22.578 1 38.81 ? O4D NAP 1258 A 1 
HETATM 31 C C3D NAP . . . F 3 4.317 -24.888 -24.776 1 41.44 ? C3D NAP 1258 A 1 
HETATM 32 O O3D NAP . . . F 3 4.237 -25.797 -25.836 1 41.61 ? O3D NAP 1258 A 1 
HETATM 33 C C2D NAP . . . F 3 3.076 -24.783 -23.899 1 40.24 ? C2D NAP 1258 A 1 
HETATM 34 O O2D NAP . . . F 3 1.874 -25.099 -24.563 1 41.41 ? O2D NAP 1258 A 1 
HETATM 35 C C1D NAP . . . F 3 3.438 -25.698 -22.764 1 41.31 ? C1D NAP 1258 A 1 
HETATM 36 N N1N NAP . . . F 3 2.69 -25.521 -21.502 1 45.27 ? N1N NAP 1258 A 1 
HETATM 37 C C2N NAP . . . F 3 3.004 -24.5 -20.64 1 47.87 ? C2N NAP 1258 A 1 
HETATM 38 C C3N NAP . . . F 3 2.31 -24.342 -19.438 1 48.65 ? C3N NAP 1258 A 1 
HETATM 39 C C7N NAP . . . F 3 2.66 -23.208 -18.526 1 49.26 ? C7N NAP 1258 A 1 
HETATM 40 O O7N NAP . . . F 3 1.937 -23.073 -17.328 1 48.83 ? O7N NAP 1258 A 1 
HETATM 41 N N7N NAP . . . F 3 3.629 -22.347 -18.864 1 50.58 ? N7N NAP 1258 A 1 
HETATM 42 C C4N NAP . . . F 3 1.286 -25.251 -19.098 1 49.82 ? C4N NAP 1258 A 1 
HETATM 43 C C5N NAP . . . F 3 0.972 -26.308 -19.965 1 48.02 ? C5N NAP 1258 A 1 
HETATM 44 C C6N NAP . . . F 3 1.688 -26.416 -21.17 1 46.64 ? C6N NAP 1258 A 1 
HETATM 45 P P2B NAP . . . F 3 10.759 -18.02 -29.359 1 59.26 ? P2B NAP 1258 A 1 
HETATM 46 O O1X NAP . . . F 3 12.214 -17.772 -28.925 1 60.24 ? O1X NAP 1258 A 1 
HETATM 47 O O2X NAP . . . F 3 10.577 -17.745 -30.862 1 56.55 ? O2X NAP 1258 A 1 
HETATM 48 O O3X NAP . . . F 3 9.714 -17.287 -28.501 1 49.47 ? O3X NAP 1258 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           48 
#